RNA–Protein interactions for RNA: ENST00000606749.1

CUX1-219, Transcript of cut like homeobox 1, humanhuman

TSL 4

Gene CUX1, Length 601 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-219ENST00000606749 CARMIL1Q5VZK9 1371 aa13.2□□□□□ -0.3
CUX1-219ENST00000606749 KIAA0586Q9BVV6 1533 aa13.19□□□□□ -0.3
CUX1-219ENST00000606749 RUSC2Q8N2Y8 1516 aa13.18□□□□□ -0.3
CUX1-219ENST00000606749 CUL7Q14999 1698 aa13.16□□□□□ -0.3
CUX1-219ENST00000606749 NPM1P06748 294 aaKnown RBP eCLIP13.14□□□□□ -0.31
CUX1-219ENST00000606749 FAM69CQ0P6D2 419 aa13.09□□□□□ -0.31
CUX1-219ENST00000606749 PTPRGP23470 1445 aa13.08□□□□□ -0.32
CUX1-219ENST00000606749 TTBK1Q5TCY1 1321 aaPredicted RBP13.07□□□□□ -0.32
CUX1-219ENST00000606749 ADCY10Q96PN6 1610 aa13.06□□□□□ -0.32
CUX1-219ENST00000606749 CARMIL2Q6F5E8 1435 aa13.05□□□□□ -0.32
CUX1-219ENST00000606749 ABCC10Q5T3U5 1492 aa13.05□□□□□ -0.32
CUX1-219ENST00000606749 TNIKQ9UKE5 1360 aa13.05□□□□□ -0.32
CUX1-219ENST00000606749 RAPGEF2Q9Y4G8 1499 aa13.04□□□□□ -0.32
CUX1-219ENST00000606749 KIF13AQ9H1H9 1805 aa13.04□□□□□ -0.32
CUX1-219ENST00000606749 MAPKBP1O60336 1514 aa13.04□□□□□ -0.32
CUX1-219ENST00000606749 IQGAP2Q13576 1575 aa13.03□□□□□ -0.32
CUX1-219ENST00000606749 AEBP2Q6ZN18 517 aaPredicted RBP13□□□□□ -0.33
CUX1-219ENST00000606749 DISP1Q96F81 1524 aa12.99□□□□□ -0.33
CUX1-219ENST00000606749 DIP2BQ9P265 1576 aa12.97□□□□□ -0.33
CUX1-219ENST00000606749 ABCC2Q92887 1545 aa12.97□□□□□ -0.33
CUX1-219ENST00000606749 UGGT2Q9NYU1 1516 aa12.97□□□□□ -0.33
CUX1-219ENST00000606749 UACAQ9BZF9 1416 aa12.96□□□□□ -0.33
CUX1-219ENST00000606749 UHRF1BP1LA0JNW5 1464 aa12.96□□□□□ -0.34
CUX1-219ENST00000606749 ASXL2Q76L83 1435 aa12.94□□□□□ -0.34
CUX1-219ENST00000606749 PRXQ9BXM0 1461 aa12.93□□□□□ -0.34
CUX1-219ENST00000606749 PLB1Q6P1J6 1458 aa12.92□□□□□ -0.34
CUX1-219ENST00000606749 CSRNP3Q8WYN3 585 aa12.9□□□□□ -0.34
CUX1-219ENST00000606749 KIAA0556O60303 1618 aa12.9□□□□□ -0.34
CUX1-219ENST00000606749 TSPOAP1O95153 1857 aa12.89□□□□□ -0.35
CUX1-219ENST00000606749 KDM5BQ9UGL1 1544 aa12.89□□□□□ -0.35
CUX1-219ENST00000606749 GOLGA3Q08378 1498 aa12.87□□□□□ -0.35
CUX1-219ENST00000606749 GLI2P10070 1586 aa12.86□□□□□ -0.35
CUX1-219ENST00000606749 CTTNBP2Q8WZ74 1663 aa12.86□□□□□ -0.35
CUX1-219ENST00000606749 KDM6BO15054 1643 aa12.85□□□□□ -0.35
CUX1-219ENST00000606749 EPRSP07814 1512 aaKnown RBP12.85□□□□□ -0.35
CUX1-219ENST00000606749 ZCCHC11Q5TAX3 1644 aaKnown RBP12.84□□□□□ -0.35
CUX1-219ENST00000606749 P3H3Q8IVL6 736 aa12.83□□□□□ -0.36
CUX1-219ENST00000606749 FAM9AQ8IZU1 332 aaPredicted RBP12.82□□□□□ -0.36
CUX1-219ENST00000606749 KCNH8Q96L42 1107 aa12.81□□□□□ -0.36
CUX1-219ENST00000606749 ABCA8O94911 1581 aa12.81□□□□□ -0.36
CUX1-219ENST00000606749 PPRC1Q5VV67 1664 aaKnown RBP12.8□□□□□ -0.36
CUX1-219ENST00000606749 KDM4FA0A1W2PPD8 638 aa12.8□□□□□ -0.36
CUX1-219ENST00000606749 WDR7Q9Y4E6 1490 aa12.79□□□□□ -0.36
CUX1-219ENST00000606749 EEA1Q15075 1411 aa12.79□□□□□ -0.36
CUX1-219ENST00000606749 COL17A1Q9UMD9 1497 aaPredicted RBP12.78□□□□□ -0.36
CUX1-219ENST00000606749 MAP3K4Q9Y6R4 1608 aa12.78□□□□□ -0.36
CUX1-219ENST00000606749 ARID3CA6NKF2 412 aa12.76□□□□□ -0.37
CUX1-219ENST00000606749 TEX14Q8IWB6 1497 aa12.76□□□□□ -0.37
CUX1-219ENST00000606749 RANGAP1P46060 587 aaPredicted RBP12.75□□□□□ -0.37
CUX1-219ENST00000606749 CD109Q6YHK3 1445 aa12.75□□□□□ -0.37
CUX1-219ENST00000606749 ATP10BO94823 1461 aa12.74□□□□□ -0.37
CUX1-219ENST00000606749 SAMD9Q5K651 1589 aa12.71□□□□□ -0.37
CUX1-219ENST00000606749 MAGI3Q5TCQ9 1506 aa12.71□□□□□ -0.38
CUX1-219ENST00000606749 CHIC1Q5VXU3 224 aa12.7□□□□□ -0.38
CUX1-219ENST00000606749 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP12.69□□□□□ -0.38
CUX1-219ENST00000606749 HNRNPUL2Q1KMD3 747 aaKnown RBP12.69□□□□□ -0.38
CUX1-219ENST00000606749 CFAP43Q8NDM7 1665 aa12.67□□□□□ -0.38
CUX1-219ENST00000606749 FHOD3Q2V2M9 1422 aa12.66□□□□□ -0.38
CUX1-219ENST00000606749 RAPGEF6Q8TEU7 1601 aa12.66□□□□□ -0.38
CUX1-219ENST00000606749 EHMT2Q96KQ7 1210 aa12.65□□□□□ -0.38
CUX1-219ENST00000606749 KIF21BO75037 1637 aa12.65□□□□□ -0.38
CUX1-219ENST00000606749 NUP153P49790 1475 aaKnown RBP12.65□□□□□ -0.38
CUX1-219ENST00000606749 PLEKHD1A6NEE1 506 aa12.64□□□□□ -0.39
CUX1-219ENST00000606749 UBTFP17480 764 aaKnown RBP12.64□□□□□ -0.39
CUX1-219ENST00000606749 ADGRL1O94910 1474 aa12.64□□□□□ -0.39
CUX1-219ENST00000606749 ARAP3Q8WWN8 1544 aa12.62□□□□□ -0.39
CUX1-219ENST00000606749 PHLDB1Q86UU1 1377 aa12.62□□□□□ -0.39
CUX1-219ENST00000606749 ABCA9Q8IUA7 1624 aa12.61□□□□□ -0.39
CUX1-219ENST00000606749 EFCAB5A4FU69 1503 aa12.59□□□□□ -0.39
CUX1-219ENST00000606749 RAPGEF3O95398 923 aa12.59□□□□□ -0.39
CUX1-219ENST00000606749 NEO1Q92859 1461 aa12.57□□□□□ -0.4
CUX1-219ENST00000606749 ATP1B4Q9UN42 357 aaPredicted RBP12.55□□□□□ -0.4
CUX1-219ENST00000606749 ARHGAP35Q9NRY4 1499 aa12.53□□□□□ -0.4
CUX1-219ENST00000606749 FMN1Q68DA7 1419 aa12.53□□□□□ -0.4
CUX1-219ENST00000606749 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP12.52□□□□□ -0.41
CUX1-219ENST00000606749 AKNAQ7Z591 1439 aa12.51□□□□□ -0.41
CUX1-219ENST00000606749 CDK13Q14004 1512 aaKnown RBP12.51□□□□□ -0.41
CUX1-219ENST00000606749 CDK11AQ9UQ88 783 aaPredicted RBP12.5□□□□□ -0.41
CUX1-219ENST00000606749 FANCAO15360 1455 aa12.49□□□□□ -0.41
CUX1-219ENST00000606749 DENND4BO75064 1496 aaPredicted RBP12.49□□□□□ -0.41
CUX1-219ENST00000606749 FRMPD1Q5SYB0 1578 aa12.47□□□□□ -0.41
CUX1-219ENST00000606749 PLCH2O75038 1416 aa12.47□□□□□ -0.41
CUX1-219ENST00000606749 ARID4BQ4LE39 1312 aaPredicted RBP12.47□□□□□ -0.41
CUX1-219ENST00000606749 TTC37Q6PGP7 1564 aa12.46□□□□□ -0.42
CUX1-219ENST00000606749 HECW1Q76N89 1606 aa12.44□□□□□ -0.42
CUX1-219ENST00000606749 EFCAB2Q5VUJ9 269 aa12.44□□□□□ -0.42
CUX1-219ENST00000606749 CFAP74Q9C0B2 1584 aa12.43□□□□□ -0.42
CUX1-219ENST00000606749 SCAPERQ9BY12 1400 aa12.43□□□□□ -0.42
CUX1-219ENST00000606749 HECW2Q9P2P5 1572 aa12.43□□□□□ -0.42
CUX1-219ENST00000606749 RICTORQ6R327 1708 aa12.42□□□□□ -0.42
CUX1-219ENST00000606749 ADAMTSL3P82987 1691 aa12.42□□□□□ -0.42
CUX1-219ENST00000606749 TROQ12816 1431 aaPredicted RBP12.42□□□□□ -0.42
CUX1-219ENST00000606749 PTPRMP28827 1452 aa12.41□□□□□ -0.42
CUX1-219ENST00000606749 YEATS2Q9ULM3 1422 aa12.4□□□□□ -0.42
CUX1-219ENST00000606749 MAGI2Q86UL8 1455 aa12.4□□□□□ -0.43
CUX1-219ENST00000606749 BCORL1Q5H9F3 1711 aa12.4□□□□□ -0.43
CUX1-219ENST00000606749 CLIP1P30622 1438 aa12.39□□□□□ -0.43
CUX1-219ENST00000606749 CASKIN1Q8WXD9 1431 aa12.39□□□□□ -0.43
CUX1-219ENST00000606749 ZMYM4Q5VZL5 1548 aa12.39□□□□□ -0.43
CUX1-219ENST00000606749 POGZQ7Z3K3 1410 aa12.38□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 15.6 ms