RNA–Protein interactions for RNA: ENST00000602557.5

CSMD1-216, Transcript of CUB and Sushi multiple domains 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CSMD1, Length 11,740 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD1-216ENST00000602557 STAG3Q9UJ98 1225 aa11.53□□□□□ -0.56
CSMD1-216ENST00000602557 ESF1Q9H501 851 aaKnown RBP11.53□□□□□ -0.56
CSMD1-216ENST00000602557 TPRNQ4KMQ1 711 aa11.52□□□□□ -0.57
CSMD1-216ENST00000602557 NCLP19338 710 aaKnown RBP11.52□□□□□ -0.57
CSMD1-216ENST00000602557 GOLGA6L2Q8N9W4 650 aaPredicted RBP11.52□□□□□ -0.57
CSMD1-216ENST00000602557 BECN1Q14457 450 aa11.5□□□□□ -0.57
CSMD1-216ENST00000602557 TMC1Q8TDI8 760 aa11.5□□□□□ -0.57
CSMD1-216ENST00000602557 PPM1GO15355 546 aaPredicted RBP11.49□□□□□ -0.57
CSMD1-216ENST00000602557 SENP3-EIF4A1A0A087X0R7 540 aa11.48□□□□□ -0.57
CSMD1-216ENST00000602557 PRKCSHP14314 528 aaPredicted RBP11.48□□□□□ -0.57
CSMD1-216ENST00000602557 MRS2Q9HD23 443 aa11.48□□□□□ -0.57
CSMD1-216ENST00000602557 GRWD1Q9BQ67 446 aaKnown RBP eCLIP11.47□□□□□ -0.57
CSMD1-216ENST00000602557 CHIC2Q9UKJ5 165 aa11.47□□□□□ -0.57
CSMD1-216ENST00000602557 WDR43Q15061 677 aaKnown RBP eCLIP11.46□□□□□ -0.57
CSMD1-216ENST00000602557 RBM19Q9Y4C8 960 aaKnown RBP11.45□□□□□ -0.58
CSMD1-216ENST00000602557 VSIG10Q8N0Z9 540 aa11.45□□□□□ -0.58
CSMD1-216ENST00000602557 ZBTB7CA1YPR0 619 aa11.45□□□□□ -0.58
CSMD1-216ENST00000602557 A0A0U1RQG5 324 aaPredicted RBP11.44□□□□□ -0.58
CSMD1-216ENST00000602557 MYH16Q9H6N6 1097 aa11.43□□□□□ -0.58
CSMD1-216ENST00000602557 CCDC180Q9P1Z9 1646 aa11.43□□□□□ -0.58
CSMD1-216ENST00000602557 KDM2AQ9Y2K7 1162 aa11.43□□□□□ -0.58
CSMD1-216ENST00000602557 HIRIP3Q9BW71 556 aaPredicted RBP11.43□□□□□ -0.58
CSMD1-216ENST00000602557 SENP3Q9H4L4 574 aaPredicted RBP11.4□□□□□ -0.58
CSMD1-216ENST00000602557 GOLGA6L22H0YM25 854 aa11.4□□□□□ -0.58
CSMD1-216ENST00000602557 TIMELESSQ9UNS1 1208 aa11.39□□□□□ -0.59
CSMD1-216ENST00000602557 TSHZ2Q9NRE2 1034 aa11.37□□□□□ -0.59
CSMD1-216ENST00000602557 A0A0G2JS52 829 aa11.37□□□□□ -0.59
CSMD1-216ENST00000602557 B4GALNT3Q6L9W6 998 aa11.36□□□□□ -0.59
CSMD1-216ENST00000602557 L1TD1Q5T7N2 865 aaKnown RBP11.35□□□□□ -0.59
CSMD1-216ENST00000602557 HSP90AA2PQ14568 343 aaPredicted RBP11.35□□□□□ -0.59
CSMD1-216ENST00000602557 PLEKHG5O94827 1062 aa11.34□□□□□ -0.59
CSMD1-216ENST00000602557 PNNQ9H307 717 aaKnown RBP11.34□□□□□ -0.59
CSMD1-216ENST00000602557 MTUS2Q5JR59 1369 aa11.34□□□□□ -0.59
CSMD1-216ENST00000602557 PPP4R2Q9NY27 417 aa11.34□□□□□ -0.59
CSMD1-216ENST00000602557 MSNP26038 577 aaKnown RBP11.33□□□□□ -0.6
CSMD1-216ENST00000602557 CLIP1P30622 1438 aa11.33□□□□□ -0.6
CSMD1-216ENST00000602557 PLCB2Q00722 1185 aa11.33□□□□□ -0.6
CSMD1-216ENST00000602557 TNNT3P45378 269 aaPredicted RBP11.32□□□□□ -0.6
CSMD1-216ENST00000602557 SPRYD3Q8NCJ5 442 aa11.32□□□□□ -0.6
CSMD1-216ENST00000602557 PKNOX2Q96KN3 472 aa11.32□□□□□ -0.6
CSMD1-216ENST00000602557 RGS3P49796 1198 aa11.32□□□□□ -0.6
CSMD1-216ENST00000602557 RRP7BPQ9NSQ0 103 aa11.3□□□□□ -0.6
CSMD1-216ENST00000602557 CHAF1AQ13111 956 aaPredicted RBP11.29□□□□□ -0.6
CSMD1-216ENST00000602557 C14orf37Q86TY3 774 aa11.29□□□□□ -0.6
CSMD1-216ENST00000602557 PODXL2Q9NZ53 605 aa11.29□□□□□ -0.6
CSMD1-216ENST00000602557 MYO15BQ96JP2 1530 aa11.28□□□□□ -0.6
CSMD1-216ENST00000602557 NPM1P06748 294 aaKnown RBP eCLIP11.28□□□□□ -0.6
CSMD1-216ENST00000602557 GZF1Q9H116 711 aaPredicted RBP11.28□□□□□ -0.6
CSMD1-216ENST00000602557 RSPH6AQ9H0K4 717 aa11.28□□□□□ -0.6
CSMD1-216ENST00000602557 EIF4G2P78344 907 aaKnown RBP eCLIP11.27□□□□□ -0.6
CSMD1-216ENST00000602557 ANO8Q9HCE9 1232 aaPredicted RBP11.27□□□□□ -0.6
CSMD1-216ENST00000602557 TSPY4P0CV99 314 aa11.26□□□□□ -0.61
CSMD1-216ENST00000602557 TSPY10P0CW01 314 aa11.26□□□□□ -0.61
CSMD1-216ENST00000602557 FTSJ3Q8IY81 847 aaKnown RBP11.25□□□□□ -0.61
CSMD1-216ENST00000602557 ZCCHC6Q5VYS8 1495 aaKnown RBP11.24□□□□□ -0.61
CSMD1-216ENST00000602557 HSP90AB1P08238 724 aaKnown RBP11.24□□□□□ -0.61
CSMD1-216ENST00000602557 PPP1R15AO75807 674 aaPredicted RBP11.23□□□□□ -0.61
CSMD1-216ENST00000602557 ZRSR1Q15695 479 aaKnown RBP11.23□□□□□ -0.61
CSMD1-216ENST00000602557 CASC1Q6TDU7 716 aa11.22□□□□□ -0.61
CSMD1-216ENST00000602557 CEP162Q5TB80 1403 aa11.21□□□□□ -0.62
CSMD1-216ENST00000602557 RGL3Q3MIN7 710 aa11.19□□□□□ -0.62
CSMD1-216ENST00000602557 KNSTRNQ9Y448 316 aa11.19□□□□□ -0.62
CSMD1-216ENST00000602557 TULP1O00294 542 aaPredicted RBP11.19□□□□□ -0.62
CSMD1-216ENST00000602557 GOLGA3Q08378 1498 aa11.18□□□□□ -0.62
CSMD1-216ENST00000602557 DRC7Q8IY82 874 aa11.17□□□□□ -0.62
CSMD1-216ENST00000602557 TAOK2Q9UL54 1235 aa11.17□□□□□ -0.62
CSMD1-216ENST00000602557 CFAP53Q96M91 514 aa11.17□□□□□ -0.62
CSMD1-216ENST00000602557 SLKQ9H2G2 1235 aaPredicted RBP11.17□□□□□ -0.62
CSMD1-216ENST00000602557 NEUROD2Q15784 382 aa11.16□□□□□ -0.62
CSMD1-216ENST00000602557 CHMP7Q8WUX9 453 aaPredicted RBP11.16□□□□□ -0.62
CSMD1-216ENST00000602557 RSF1Q96T23 1441 aaPredicted RBP11.16□□□□□ -0.62
CSMD1-216ENST00000602557 HSCBQ8IWL3 235 aa11.16□□□□□ -0.62
CSMD1-216ENST00000602557 GOLGA6L6A8MZA4 724 aa11.15□□□□□ -0.62
CSMD1-216ENST00000602557 KCNH8Q96L42 1107 aa11.15□□□□□ -0.62
CSMD1-216ENST00000602557 GOLGA6L3A6NEY3 463 aa11.14□□□□□ -0.63
CSMD1-216ENST00000602557 FRAT1Q92837 279 aaPredicted RBP11.13□□□□□ -0.63
CSMD1-216ENST00000602557 IPO9Q96P70 1041 aaKnown RBP11.12□□□□□ -0.63
CSMD1-216ENST00000602557 KIAA2012Q0VF49 1180 aa11.12□□□□□ -0.63
CSMD1-216ENST00000602557 CARD11Q9BXL7 1154 aa11.11□□□□□ -0.63
CSMD1-216ENST00000602557 MAPK8IP3Q9UPT6 1336 aa11.1□□□□□ -0.63
CSMD1-216ENST00000602557 ZNF771Q7L3S4 317 aaPredicted RBP11.1□□□□□ -0.63
CSMD1-216ENST00000602557 CDCA8Q53HL2 280 aa11.1□□□□□ -0.63
CSMD1-216ENST00000602557 HAP1P54257 671 aaPredicted RBP11.09□□□□□ -0.63
CSMD1-216ENST00000602557 CC2D1BQ5T0F9 858 aaKnown RBP11.09□□□□□ -0.63
CSMD1-216ENST00000602557 FGD1P98174 961 aa11.09□□□□□ -0.63
CSMD1-216ENST00000602557 OS9Q13438 667 aaPredicted RBP11.08□□□□□ -0.64
CSMD1-216ENST00000602557 NAP1L2Q9ULW6 460 aaPredicted RBP11.08□□□□□ -0.64
CSMD1-216ENST00000602557 NRDCO43847 1150 aa11.07□□□□□ -0.64
CSMD1-216ENST00000602557 KCNJ4P48050 445 aa11.06□□□□□ -0.64
CSMD1-216ENST00000602557 PTMSP20962 102 aa11.06□□□□□ -0.64
CSMD1-216ENST00000602557 FAM13BQ9NYF5 915 aa11.06□□□□□ -0.64
CSMD1-216ENST00000602557 CFDP1Q9UEE9 299 aaPredicted RBP11.06□□□□□ -0.64
CSMD1-216ENST00000602557 PLEKHD1A6NEE1 506 aa11.05□□□□□ -0.64
CSMD1-216ENST00000602557 EEA1Q15075 1411 aa11.05□□□□□ -0.64
CSMD1-216ENST00000602557 RB1CC1Q8TDY2 1594 aa11.05□□□□□ -0.64
CSMD1-216ENST00000602557 SIN3AQ96ST3 1273 aa11.04□□□□□ -0.64
CSMD1-216ENST00000602557 IL27Q8NEV9 243 aa11.04□□□□□ -0.64
CSMD1-216ENST00000602557 CALRP27797 417 aaKnown RBP11.03□□□□□ -0.64
CSMD1-216ENST00000602557 LMOD2Q6P5Q4 547 aa11.03□□□□□ -0.64
CSMD1-216ENST00000602557 GBP4Q96PP9 640 aa11.03□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms