RNA–Protein interactions for RNA: ENST00000602239.1

SHKBP1-228, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 450 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-228ENST00000602239 RUSC2Q8N2Y8 1516 aa27.5■■□□□ 1.99
SHKBP1-228ENST00000602239 KIAA0586Q9BVV6 1533 aa27.41■■□□□ 1.98
SHKBP1-228ENST00000602239 CUL7Q14999 1698 aa27.38■■□□□ 1.97
SHKBP1-228ENST00000602239 CARMIL1Q5VZK9 1371 aa27.37■■□□□ 1.97
SHKBP1-228ENST00000602239 NPM1P06748 294 aaKnown RBP eCLIP27.3■■□□□ 1.96
SHKBP1-228ENST00000602239 KIF13AQ9H1H9 1805 aa27.3■■□□□ 1.96
SHKBP1-228ENST00000602239 ADCY10Q96PN6 1610 aa27.27■■□□□ 1.96
SHKBP1-228ENST00000602239 FAM69CQ0P6D2 419 aa27.25■■□□□ 1.95
SHKBP1-228ENST00000602239 TTBK1Q5TCY1 1321 aaPredicted RBP27.22■■□□□ 1.95
SHKBP1-228ENST00000602239 ABCC10Q5T3U5 1492 aa27.21■■□□□ 1.95
SHKBP1-228ENST00000602239 PTPRGP23470 1445 aa27.19■■□□□ 1.94
SHKBP1-228ENST00000602239 MAPKBP1O60336 1514 aa27.18■■□□□ 1.94
SHKBP1-228ENST00000602239 AEBP2Q6ZN18 517 aaPredicted RBP27.18■■□□□ 1.94
SHKBP1-228ENST00000602239 TNIKQ9UKE5 1360 aa27.12■■□□□ 1.93
SHKBP1-228ENST00000602239 CARMIL2Q6F5E8 1435 aa27.12■■□□□ 1.93
SHKBP1-228ENST00000602239 IQGAP2Q13576 1575 aa27.12■■□□□ 1.93
SHKBP1-228ENST00000602239 DIP2BQ9P265 1576 aa27.11■■□□□ 1.93
SHKBP1-228ENST00000602239 RAPGEF2Q9Y4G8 1499 aa27.08■■□□□ 1.93
SHKBP1-228ENST00000602239 DISP1Q96F81 1524 aa27.05■■□□□ 1.92
SHKBP1-228ENST00000602239 ABCC2Q92887 1545 aa27■■□□□ 1.91
SHKBP1-228ENST00000602239 UGGT2Q9NYU1 1516 aa26.96■■□□□ 1.91
SHKBP1-228ENST00000602239 UACAQ9BZF9 1416 aa26.96■■□□□ 1.91
SHKBP1-228ENST00000602239 TSPOAP1O95153 1857 aa26.96■■□□□ 1.91
SHKBP1-228ENST00000602239 UHRF1BP1LA0JNW5 1464 aa26.94■■□□□ 1.9
SHKBP1-228ENST00000602239 ASXL2Q76L83 1435 aa26.94■■□□□ 1.9
SHKBP1-228ENST00000602239 PLB1Q6P1J6 1458 aa26.88■■□□□ 1.89
SHKBP1-228ENST00000602239 KIAA0556O60303 1618 aa26.87■■□□□ 1.89
SHKBP1-228ENST00000602239 KDM6BO15054 1643 aa26.86■■□□□ 1.89
SHKBP1-228ENST00000602239 KDM5BQ9UGL1 1544 aa26.85■■□□□ 1.89
SHKBP1-228ENST00000602239 PRXQ9BXM0 1461 aa26.82■■□□□ 1.88
SHKBP1-228ENST00000602239 GLI2P10070 1586 aa26.8■■□□□ 1.88
SHKBP1-228ENST00000602239 CTTNBP2Q8WZ74 1663 aa26.79■■□□□ 1.88
SHKBP1-228ENST00000602239 ZCCHC11Q5TAX3 1644 aaKnown RBP26.76■■□□□ 1.87
SHKBP1-228ENST00000602239 EPRSP07814 1512 aaKnown RBP26.76■■□□□ 1.87
SHKBP1-228ENST00000602239 PPRC1Q5VV67 1664 aaKnown RBP26.76■■□□□ 1.87
SHKBP1-228ENST00000602239 KDM4FA0A1W2PPD8 638 aa26.73■■□□□ 1.87
SHKBP1-228ENST00000602239 GOLGA3Q08378 1498 aa26.72■■□□□ 1.87
SHKBP1-228ENST00000602239 CSRNP3Q8WYN3 585 aa26.68■■□□□ 1.86
SHKBP1-228ENST00000602239 COL17A1Q9UMD9 1497 aaPredicted RBP26.68■■□□□ 1.86
SHKBP1-228ENST00000602239 MAP3K4Q9Y6R4 1608 aa26.66■■□□□ 1.86
SHKBP1-228ENST00000602239 P3H3Q8IVL6 736 aa26.66■■□□□ 1.86
SHKBP1-228ENST00000602239 ABCA8O94911 1581 aa26.65■■□□□ 1.86
SHKBP1-228ENST00000602239 WDR7Q9Y4E6 1490 aa26.64■■□□□ 1.86
SHKBP1-228ENST00000602239 KCNH8Q96L42 1107 aa26.63■■□□□ 1.85
SHKBP1-228ENST00000602239 ARID3CA6NKF2 412 aa26.57■■□□□ 1.84
SHKBP1-228ENST00000602239 TEX14Q8IWB6 1497 aa26.56■■□□□ 1.84
SHKBP1-228ENST00000602239 CD109Q6YHK3 1445 aa26.52■■□□□ 1.84
SHKBP1-228ENST00000602239 FAM9AQ8IZU1 332 aaPredicted RBP26.51■■□□□ 1.83
SHKBP1-228ENST00000602239 ATP10BO94823 1461 aa26.49■■□□□ 1.83
SHKBP1-228ENST00000602239 RANGAP1P46060 587 aaPredicted RBP26.48■■□□□ 1.83
SHKBP1-228ENST00000602239 MAGI3Q5TCQ9 1506 aa26.45■■□□□ 1.83
SHKBP1-228ENST00000602239 EEA1Q15075 1411 aa26.44■■□□□ 1.82
SHKBP1-228ENST00000602239 SAMD9Q5K651 1589 aa26.44■■□□□ 1.82
SHKBP1-228ENST00000602239 CFAP43Q8NDM7 1665 aa26.44■■□□□ 1.82
SHKBP1-228ENST00000602239 ADGRL1O94910 1474 aa26.42■■□□□ 1.82
SHKBP1-228ENST00000602239 FHOD3Q2V2M9 1422 aa26.34■■□□□ 1.81
SHKBP1-228ENST00000602239 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP26.34■■□□□ 1.81
SHKBP1-228ENST00000602239 HNRNPUL2Q1KMD3 747 aaKnown RBP26.34■■□□□ 1.81
SHKBP1-228ENST00000602239 RAPGEF6Q8TEU7 1601 aa26.34■■□□□ 1.81
SHKBP1-228ENST00000602239 NUP153P49790 1475 aaKnown RBP26.3■■□□□ 1.8
SHKBP1-228ENST00000602239 EHMT2Q96KQ7 1210 aa26.27■■□□□ 1.8
SHKBP1-228ENST00000602239 ABCA9Q8IUA7 1624 aa26.26■■□□□ 1.79
SHKBP1-228ENST00000602239 ARAP3Q8WWN8 1544 aa26.26■■□□□ 1.79
SHKBP1-228ENST00000602239 KIF21BO75037 1637 aa26.24■■□□□ 1.79
SHKBP1-228ENST00000602239 CHIC1Q5VXU3 224 aa26.23■■□□□ 1.79
SHKBP1-228ENST00000602239 RAPGEF3O95398 923 aa26.21■■□□□ 1.79
SHKBP1-228ENST00000602239 PLEKHD1A6NEE1 506 aa26.19■■□□□ 1.78
SHKBP1-228ENST00000602239 PHLDB1Q86UU1 1377 aa26.19■■□□□ 1.78
SHKBP1-228ENST00000602239 UBTFP17480 764 aaKnown RBP26.17■■□□□ 1.78
SHKBP1-228ENST00000602239 EFCAB5A4FU69 1503 aa26.14■■□□□ 1.78
SHKBP1-228ENST00000602239 NEO1Q92859 1461 aa26.13■■□□□ 1.77
SHKBP1-228ENST00000602239 CDK13Q14004 1512 aaKnown RBP26.06■■□□□ 1.76
SHKBP1-228ENST00000602239 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP26.05■■□□□ 1.76
SHKBP1-228ENST00000602239 FRMPD1Q5SYB0 1578 aa26.04■■□□□ 1.76
SHKBP1-228ENST00000602239 HECW2Q9P2P5 1572 aa26.04■■□□□ 1.76
SHKBP1-228ENST00000602239 ATP1B4Q9UN42 357 aaPredicted RBP26.04■■□□□ 1.76
SHKBP1-228ENST00000602239 ARHGAP35Q9NRY4 1499 aa26.02■■□□□ 1.76
SHKBP1-228ENST00000602239 AKNAQ7Z591 1439 aa26.01■■□□□ 1.75
SHKBP1-228ENST00000602239 TTC37Q6PGP7 1564 aa25.99■■□□□ 1.75
SHKBP1-228ENST00000602239 FANCAO15360 1455 aa25.99■■□□□ 1.75
SHKBP1-228ENST00000602239 DENND4BO75064 1496 aaPredicted RBP25.98■■□□□ 1.75
SHKBP1-228ENST00000602239 FMN1Q68DA7 1419 aa25.96■■□□□ 1.75
SHKBP1-228ENST00000602239 ARID4BQ4LE39 1312 aaPredicted RBP25.95■■□□□ 1.75
SHKBP1-228ENST00000602239 ADAMTSL3P82987 1691 aa25.93■■□□□ 1.74
SHKBP1-228ENST00000602239 RICTORQ6R327 1708 aa25.92■■□□□ 1.74
SHKBP1-228ENST00000602239 PTPRMP28827 1452 aa25.91■■□□□ 1.74
SHKBP1-228ENST00000602239 PLCH2O75038 1416 aa25.89■■□□□ 1.74
SHKBP1-228ENST00000602239 ILDR1Q86SU0 546 aaPredicted RBP25.89■■□□□ 1.74
SHKBP1-228ENST00000602239 HECW1Q76N89 1606 aa25.88■■□□□ 1.73
SHKBP1-228ENST00000602239 CFAP74Q9C0B2 1584 aa25.88■■□□□ 1.73
SHKBP1-228ENST00000602239 BCORL1Q5H9F3 1711 aa25.88■■□□□ 1.73
SHKBP1-228ENST00000602239 CDK11AQ9UQ88 783 aaPredicted RBP25.87■■□□□ 1.73
SHKBP1-228ENST00000602239 ARHGEF40Q8TER5 1519 aa25.86■■□□□ 1.73
SHKBP1-228ENST00000602239 SCAPERQ9BY12 1400 aa25.85■■□□□ 1.73
SHKBP1-228ENST00000602239 YEATS2Q9ULM3 1422 aa25.85■■□□□ 1.73
SHKBP1-228ENST00000602239 EFCAB2Q5VUJ9 269 aa25.82■■□□□ 1.72
SHKBP1-228ENST00000602239 MADDQ8WXG6 1647 aa25.81■■□□□ 1.72
SHKBP1-228ENST00000602239 ZMYM4Q5VZL5 1548 aa25.81■■□□□ 1.72
SHKBP1-228ENST00000602239 KIF14Q15058 1648 aa25.8■■□□□ 1.72
SHKBP1-228ENST00000602239 TROQ12816 1431 aaPredicted RBP25.8■■□□□ 1.72
Retrieved 100 of 20,778 RNA–protein pairs in 46 ms