RNA–Protein interactions for RNA: ENST00000602898.1

SPTBN1-206, Transcript of spectrin beta, non-erythrocytic 1, humanhuman

TSL 1 (best)

Gene SPTBN1, Length 2,942 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPTBN1-206ENST00000602898 FBXO3Q9UK99 471 aa7.96□□□□□ -1.14
SPTBN1-206ENST00000602898 PABPN1Q86U42 306 aaKnown RBP eCLIP7.94□□□□□ -1.14
SPTBN1-206ENST00000602898 VASPP50552 380 aaPredicted RBP7.93□□□□□ -1.14
SPTBN1-206ENST00000602898 PROM2Q8N271 834 aa7.9□□□□□ -1.15
SPTBN1-206ENST00000602898 CHMP4AQ9BY43 222 aa7.89□□□□□ -1.15
SPTBN1-206ENST00000602898 BICRAQ9NZM4 1560 aa7.88□□□□□ -1.15
SPTBN1-206ENST00000602898 BCL11AQ9H165 835 aa7.88□□□□□ -1.15
SPTBN1-206ENST00000602898 PDIA4P13667 645 aaKnown RBP7.85□□□□□ -1.15
SPTBN1-206ENST00000602898 DHX37Q8IY37 1157 aaKnown RBP7.85□□□□□ -1.15
SPTBN1-206ENST00000602898 ZBTB12Q9Y330 459 aaPredicted RBP7.83□□□□□ -1.16
SPTBN1-206ENST00000602898 IGSF3O75054 1194 aa7.83□□□□□ -1.16
SPTBN1-206ENST00000602898 SSUH2Q9Y2M2 353 aa7.82□□□□□ -1.16
SPTBN1-206ENST00000602898 SPDYE2BA6NHP3 402 aa7.79□□□□□ -1.16
SPTBN1-206ENST00000602898 SPDYE6P0CI01 402 aa7.79□□□□□ -1.16
SPTBN1-206ENST00000602898 SPDYE2Q495Y8 402 aa7.79□□□□□ -1.16
SPTBN1-206ENST00000602898 CLEC11AQ9Y240 323 aa7.79□□□□□ -1.16
SPTBN1-206ENST00000602898 PLCD3Q8N3E9 789 aa7.79□□□□□ -1.16
SPTBN1-206ENST00000602898 MIER1Q8N108 512 aa7.78□□□□□ -1.16
SPTBN1-206ENST00000602898 CFAP44Q96MT7 982 aa7.78□□□□□ -1.16
SPTBN1-206ENST00000602898 CC2D2AQ9P2K1 1620 aa7.77□□□□□ -1.17
SPTBN1-206ENST00000602898 PKD2Q13563 968 aa7.76□□□□□ -1.17
SPTBN1-206ENST00000602898 ARID3AQ99856 593 aa7.75□□□□□ -1.17
SPTBN1-206ENST00000602898 FAM9AQ8IZU1 332 aaPredicted RBP7.75□□□□□ -1.17
SPTBN1-206ENST00000602898 CDK11BP21127 795 aaKnown RBP7.73□□□□□ -1.17
SPTBN1-206ENST00000602898 CDK11AQ9UQ88 783 aaPredicted RBP7.73□□□□□ -1.17
SPTBN1-206ENST00000602898 PAXIP1Q6ZW49 1069 aaPredicted RBP7.72□□□□□ -1.17
SPTBN1-206ENST00000602898 UBE2Q2Q8WVN8 375 aa7.72□□□□□ -1.17
SPTBN1-206ENST00000602898 TSHZ2Q9NRE2 1034 aa7.72□□□□□ -1.17
SPTBN1-206ENST00000602898 DCAF1Q9Y4B6 1507 aa7.72□□□□□ -1.17
SPTBN1-206ENST00000602898 CECR2Q9BXF3 1484 aa7.71□□□□□ -1.18
SPTBN1-206ENST00000602898 NBR1Q14596 966 aa7.69□□□□□ -1.18
SPTBN1-206ENST00000602898 EIF4G1Q04637 1599 aaKnown RBP7.68□□□□□ -1.18
SPTBN1-206ENST00000602898 PDE4CQ08493 712 aa7.67□□□□□ -1.18
SPTBN1-206ENST00000602898 CIZ1Q9ULV3 898 aaPredicted RBP7.67□□□□□ -1.18
SPTBN1-206ENST00000602898 CHADLQ6NUI6 762 aa7.66□□□□□ -1.18
SPTBN1-206ENST00000602898 RGL2O15211 777 aa7.65□□□□□ -1.18
SPTBN1-206ENST00000602898 REM2Q8IYK8 340 aaPredicted RBP7.64□□□□□ -1.19
SPTBN1-206ENST00000602898 ECM2O94769 699 aaPredicted RBP7.62□□□□□ -1.19
SPTBN1-206ENST00000602898 CENPBP07199 599 aaPredicted RBP7.62□□□□□ -1.19
SPTBN1-206ENST00000602898 NECTIN2Q92692 538 aa7.62□□□□□ -1.19
SPTBN1-206ENST00000602898 PITPNM1O00562 1244 aa7.62□□□□□ -1.19
SPTBN1-206ENST00000602898 NPM1P06748 294 aaKnown RBP eCLIP7.61□□□□□ -1.19
SPTBN1-206ENST00000602898 SPOCK2Q92563 424 aa7.6□□□□□ -1.19
SPTBN1-206ENST00000602898 CCDC9Q9Y3X0 531 aaKnown RBP7.59□□□□□ -1.19
SPTBN1-206ENST00000602898 ZNF428Q96B54 188 aa7.59□□□□□ -1.19
SPTBN1-206ENST00000602898 BRD2P25440 801 aaKnown RBP7.58□□□□□ -1.2
SPTBN1-206ENST00000602898 PRR29P0C7W0 189 aa7.57□□□□□ -1.2
SPTBN1-206ENST00000602898 POLR3GLQ9BT43 218 aa7.56□□□□□ -1.2
SPTBN1-206ENST00000602898 RNF25Q96BH1 459 aaPredicted RBP7.56□□□□□ -1.2
SPTBN1-206ENST00000602898 STAG3Q9UJ98 1225 aa7.55□□□□□ -1.2
SPTBN1-206ENST00000602898 C1orf115Q9H7X2 142 aa7.55□□□□□ -1.2
SPTBN1-206ENST00000602898 CREBZFQ9NS37 354 aa7.55□□□□□ -1.2
SPTBN1-206ENST00000602898 RASEFQ8IZ41 740 aa7.54□□□□□ -1.2
SPTBN1-206ENST00000602898 HSP90B1P14625 803 aaKnown RBP7.53□□□□□ -1.2
SPTBN1-206ENST00000602898 AKT1S1Q96B36 256 aa7.53□□□□□ -1.2
SPTBN1-206ENST00000602898 BCL11BQ9C0K0 894 aaPredicted RBP7.53□□□□□ -1.2
SPTBN1-206ENST00000602898 MNX1P50219 401 aaPredicted RBP7.52□□□□□ -1.21
SPTBN1-206ENST00000602898 SPDYE1Q8NFV5 336 aaPredicted RBP7.52□□□□□ -1.21
SPTBN1-206ENST00000602898 RBM42Q9BTD8 480 aaKnown RBP7.52□□□□□ -1.21
SPTBN1-206ENST00000602898 ZBTB4Q9P1Z0 1013 aaPredicted RBP7.52□□□□□ -1.21
SPTBN1-206ENST00000602898 IRX6P78412 446 aaPredicted RBP7.51□□□□□ -1.21
SPTBN1-206ENST00000602898 CHGAP10645 457 aaKnown RBP7.5□□□□□ -1.21
SPTBN1-206ENST00000602898 PYGBP11216 843 aa7.5□□□□□ -1.21
SPTBN1-206ENST00000602898 TAF7LQ5H9L4 462 aa7.5□□□□□ -1.21
SPTBN1-206ENST00000602898 THOC2Q8NI27 1593 aaKnown RBP7.49□□□□□ -1.21
SPTBN1-206ENST00000602898 ARID3CA6NKF2 412 aa7.49□□□□□ -1.21
SPTBN1-206ENST00000602898 BRPF1P55201 1214 aaPredicted RBP7.49□□□□□ -1.21
SPTBN1-206ENST00000602898 DCAF8Q5TAQ9 597 aa7.49□□□□□ -1.21
SPTBN1-206ENST00000602898 NUBP1P53384 320 aa7.48□□□□□ -1.21
SPTBN1-206ENST00000602898 TSPYL2Q9H2G4 693 aaPredicted RBP7.48□□□□□ -1.21
SPTBN1-206ENST00000602898 DHX30Q7L2E3 1194 aaKnown RBP eCLIP7.48□□□□□ -1.21
SPTBN1-206ENST00000602898 PPARGC1BQ86YN6 1023 aaKnown RBP7.47□□□□□ -1.21
SPTBN1-206ENST00000602898 ZBTB7CA1YPR0 619 aa7.47□□□□□ -1.21
SPTBN1-206ENST00000602898 BBXQ8WY36 941 aaPredicted RBP7.44□□□□□ -1.22
SPTBN1-206ENST00000602898 NEFLP07196 543 aa7.44□□□□□ -1.22
SPTBN1-206ENST00000602898 CCDC136Q96JN2 1154 aa7.44□□□□□ -1.22
SPTBN1-206ENST00000602898 ANP32EQ9BTT0 268 aa7.44□□□□□ -1.22
SPTBN1-206ENST00000602898 ACIN1Q9UKV3 1341 aaKnown RBP7.42□□□□□ -1.22
SPTBN1-206ENST00000602898 PRKAR2AP13861 404 aaKnown RBP7.42□□□□□ -1.22
SPTBN1-206ENST00000602898 HMGXB3Q12766 1538 aa7.42□□□□□ -1.22
SPTBN1-206ENST00000602898 FOXD4L5Q5VV16 416 aaPredicted RBP7.41□□□□□ -1.22
SPTBN1-206ENST00000602898 FOXD4L4Q8WXT5 416 aaPredicted RBP7.41□□□□□ -1.22
SPTBN1-206ENST00000602898 PKNOX2Q96KN3 472 aa7.41□□□□□ -1.22
SPTBN1-206ENST00000602898 PUS7Q96PZ0 661 aaKnown RBP7.41□□□□□ -1.22
SPTBN1-206ENST00000602898 RAD21O60216 631 aa7.4□□□□□ -1.23
SPTBN1-206ENST00000602898 HMGB1P09429 215 aaKnown RBP7.39□□□□□ -1.23
SPTBN1-206ENST00000602898 KCTD17Q8N5Z5 321 aa7.39□□□□□ -1.23
SPTBN1-206ENST00000602898 SMARCA2P51531 1590 aa7.39□□□□□ -1.23
SPTBN1-206ENST00000602898 LAMC3Q9Y6N6 1575 aa7.39□□□□□ -1.23
SPTBN1-206ENST00000602898 RBM25P49756 843 aaKnown RBP7.38□□□□□ -1.23
SPTBN1-206ENST00000602898 SPRYD3Q8NCJ5 442 aa7.38□□□□□ -1.23
SPTBN1-206ENST00000602898 NKX1-1Q15270 411 aaPredicted RBP7.38□□□□□ -1.23
SPTBN1-206ENST00000602898 MTMR7Q9Y216 660 aa7.38□□□□□ -1.23
SPTBN1-206ENST00000602898 A0A0U1RQG5 324 aaPredicted RBP7.37□□□□□ -1.23
SPTBN1-206ENST00000602898 PCDHB8Q9UN66 801 aa7.37□□□□□ -1.23
SPTBN1-206ENST00000602898 PCDHB13Q9Y5F0 798 aa7.37□□□□□ -1.23
SPTBN1-206ENST00000602898 BRPF3Q9ULD4 1205 aa7.36□□□□□ -1.23
SPTBN1-206ENST00000602898 STK25O00506 426 aa7.36□□□□□ -1.23
SPTBN1-206ENST00000602898 CHRDL2Q6WN34 429 aa7.36□□□□□ -1.23
SPTBN1-206ENST00000602898 FAM212AQ96EL1 285 aa7.36□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 182.2 ms