RNA–Protein interactions for RNA: ENST00000602029.1

VRK3-226, Transcript of vaccinia related kinase 3, humanhuman

TSL 2

Gene VRK3, Length 578 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-226ENST00000602029 ABCA10Q8WWZ4 1543 aa9.19□□□□□ -0.94
VRK3-226ENST00000602029 ABCA5Q8WWZ7 1642 aa9.19□□□□□ -0.94
VRK3-226ENST00000602029 GRIN2AQ12879 1464 aa9.18□□□□□ -0.94
VRK3-226ENST00000602029 PPRC1Q5VV67 1664 aaKnown RBP9.17□□□□□ -0.94
VRK3-226ENST00000602029 MAPKBP1O60336 1514 aa9.17□□□□□ -0.94
VRK3-226ENST00000602029 NUP160Q12769 1436 aa9.16□□□□□ -0.94
VRK3-226ENST00000602029 NPM1P06748 294 aaKnown RBP eCLIP9.16□□□□□ -0.94
VRK3-226ENST00000602029 ADCY10Q96PN6 1610 aa9.16□□□□□ -0.94
VRK3-226ENST00000602029 LMTK3Q96Q04 1460 aa9.15□□□□□ -0.94
VRK3-226ENST00000602029 ADAMTS12P58397 1594 aa9.15□□□□□ -0.95
VRK3-226ENST00000602029 FHAD1B1AJZ9 1412 aa9.14□□□□□ -0.95
VRK3-226ENST00000602029 TTBK1Q5TCY1 1321 aaPredicted RBP9.14□□□□□ -0.95
VRK3-226ENST00000602029 ILDR2Q71H61 639 aa9.14□□□□□ -0.95
VRK3-226ENST00000602029 PRG4Q92954 1404 aaPredicted RBP9.12□□□□□ -0.95
VRK3-226ENST00000602029 TOP2BQ02880 1626 aa9.09□□□□□ -0.95
VRK3-226ENST00000602029 JPH4Q96JJ6 628 aa9.09□□□□□ -0.95
VRK3-226ENST00000602029 COL17A1Q9UMD9 1497 aaPredicted RBP9.08□□□□□ -0.96
VRK3-226ENST00000602029 ERICH3Q5RHP9 1530 aa9.08□□□□□ -0.96
VRK3-226ENST00000602029 BIVM-ERCC5R4GMW8 1640 aa9.08□□□□□ -0.96
VRK3-226ENST00000602029 SOCS7O14512 581 aa9.07□□□□□ -0.96
VRK3-226ENST00000602029 RUSC2Q8N2Y8 1516 aa9.03□□□□□ -0.96
VRK3-226ENST00000602029 KIF27Q86VH2 1401 aa9□□□□□ -0.97
VRK3-226ENST00000602029 CUL7Q14999 1698 aa9□□□□□ -0.97
VRK3-226ENST00000602029 GLI2P10070 1586 aa8.99□□□□□ -0.97
VRK3-226ENST00000602029 DISP3Q9P2K9 1392 aa8.99□□□□□ -0.97
VRK3-226ENST00000602029 KIF21BO75037 1637 aa8.98□□□□□ -0.97
VRK3-226ENST00000602029 MAP3K4Q9Y6R4 1608 aa8.98□□□□□ -0.97
VRK3-226ENST00000602029 PTPRGP23470 1445 aa8.97□□□□□ -0.97
VRK3-226ENST00000602029 KIAA0586Q9BVV6 1533 aa8.97□□□□□ -0.97
VRK3-226ENST00000602029 CARMIL2Q6F5E8 1435 aa8.97□□□□□ -0.97
VRK3-226ENST00000602029 IGF1RP08069 1367 aa8.95□□□□□ -0.98
VRK3-226ENST00000602029 CARMIL1Q5VZK9 1371 aa8.94□□□□□ -0.98
VRK3-226ENST00000602029 ASXL2Q76L83 1435 aa8.94□□□□□ -0.98
VRK3-226ENST00000602029 SPATA31D1Q6ZQQ2 1576 aa8.94□□□□□ -0.98
VRK3-226ENST00000602029 ABCC2Q92887 1545 aa8.93□□□□□ -0.98
VRK3-226ENST00000602029 TNIKQ9UKE5 1360 aa8.92□□□□□ -0.98
VRK3-226ENST00000602029 ADAMTSL3P82987 1691 aa8.91□□□□□ -0.98
VRK3-226ENST00000602029 PCF11O94913 1555 aaKnown RBP8.9□□□□□ -0.99
VRK3-226ENST00000602029 EPRSP07814 1512 aaKnown RBP8.9□□□□□ -0.99
VRK3-226ENST00000602029 IQGAP2Q13576 1575 aa8.89□□□□□ -0.99
VRK3-226ENST00000602029 PTPRMP28827 1452 aa8.89□□□□□ -0.99
VRK3-226ENST00000602029 PLB1Q6P1J6 1458 aa8.89□□□□□ -0.99
VRK3-226ENST00000602029 FAM9AQ8IZU1 332 aaPredicted RBP8.88□□□□□ -0.99
VRK3-226ENST00000602029 UACAQ9BZF9 1416 aa8.87□□□□□ -0.99
VRK3-226ENST00000602029 TEX14Q8IWB6 1497 aa8.86□□□□□ -0.99
VRK3-226ENST00000602029 CERKQ8TCT0 537 aa8.86□□□□□ -0.99
VRK3-226ENST00000602029 ZCCHC11Q5TAX3 1644 aaKnown RBP8.86□□□□□ -0.99
VRK3-226ENST00000602029 MADDQ8WXG6 1647 aa8.85□□□□□ -0.99
VRK3-226ENST00000602029 ARID3CA6NKF2 412 aa8.85□□□□□ -0.99
VRK3-226ENST00000602029 KCNH8Q96L42 1107 aa8.85□□□□□ -0.99
VRK3-226ENST00000602029 RAPGEF2Q9Y4G8 1499 aa8.83□□□□□ -1
VRK3-226ENST00000602029 BCORL1Q5H9F3 1711 aa8.83□□□□□ -1
VRK3-226ENST00000602029 RIMS1Q86UR5 1692 aaKnown RBP8.82□□□□□ -1
VRK3-226ENST00000602029 HSPA2P54652 639 aa8.82□□□□□ -1
VRK3-226ENST00000602029 UHRF1BP1LA0JNW5 1464 aa8.82□□□□□ -1
VRK3-226ENST00000602029 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP8.81□□□□□ -1
VRK3-226ENST00000602029 HNRNPUL2Q1KMD3 747 aaKnown RBP8.81□□□□□ -1
VRK3-226ENST00000602029 DISP1Q96F81 1524 aa8.8□□□□□ -1
VRK3-226ENST00000602029 KDM5BQ9UGL1 1544 aa8.8□□□□□ -1
VRK3-226ENST00000602029 RANGAP1P46060 587 aaPredicted RBP8.8□□□□□ -1
VRK3-226ENST00000602029 CFAP43Q8NDM7 1665 aa8.8□□□□□ -1
VRK3-226ENST00000602029 P3H3Q8IVL6 736 aa8.79□□□□□ -1
VRK3-226ENST00000602029 KIAA0556O60303 1618 aa8.79□□□□□ -1
VRK3-226ENST00000602029 WDR7Q9Y4E6 1490 aa8.78□□□□□ -1
VRK3-226ENST00000602029 SENP3Q9H4L4 574 aaPredicted RBP8.78□□□□□ -1
VRK3-226ENST00000602029 UGGT2Q9NYU1 1516 aa8.78□□□□□ -1
VRK3-226ENST00000602029 GOLGA3Q08378 1498 aa8.77□□□□□ -1
VRK3-226ENST00000602029 MAGI3Q5TCQ9 1506 aa8.77□□□□□ -1.01
VRK3-226ENST00000602029 CD109Q6YHK3 1445 aa8.77□□□□□ -1.01
VRK3-226ENST00000602029 STRCQ7RTU9 1775 aa8.76□□□□□ -1.01
VRK3-226ENST00000602029 SIGLEC1Q9BZZ2 1709 aa8.75□□□□□ -1.01
VRK3-226ENST00000602029 ARID4BQ4LE39 1312 aaPredicted RBP8.75□□□□□ -1.01
VRK3-226ENST00000602029 PLPPR3Q6T4P5 718 aa8.74□□□□□ -1.01
VRK3-226ENST00000602029 FRMPD1Q5SYB0 1578 aa8.73□□□□□ -1.01
VRK3-226ENST00000602029 CTTNBP2Q8WZ74 1663 aa8.72□□□□□ -1.01
VRK3-226ENST00000602029 ARAP3Q8WWN8 1544 aa8.72□□□□□ -1.01
VRK3-226ENST00000602029 EHMT2Q96KQ7 1210 aa8.69□□□□□ -1.02
VRK3-226ENST00000602029 ABCA8O94911 1581 aa8.69□□□□□ -1.02
VRK3-226ENST00000602029 RAPGEF3O95398 923 aa8.68□□□□□ -1.02
VRK3-226ENST00000602029 ATP1B4Q9UN42 357 aaPredicted RBP8.68□□□□□ -1.02
VRK3-226ENST00000602029 FER1L4A9Z1Z3 1794 aa8.68□□□□□ -1.02
VRK3-226ENST00000602029 PREX1Q8TCU6 1659 aa8.67□□□□□ -1.02
VRK3-226ENST00000602029 LTBP4Q8N2S1 1624 aa8.65□□□□□ -1.02
VRK3-226ENST00000602029 ARHGEF40Q8TER5 1519 aa8.65□□□□□ -1.02
VRK3-226ENST00000602029 CSRNP3Q8WYN3 585 aa8.65□□□□□ -1.02
VRK3-226ENST00000602029 ATP10BO94823 1461 aa8.64□□□□□ -1.03
VRK3-226ENST00000602029 PRXQ9BXM0 1461 aa8.64□□□□□ -1.03
VRK3-226ENST00000602029 RICTORQ6R327 1708 aa8.64□□□□□ -1.03
VRK3-226ENST00000602029 PLEKHD1A6NEE1 506 aa8.64□□□□□ -1.03
VRK3-226ENST00000602029 PHF23Q9BUL5 403 aaPredicted RBP8.64□□□□□ -1.03
VRK3-226ENST00000602029 MYT1LQ9UL68 1186 aa8.64□□□□□ -1.03
VRK3-226ENST00000602029 MLECQ14165 292 aa8.63□□□□□ -1.03
VRK3-226ENST00000602029 TTC37Q6PGP7 1564 aa8.63□□□□□ -1.03
VRK3-226ENST00000602029 ABCA9Q8IUA7 1624 aa8.62□□□□□ -1.03
VRK3-226ENST00000602029 MED1Q15648 1581 aaPredicted RBP8.62□□□□□ -1.03
VRK3-226ENST00000602029 FHOD3Q2V2M9 1422 aa8.62□□□□□ -1.03
VRK3-226ENST00000602029 RAPGEF6Q8TEU7 1601 aa8.62□□□□□ -1.03
VRK3-226ENST00000602029 PHLDB1Q86UU1 1377 aa8.61□□□□□ -1.03
VRK3-226ENST00000602029 YEATS2Q9ULM3 1422 aa8.61□□□□□ -1.03
VRK3-226ENST00000602029 NEO1Q92859 1461 aa8.6□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms