RNA–Protein interactions for RNA: ENST00000600236.1

HIF3A-217, Transcript of hypoxia inducible factor 3 subunit alpha, humanhuman

TSL 3

Gene HIF3A, Length 313 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HIF3A-217ENST00000600236 RUSC2Q8N2Y8 1516 aa19.81■□□□□ 0.76
HIF3A-217ENST00000600236 CUL7Q14999 1698 aa19.79■□□□□ 0.76
HIF3A-217ENST00000600236 KIAA0586Q9BVV6 1533 aa19.76■□□□□ 0.75
HIF3A-217ENST00000600236 CARMIL1Q5VZK9 1371 aa19.72■□□□□ 0.75
HIF3A-217ENST00000600236 NPM1P06748 294 aaKnown RBP eCLIP19.69■□□□□ 0.74
HIF3A-217ENST00000600236 CARMIL2Q6F5E8 1435 aa19.6■□□□□ 0.73
HIF3A-217ENST00000600236 MAPKBP1O60336 1514 aa19.57■□□□□ 0.72
HIF3A-217ENST00000600236 PTPRGP23470 1445 aa19.57■□□□□ 0.72
HIF3A-217ENST00000600236 RAPGEF2Q9Y4G8 1499 aa19.55■□□□□ 0.72
HIF3A-217ENST00000600236 IQGAP2Q13576 1575 aa19.55■□□□□ 0.72
HIF3A-217ENST00000600236 TNIKQ9UKE5 1360 aa19.55■□□□□ 0.72
HIF3A-217ENST00000600236 ADCY10Q96PN6 1610 aa19.54■□□□□ 0.72
HIF3A-217ENST00000600236 ABCC10Q5T3U5 1492 aa19.54■□□□□ 0.72
HIF3A-217ENST00000600236 FAM69CQ0P6D2 419 aa19.54■□□□□ 0.72
HIF3A-217ENST00000600236 TTBK1Q5TCY1 1321 aaPredicted RBP19.51■□□□□ 0.71
HIF3A-217ENST00000600236 KIF13AQ9H1H9 1805 aa19.48■□□□□ 0.71
HIF3A-217ENST00000600236 AEBP2Q6ZN18 517 aaPredicted RBP19.47■□□□□ 0.71
HIF3A-217ENST00000600236 DIP2BQ9P265 1576 aa19.46■□□□□ 0.71
HIF3A-217ENST00000600236 ABCC2Q92887 1545 aa19.44■□□□□ 0.7
HIF3A-217ENST00000600236 UGGT2Q9NYU1 1516 aa19.44■□□□□ 0.7
HIF3A-217ENST00000600236 DISP1Q96F81 1524 aa19.43■□□□□ 0.7
HIF3A-217ENST00000600236 UACAQ9BZF9 1416 aa19.42■□□□□ 0.7
HIF3A-217ENST00000600236 UHRF1BP1LA0JNW5 1464 aa19.41■□□□□ 0.7
HIF3A-217ENST00000600236 PLB1Q6P1J6 1458 aa19.38■□□□□ 0.69
HIF3A-217ENST00000600236 KIAA0556O60303 1618 aa19.37■□□□□ 0.69
HIF3A-217ENST00000600236 GOLGA3Q08378 1498 aa19.35■□□□□ 0.69
HIF3A-217ENST00000600236 ASXL2Q76L83 1435 aa19.35■□□□□ 0.69
HIF3A-217ENST00000600236 PRXQ9BXM0 1461 aa19.35■□□□□ 0.69
HIF3A-217ENST00000600236 KDM5BQ9UGL1 1544 aa19.31■□□□□ 0.68
HIF3A-217ENST00000600236 CTTNBP2Q8WZ74 1663 aa19.31■□□□□ 0.68
HIF3A-217ENST00000600236 KDM6BO15054 1643 aa19.3■□□□□ 0.68
HIF3A-217ENST00000600236 GLI2P10070 1586 aa19.29■□□□□ 0.68
HIF3A-217ENST00000600236 FAM9AQ8IZU1 332 aaPredicted RBP19.29■□□□□ 0.68
HIF3A-217ENST00000600236 CSRNP3Q8WYN3 585 aa19.25■□□□□ 0.67
HIF3A-217ENST00000600236 EPRSP07814 1512 aaKnown RBP19.24■□□□□ 0.67
HIF3A-217ENST00000600236 TSPOAP1O95153 1857 aa19.24■□□□□ 0.67
HIF3A-217ENST00000600236 ZCCHC11Q5TAX3 1644 aaKnown RBP19.22■□□□□ 0.67
HIF3A-217ENST00000600236 EEA1Q15075 1411 aa19.22■□□□□ 0.67
HIF3A-217ENST00000600236 WDR7Q9Y4E6 1490 aa19.2■□□□□ 0.66
HIF3A-217ENST00000600236 TEX14Q8IWB6 1497 aa19.19■□□□□ 0.66
HIF3A-217ENST00000600236 ABCA8O94911 1581 aa19.18■□□□□ 0.66
HIF3A-217ENST00000600236 MAP3K4Q9Y6R4 1608 aa19.14■□□□□ 0.66
HIF3A-217ENST00000600236 PPRC1Q5VV67 1664 aaKnown RBP19.13■□□□□ 0.65
HIF3A-217ENST00000600236 P3H3Q8IVL6 736 aa19.12■□□□□ 0.65
HIF3A-217ENST00000600236 KCNH8Q96L42 1107 aa19.1■□□□□ 0.65
HIF3A-217ENST00000600236 CD109Q6YHK3 1445 aa19.08■□□□□ 0.64
HIF3A-217ENST00000600236 SAMD9Q5K651 1589 aa19.07■□□□□ 0.64
HIF3A-217ENST00000600236 MAGI3Q5TCQ9 1506 aa19.05■□□□□ 0.64
HIF3A-217ENST00000600236 ARID3CA6NKF2 412 aa19.04■□□□□ 0.64
HIF3A-217ENST00000600236 COL17A1Q9UMD9 1497 aaPredicted RBP19.03■□□□□ 0.64
HIF3A-217ENST00000600236 KDM4FA0A1W2PPD8 638 aa19.03■□□□□ 0.64
HIF3A-217ENST00000600236 CFAP43Q8NDM7 1665 aa19.03■□□□□ 0.64
HIF3A-217ENST00000600236 ATP10BO94823 1461 aa19.03■□□□□ 0.64
HIF3A-217ENST00000600236 RANGAP1P46060 587 aaPredicted RBP19.02■□□□□ 0.64
HIF3A-217ENST00000600236 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP19.01■□□□□ 0.63
HIF3A-217ENST00000600236 HNRNPUL2Q1KMD3 747 aaKnown RBP19.01■□□□□ 0.63
HIF3A-217ENST00000600236 RAPGEF6Q8TEU7 1601 aa19■□□□□ 0.63
HIF3A-217ENST00000600236 KIF21BO75037 1637 aa18.99■□□□□ 0.63
HIF3A-217ENST00000600236 FHOD3Q2V2M9 1422 aa18.97■□□□□ 0.63
HIF3A-217ENST00000600236 EFCAB5A4FU69 1503 aa18.95■□□□□ 0.62
HIF3A-217ENST00000600236 ADGRL1O94910 1474 aa18.94■□□□□ 0.62
HIF3A-217ENST00000600236 PHLDB1Q86UU1 1377 aa18.93■□□□□ 0.62
HIF3A-217ENST00000600236 NUP153P49790 1475 aaKnown RBP18.92■□□□□ 0.62
HIF3A-217ENST00000600236 CHIC1Q5VXU3 224 aa18.92■□□□□ 0.62
HIF3A-217ENST00000600236 ABCA9Q8IUA7 1624 aa18.9■□□□□ 0.62
HIF3A-217ENST00000600236 UBTFP17480 764 aaKnown RBP18.9■□□□□ 0.62
HIF3A-217ENST00000600236 PLEKHD1A6NEE1 506 aa18.89■□□□□ 0.61
HIF3A-217ENST00000600236 ARAP3Q8WWN8 1544 aa18.89■□□□□ 0.61
HIF3A-217ENST00000600236 NEO1Q92859 1461 aa18.85■□□□□ 0.61
HIF3A-217ENST00000600236 EHMT2Q96KQ7 1210 aa18.84■□□□□ 0.61
HIF3A-217ENST00000600236 FMN1Q68DA7 1419 aa18.82■□□□□ 0.6
HIF3A-217ENST00000600236 RAPGEF3O95398 923 aa18.77■□□□□ 0.6
HIF3A-217ENST00000600236 ATP1B4Q9UN42 357 aaPredicted RBP18.77■□□□□ 0.6
HIF3A-217ENST00000600236 CDK11AQ9UQ88 783 aaPredicted RBP18.75■□□□□ 0.59
HIF3A-217ENST00000600236 ARHGAP35Q9NRY4 1499 aa18.75■□□□□ 0.59
HIF3A-217ENST00000600236 HECW1Q76N89 1606 aa18.74■□□□□ 0.59
HIF3A-217ENST00000600236 CDK13Q14004 1512 aaKnown RBP18.74■□□□□ 0.59
HIF3A-217ENST00000600236 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP18.74■□□□□ 0.59
HIF3A-217ENST00000600236 FANCAO15360 1455 aa18.73■□□□□ 0.59
HIF3A-217ENST00000600236 DENND4BO75064 1496 aaPredicted RBP18.73■□□□□ 0.59
HIF3A-217ENST00000600236 AKNAQ7Z591 1439 aa18.73■□□□□ 0.59
HIF3A-217ENST00000600236 CFAP74Q9C0B2 1584 aa18.72■□□□□ 0.59
HIF3A-217ENST00000600236 TTC37Q6PGP7 1564 aa18.68■□□□□ 0.58
HIF3A-217ENST00000600236 ARID4BQ4LE39 1312 aaPredicted RBP18.68■□□□□ 0.58
HIF3A-217ENST00000600236 FRMPD1Q5SYB0 1578 aa18.68■□□□□ 0.58
HIF3A-217ENST00000600236 PLCH2O75038 1416 aa18.66■□□□□ 0.58
HIF3A-217ENST00000600236 CLIP1P30622 1438 aa18.66■□□□□ 0.58
HIF3A-217ENST00000600236 ARHGEF40Q8TER5 1519 aa18.64■□□□□ 0.57
HIF3A-217ENST00000600236 HECW2Q9P2P5 1572 aa18.64■□□□□ 0.57
HIF3A-217ENST00000600236 EFCAB2Q5VUJ9 269 aa18.62■□□□□ 0.57
HIF3A-217ENST00000600236 TROQ12816 1431 aaPredicted RBP18.62■□□□□ 0.57
HIF3A-217ENST00000600236 KIF14Q15058 1648 aa18.61■□□□□ 0.57
HIF3A-217ENST00000600236 MAGI2Q86UL8 1455 aa18.61■□□□□ 0.57
HIF3A-217ENST00000600236 ZMYM4Q5VZL5 1548 aa18.6■□□□□ 0.57
HIF3A-217ENST00000600236 SCAPERQ9BY12 1400 aa18.6■□□□□ 0.57
HIF3A-217ENST00000600236 RICTORQ6R327 1708 aa18.6■□□□□ 0.57
HIF3A-217ENST00000600236 CCDC18Q5T9S5 1454 aa18.59■□□□□ 0.57
HIF3A-217ENST00000600236 POGZQ7Z3K3 1410 aa18.59■□□□□ 0.57
HIF3A-217ENST00000600236 ZFYVE16Q7Z3T8 1539 aa18.59■□□□□ 0.57
HIF3A-217ENST00000600236 PTPRMP28827 1452 aa18.58■□□□□ 0.57
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms