RNA–Protein interactions for RNA: ENST00000606752.1

USP6NL-204, Transcript of USP6 N-terminal like, humanhuman

TSL 1 (best)

Gene USP6NL, Length 1,823 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP6NL-204ENST00000606752 CTTNBP2Q8WZ74 1663 aa33.75■■■□□ 2.99
USP6NL-204ENST00000606752 TRIM26Q12899 539 aaPredicted RBP33.71■■■□□ 2.99
USP6NL-204ENST00000606752 PCGF6Q9BYE7 350 aa33.67■■■□□ 2.98
USP6NL-204ENST00000606752 PPARGC1BQ86YN6 1023 aaKnown RBP33.66■■■□□ 2.98
USP6NL-204ENST00000606752 SYNJ2O15056 1496 aa33.64■■■□□ 2.98
USP6NL-204ENST00000606752 GRIN2AQ12879 1464 aa33.63■■■□□ 2.97
USP6NL-204ENST00000606752 CHMP7Q8WUX9 453 aaPredicted RBP33.63■■■□□ 2.97
USP6NL-204ENST00000606752 EFCAB5A4FU69 1503 aa33.61■■■□□ 2.97
USP6NL-204ENST00000606752 APLP2Q06481 763 aa33.57■■■□□ 2.96
USP6NL-204ENST00000606752 P3H3Q8IVL6 736 aa33.54■■■□□ 2.96
USP6NL-204ENST00000606752 FBLN2P98095 1184 aa33.52■■■□□ 2.96
USP6NL-204ENST00000606752 KIAA0586Q9BVV6 1533 aa33.5■■■□□ 2.95
USP6NL-204ENST00000606752 IQGAP2Q13576 1575 aa33.5■■■□□ 2.95
USP6NL-204ENST00000606752 FHOD3Q2V2M9 1422 aa33.47■■■□□ 2.95
USP6NL-204ENST00000606752 SAMD9Q5K651 1589 aa33.46■■■□□ 2.95
USP6NL-204ENST00000606752 NUP160Q12769 1436 aa33.4■■■□□ 2.94
USP6NL-204ENST00000606752 TTBK1Q5TCY1 1321 aaPredicted RBP33.38■■■□□ 2.93
USP6NL-204ENST00000606752 UGGT2Q9NYU1 1516 aa33.38■■■□□ 2.93
USP6NL-204ENST00000606752 CEP170Q5SW79 1584 aa33.37■■■□□ 2.93
USP6NL-204ENST00000606752 FMN1Q68DA7 1419 aa33.37■■■□□ 2.93
USP6NL-204ENST00000606752 CASKIN1Q8WXD9 1431 aa33.28■■■□□ 2.92
USP6NL-204ENST00000606752 MAP3K1Q13233 1512 aa33.26■■■□□ 2.91
USP6NL-204ENST00000606752 FYCO1Q9BQS8 1478 aa33.25■■■□□ 2.91
USP6NL-204ENST00000606752 PCF11O94913 1555 aaKnown RBP33.24■■■□□ 2.91
USP6NL-204ENST00000606752 KANK4Q5T7N3 995 aaPredicted RBP33.23■■■□□ 2.91
USP6NL-204ENST00000606752 JPH4Q96JJ6 628 aa33.21■■■□□ 2.91
USP6NL-204ENST00000606752 DISP1Q96F81 1524 aa33.21■■■□□ 2.91
USP6NL-204ENST00000606752 ATP1B4Q9UN42 357 aaPredicted RBP33.2■■■□□ 2.91
USP6NL-204ENST00000606752 CHD1O14646 1710 aa33.17■■■□□ 2.9
USP6NL-204ENST00000606752 TIAM1Q13009 1591 aa33.16■■■□□ 2.9
USP6NL-204ENST00000606752 KIAA0556O60303 1618 aa33.15■■■□□ 2.9
USP6NL-204ENST00000606752 CARMIL2Q6F5E8 1435 aa33.1■■■□□ 2.89
USP6NL-204ENST00000606752 LRRC9Q6ZRR7 1453 aa33.05■■■□□ 2.88
USP6NL-204ENST00000606752 CFAP43Q8NDM7 1665 aa33.04■■■□□ 2.88
USP6NL-204ENST00000606752 PRG4Q92954 1404 aaPredicted RBP32.95■■■□□ 2.87
USP6NL-204ENST00000606752 HECW1Q76N89 1606 aa32.94■■■□□ 2.86
USP6NL-204ENST00000606752 CCDC18Q5T9S5 1454 aa32.92■■■□□ 2.86
USP6NL-204ENST00000606752 LRRIQ1Q96JM4 1722 aa32.88■■■□□ 2.85
USP6NL-204ENST00000606752 SHROOM2Q13796 1616 aa32.87■■■□□ 2.85
USP6NL-204ENST00000606752 EPRSP07814 1512 aaKnown RBP32.87■■■□□ 2.85
USP6NL-204ENST00000606752 MTUS2Q5JR59 1369 aa32.85■■■□□ 2.85
USP6NL-204ENST00000606752 CLASP1Q7Z460 1538 aa32.85■■■□□ 2.85
USP6NL-204ENST00000606752 RAPGEF6Q8TEU7 1601 aa32.83■■■□□ 2.85
USP6NL-204ENST00000606752 RRBP1Q9P2E9 1410 aaKnown RBP32.83■■■□□ 2.85
USP6NL-204ENST00000606752 NUP153P49790 1475 aaKnown RBP32.8■■■□□ 2.84
USP6NL-204ENST00000606752 PLB1Q6P1J6 1458 aa32.79■■■□□ 2.84
USP6NL-204ENST00000606752 PTPRGP23470 1445 aa32.77■■■□□ 2.84
USP6NL-204ENST00000606752 PHLDB1Q86UU1 1377 aa32.76■■■□□ 2.83
USP6NL-204ENST00000606752 CCNB3Q8WWL7 1395 aa32.75■■■□□ 2.83
USP6NL-204ENST00000606752 CDK13Q14004 1512 aaKnown RBP32.74■■■□□ 2.83
USP6NL-204ENST00000606752 EHBP1L1Q8N3D4 1523 aa32.73■■■□□ 2.83
USP6NL-204ENST00000606752 ARID3CA6NKF2 412 aa32.73■■■□□ 2.83
USP6NL-204ENST00000606752 ABCA8O94911 1581 aa32.7■■■□□ 2.83
USP6NL-204ENST00000606752 MAGI3Q5TCQ9 1506 aa32.69■■■□□ 2.82
USP6NL-204ENST00000606752 HNRNPUL2Q1KMD3 747 aaKnown RBP32.69■■■□□ 2.82
USP6NL-204ENST00000606752 HRCP23327 699 aa32.67■■■□□ 2.82
USP6NL-204ENST00000606752 OSCARQ8IYS5 282 aa32.67■■■□□ 2.82
USP6NL-204ENST00000606752 CDK11AQ9UQ88 783 aaPredicted RBP32.67■■■□□ 2.82
USP6NL-204ENST00000606752 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP32.65■■■□□ 2.82
USP6NL-204ENST00000606752 ERCC6L2Q5T890 1561 aa32.64■■■□□ 2.82
USP6NL-204ENST00000606752 NCOA2Q15596 1464 aa32.64■■■□□ 2.82
USP6NL-204ENST00000606752 SUPT6HQ7KZ85 1726 aaKnown RBP32.62■■■□□ 2.81
USP6NL-204ENST00000606752 ARHGEF11O15085 1522 aa32.57■■■□□ 2.8
USP6NL-204ENST00000606752 UACAQ9BZF9 1416 aa32.57■■■□□ 2.8
USP6NL-204ENST00000606752 ATP10BO94823 1461 aa32.54■■■□□ 2.8
USP6NL-204ENST00000606752 MYOM3Q5VTT5 1437 aa32.53■■■□□ 2.8
USP6NL-204ENST00000606752 FGD6Q6ZV73 1430 aa32.52■■■□□ 2.8
USP6NL-204ENST00000606752 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP32.52■■■□□ 2.88e-9■□□□□ 8.6
USP6NL-204ENST00000606752 FAM50AQ14320 339 aaKnown RBP32.51■■■□□ 2.8
USP6NL-204ENST00000606752 TROQ12816 1431 aaPredicted RBP32.5■■■□□ 2.79
USP6NL-204ENST00000606752 PLEKHD1A6NEE1 506 aa32.47■■■□□ 2.79
USP6NL-204ENST00000606752 ITGAEP38570 1179 aa32.43■■■□□ 2.78
USP6NL-204ENST00000606752 ABCC2Q92887 1545 aa32.42■■■□□ 2.78
USP6NL-204ENST00000606752 UHRF1BP1LA0JNW5 1464 aa32.38■■■□□ 2.77
USP6NL-204ENST00000606752 CCER1Q8TC90 406 aaPredicted RBP32.37■■■□□ 2.77
USP6NL-204ENST00000606752 MIA2Q96PC5 1412 aa32.37■■■□□ 2.77
USP6NL-204ENST00000606752 ZEB1P37275 1124 aaPredicted RBP32.35■■■□□ 2.77
USP6NL-204ENST00000606752 ADCY10Q96PN6 1610 aa32.32■■■□□ 2.76
USP6NL-204ENST00000606752 PTPN23Q9H3S7 1636 aa32.3■■■□□ 2.76
USP6NL-204ENST00000606752 TCOF1Q13428 1488 aaKnown RBP32.3■■■□□ 2.76
USP6NL-204ENST00000606752 KIF14Q15058 1648 aa32.26■■■□□ 2.75
USP6NL-204ENST00000606752 KDM5BQ9UGL1 1544 aa32.24■■■□□ 2.75
USP6NL-204ENST00000606752 GPATCH8Q9UKJ3 1502 aaKnown RBP32.21■■■□□ 2.75
USP6NL-204ENST00000606752 ABCC10Q5T3U5 1492 aa32.2■■■□□ 2.75
USP6NL-204ENST00000606752 CFDP1Q9UEE9 299 aaPredicted RBP32.19■■■□□ 2.74
USP6NL-204ENST00000606752 SETD5Q9C0A6 1442 aa32.16■■■□□ 2.74
USP6NL-204ENST00000606752 ZCCHC11Q5TAX3 1644 aaKnown RBP32.15■■■□□ 2.74
USP6NL-204ENST00000606752 PTPRKQ15262 1439 aa32.15■■■□□ 2.74
USP6NL-204ENST00000606752 ITSN2Q9NZM3 1697 aa32.14■■■□□ 2.74
USP6NL-204ENST00000606752 ZNF644Q9H582 1327 aaPredicted RBP32.11■■■□□ 2.73
USP6NL-204ENST00000606752 RAB3GAP2Q9H2M9 1393 aa32.11■■■□□ 2.73
USP6NL-204ENST00000606752 KCNH8Q96L42 1107 aa32.04■■■□□ 2.72
USP6NL-204ENST00000606752 CDC42BPAQ5VT25 1732 aa32.04■■■□□ 2.72
USP6NL-204ENST00000606752 ZNF777Q9ULD5 760 aaPredicted RBP32.03■■■□□ 2.72
USP6NL-204ENST00000606752 CAMSAP2Q08AD1 1489 aa32.02■■■□□ 2.72
USP6NL-204ENST00000606752 HFM1A2PYH4 1435 aa32.02■■■□□ 2.72
USP6NL-204ENST00000606752 DHX57Q6P158 1386 aaKnown RBP32.01■■■□□ 2.71
USP6NL-204ENST00000606752 DAPK1P53355 1430 aa32■■■□□ 2.71
USP6NL-204ENST00000606752 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP32■■■□□ 2.717e-17■■■□□ 15.7
USP6NL-204ENST00000606752 ABCC5O15440 1437 aa31.99■■■□□ 2.71
Retrieved 100 of 20,778 RNA–protein pairs in 8.2 ms