RNA–Protein interactions for RNA: ENST00000600259.5

VRK3-220, Transcript of vaccinia related kinase 3, humanhuman

TSL 2

Gene VRK3, Length 572 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-220ENST00000600259 IGF1RP08069 1367 aa10.94□□□□□ -0.66
VRK3-220ENST00000600259 FAM69CQ0P6D2 419 aa10.93□□□□□ -0.66
VRK3-220ENST00000600259 ABCC10Q5T3U5 1492 aa10.92□□□□□ -0.66
VRK3-220ENST00000600259 KIF13AQ9H1H9 1805 aa10.91□□□□□ -0.66
VRK3-220ENST00000600259 NPM1P06748 294 aaKnown RBP eCLIP10.89□□□□□ -0.67
VRK3-220ENST00000600259 RUSC2Q8N2Y8 1516 aa10.89□□□□□ -0.67
VRK3-220ENST00000600259 KIAA0586Q9BVV6 1533 aa10.89□□□□□ -0.67
VRK3-220ENST00000600259 MAPKBP1O60336 1514 aa10.87□□□□□ -0.67
VRK3-220ENST00000600259 ADCY10Q96PN6 1610 aa10.85□□□□□ -0.67
VRK3-220ENST00000600259 KDM4FA0A1W2PPD8 638 aa10.85□□□□□ -0.67
VRK3-220ENST00000600259 KIF27Q86VH2 1401 aa10.84□□□□□ -0.67
VRK3-220ENST00000600259 DIP2BQ9P265 1576 aa10.83□□□□□ -0.68
VRK3-220ENST00000600259 CARMIL1Q5VZK9 1371 aa10.82□□□□□ -0.68
VRK3-220ENST00000600259 PTPRGP23470 1445 aa10.82□□□□□ -0.68
VRK3-220ENST00000600259 TNIKQ9UKE5 1360 aa10.78□□□□□ -0.68
VRK3-220ENST00000600259 CUL7Q14999 1698 aa10.76□□□□□ -0.69
VRK3-220ENST00000600259 ABCC2Q92887 1545 aa10.76□□□□□ -0.69
VRK3-220ENST00000600259 TTBK1Q5TCY1 1321 aaPredicted RBP10.75□□□□□ -0.69
VRK3-220ENST00000600259 CARMIL2Q6F5E8 1435 aa10.75□□□□□ -0.69
VRK3-220ENST00000600259 ASXL2Q76L83 1435 aa10.75□□□□□ -0.69
VRK3-220ENST00000600259 KDM6BO15054 1643 aa10.74□□□□□ -0.69
VRK3-220ENST00000600259 UHRF1BP1LA0JNW5 1464 aa10.74□□□□□ -0.69
VRK3-220ENST00000600259 UACAQ9BZF9 1416 aa10.73□□□□□ -0.69
VRK3-220ENST00000600259 PLB1Q6P1J6 1458 aa10.73□□□□□ -0.69
VRK3-220ENST00000600259 COL17A1Q9UMD9 1497 aaPredicted RBP10.73□□□□□ -0.69
VRK3-220ENST00000600259 DISP1Q96F81 1524 aa10.73□□□□□ -0.69
VRK3-220ENST00000600259 GLI2P10070 1586 aa10.72□□□□□ -0.69
VRK3-220ENST00000600259 PHF23Q9BUL5 403 aaPredicted RBP10.71□□□□□ -0.69
VRK3-220ENST00000600259 TSPOAP1O95153 1857 aa10.7□□□□□ -0.7
VRK3-220ENST00000600259 IQGAP2Q13576 1575 aa10.69□□□□□ -0.7
VRK3-220ENST00000600259 KDM5BQ9UGL1 1544 aa10.69□□□□□ -0.7
VRK3-220ENST00000600259 PPRC1Q5VV67 1664 aaKnown RBP10.69□□□□□ -0.7
VRK3-220ENST00000600259 EPRSP07814 1512 aaKnown RBP10.68□□□□□ -0.7
VRK3-220ENST00000600259 UGGT2Q9NYU1 1516 aa10.68□□□□□ -0.7
VRK3-220ENST00000600259 RAPGEF2Q9Y4G8 1499 aa10.67□□□□□ -0.7
VRK3-220ENST00000600259 ILDR1Q86SU0 546 aaPredicted RBP10.63□□□□□ -0.71
VRK3-220ENST00000600259 ADGRL1O94910 1474 aa10.62□□□□□ -0.71
VRK3-220ENST00000600259 MAP3K4Q9Y6R4 1608 aa10.62□□□□□ -0.71
VRK3-220ENST00000600259 KIAA0556O60303 1618 aa10.6□□□□□ -0.71
VRK3-220ENST00000600259 TEX14Q8IWB6 1497 aa10.6□□□□□ -0.71
VRK3-220ENST00000600259 ZCCHC11Q5TAX3 1644 aaKnown RBP10.59□□□□□ -0.71
VRK3-220ENST00000600259 WDR7Q9Y4E6 1490 aa10.59□□□□□ -0.71
VRK3-220ENST00000600259 PRXQ9BXM0 1461 aa10.57□□□□□ -0.72
VRK3-220ENST00000600259 KCNH8Q96L42 1107 aa10.57□□□□□ -0.72
VRK3-220ENST00000600259 MAGI3Q5TCQ9 1506 aa10.57□□□□□ -0.72
VRK3-220ENST00000600259 CD109Q6YHK3 1445 aa10.57□□□□□ -0.72
VRK3-220ENST00000600259 ABCA8O94911 1581 aa10.56□□□□□ -0.72
VRK3-220ENST00000600259 SENP3Q9H4L4 574 aaPredicted RBP10.54□□□□□ -0.72
VRK3-220ENST00000600259 GOLGA3Q08378 1498 aa10.54□□□□□ -0.72
VRK3-220ENST00000600259 ATP10BO94823 1461 aa10.52□□□□□ -0.73
VRK3-220ENST00000600259 P3H3Q8IVL6 736 aa10.5□□□□□ -0.73
VRK3-220ENST00000600259 HECW2Q9P2P5 1572 aa10.5□□□□□ -0.73
VRK3-220ENST00000600259 ARAP3Q8WWN8 1544 aa10.49□□□□□ -0.73
VRK3-220ENST00000600259 CFAP43Q8NDM7 1665 aa10.48□□□□□ -0.73
VRK3-220ENST00000600259 ARID3CA6NKF2 412 aa10.48□□□□□ -0.73
VRK3-220ENST00000600259 CTTNBP2Q8WZ74 1663 aa10.47□□□□□ -0.73
VRK3-220ENST00000600259 RAPGEF3O95398 923 aa10.46□□□□□ -0.73
VRK3-220ENST00000600259 CSRNP3Q8WYN3 585 aa10.46□□□□□ -0.73
VRK3-220ENST00000600259 PHLDB1Q86UU1 1377 aa10.46□□□□□ -0.74
VRK3-220ENST00000600259 ABCA9Q8IUA7 1624 aa10.42□□□□□ -0.74
VRK3-220ENST00000600259 FAM9AQ8IZU1 332 aaPredicted RBP10.41□□□□□ -0.74
VRK3-220ENST00000600259 PTPRMP28827 1452 aa10.41□□□□□ -0.74
VRK3-220ENST00000600259 NEO1Q92859 1461 aa10.41□□□□□ -0.74
VRK3-220ENST00000600259 KIF21BO75037 1637 aa10.4□□□□□ -0.74
VRK3-220ENST00000600259 SAMD9Q5K651 1589 aa10.4□□□□□ -0.74
VRK3-220ENST00000600259 NUP153P49790 1475 aaKnown RBP10.4□□□□□ -0.74
VRK3-220ENST00000600259 ADAMTSL3P82987 1691 aa10.39□□□□□ -0.75
VRK3-220ENST00000600259 FBXO41Q8TF61 875 aa10.38□□□□□ -0.75
VRK3-220ENST00000600259 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP10.37□□□□□ -0.75
VRK3-220ENST00000600259 HNRNPUL2Q1KMD3 747 aaKnown RBP10.37□□□□□ -0.75
VRK3-220ENST00000600259 RAPGEF6Q8TEU7 1601 aa10.36□□□□□ -0.75
VRK3-220ENST00000600259 FRMPD1Q5SYB0 1578 aa10.36□□□□□ -0.75
VRK3-220ENST00000600259 PLEKHD1A6NEE1 506 aa10.36□□□□□ -0.75
VRK3-220ENST00000600259 FHOD3Q2V2M9 1422 aa10.35□□□□□ -0.75
VRK3-220ENST00000600259 AKNAQ7Z591 1439 aa10.34□□□□□ -0.75
VRK3-220ENST00000600259 RANGAP1P46060 587 aaPredicted RBP10.34□□□□□ -0.75
VRK3-220ENST00000600259 ARID4BQ4LE39 1312 aaPredicted RBP10.33□□□□□ -0.76
VRK3-220ENST00000600259 DENND4BO75064 1496 aaPredicted RBP10.33□□□□□ -0.76
VRK3-220ENST00000600259 BCORL1Q5H9F3 1711 aa10.33□□□□□ -0.76
VRK3-220ENST00000600259 EEA1Q15075 1411 aa10.33□□□□□ -0.76
VRK3-220ENST00000600259 LMTK3Q96Q04 1460 aa10.32□□□□□ -0.76
VRK3-220ENST00000600259 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP10.31□□□□□ -0.76
VRK3-220ENST00000600259 FANCAO15360 1455 aa10.3□□□□□ -0.76
VRK3-220ENST00000600259 MADDQ8WXG6 1647 aa10.3□□□□□ -0.76
VRK3-220ENST00000600259 YEATS2Q9ULM3 1422 aa10.3□□□□□ -0.76
VRK3-220ENST00000600259 HSPA2P54652 639 aa10.29□□□□□ -0.76
VRK3-220ENST00000600259 PCF11O94913 1555 aaKnown RBP10.29□□□□□ -0.76
VRK3-220ENST00000600259 RICTORQ6R327 1708 aa10.28□□□□□ -0.76
VRK3-220ENST00000600259 PLCH2O75038 1416 aa10.28□□□□□ -0.76
VRK3-220ENST00000600259 ARHGEF40Q8TER5 1519 aa10.28□□□□□ -0.76
VRK3-220ENST00000600259 MAGI2Q86UL8 1455 aa10.27□□□□□ -0.77
VRK3-220ENST00000600259 ZMYM4Q5VZL5 1548 aa10.27□□□□□ -0.77
VRK3-220ENST00000600259 SCAPERQ9BY12 1400 aa10.26□□□□□ -0.77
VRK3-220ENST00000600259 SIGLEC1Q9BZZ2 1709 aa10.26□□□□□ -0.77
VRK3-220ENST00000600259 TTC37Q6PGP7 1564 aa10.26□□□□□ -0.77
VRK3-220ENST00000600259 EFCAB5A4FU69 1503 aa10.25□□□□□ -0.77
VRK3-220ENST00000600259 CDK13Q14004 1512 aaKnown RBP10.25□□□□□ -0.77
VRK3-220ENST00000600259 POGZQ7Z3K3 1410 aa10.24□□□□□ -0.77
VRK3-220ENST00000600259 MLECQ14165 292 aa10.24□□□□□ -0.77
VRK3-220ENST00000600259 EFCAB2Q5VUJ9 269 aa10.24□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 18.1 ms