RNA–Protein interactions for RNA: ENST00000597968.1

TRIM28-211, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 504 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-211ENST00000597968 RUSC2Q8N2Y8 1516 aa23.74■■□□□ 1.39
TRIM28-211ENST00000597968 CUL7Q14999 1698 aa23.73■■□□□ 1.39
TRIM28-211ENST00000597968 KIAA0586Q9BVV6 1533 aa23.71■■□□□ 1.39
TRIM28-211ENST00000597968 CARMIL1Q5VZK9 1371 aa23.61■■□□□ 1.37
TRIM28-211ENST00000597968 NPM1P06748 294 aaKnown RBP eCLIP23.59■■□□□ 1.37
TRIM28-211ENST00000597968 MAPKBP1O60336 1514 aa23.54■■□□□ 1.36
TRIM28-211ENST00000597968 ABCC10Q5T3U5 1492 aa23.5■■□□□ 1.35
TRIM28-211ENST00000597968 CARMIL2Q6F5E8 1435 aa23.5■■□□□ 1.35
TRIM28-211ENST00000597968 ADCY10Q96PN6 1610 aa23.47■■□□□ 1.35
TRIM28-211ENST00000597968 KIF13AQ9H1H9 1805 aa23.47■■□□□ 1.35
TRIM28-211ENST00000597968 PTPRGP23470 1445 aa23.45■■□□□ 1.34
TRIM28-211ENST00000597968 IQGAP2Q13576 1575 aa23.44■■□□□ 1.34
TRIM28-211ENST00000597968 TNIKQ9UKE5 1360 aa23.43■■□□□ 1.34
TRIM28-211ENST00000597968 FAM69CQ0P6D2 419 aa23.42■■□□□ 1.34
TRIM28-211ENST00000597968 RAPGEF2Q9Y4G8 1499 aa23.42■■□□□ 1.34
TRIM28-211ENST00000597968 DIP2BQ9P265 1576 aa23.38■■□□□ 1.33
TRIM28-211ENST00000597968 AEBP2Q6ZN18 517 aaPredicted RBP23.35■■□□□ 1.33
TRIM28-211ENST00000597968 UHRF1BP1LA0JNW5 1464 aa23.35■■□□□ 1.33
TRIM28-211ENST00000597968 ABCC2Q92887 1545 aa23.33■■□□□ 1.33
TRIM28-211ENST00000597968 UGGT2Q9NYU1 1516 aa23.33■■□□□ 1.33
TRIM28-211ENST00000597968 DISP1Q96F81 1524 aa23.31■■□□□ 1.32
TRIM28-211ENST00000597968 UACAQ9BZF9 1416 aa23.28■■□□□ 1.32
TRIM28-211ENST00000597968 PLB1Q6P1J6 1458 aa23.28■■□□□ 1.32
TRIM28-211ENST00000597968 ASXL2Q76L83 1435 aa23.21■■□□□ 1.31
TRIM28-211ENST00000597968 KDM5BQ9UGL1 1544 aa23.21■■□□□ 1.31
TRIM28-211ENST00000597968 GLI2P10070 1586 aa23.21■■□□□ 1.31
TRIM28-211ENST00000597968 KIAA0556O60303 1618 aa23.2■■□□□ 1.3
TRIM28-211ENST00000597968 PRXQ9BXM0 1461 aa23.19■■□□□ 1.3
TRIM28-211ENST00000597968 GOLGA3Q08378 1498 aa23.18■■□□□ 1.3
TRIM28-211ENST00000597968 TTBK1Q5TCY1 1321 aaPredicted RBP23.18■■□□□ 1.3
TRIM28-211ENST00000597968 KDM6BO15054 1643 aa23.16■■□□□ 1.3
TRIM28-211ENST00000597968 CTTNBP2Q8WZ74 1663 aa23.14■■□□□ 1.29
TRIM28-211ENST00000597968 EPRSP07814 1512 aaKnown RBP23.08■■□□□ 1.29
TRIM28-211ENST00000597968 TSPOAP1O95153 1857 aa23.07■■□□□ 1.28
TRIM28-211ENST00000597968 FAM9AQ8IZU1 332 aaPredicted RBP23.06■■□□□ 1.28
TRIM28-211ENST00000597968 ZCCHC11Q5TAX3 1644 aaKnown RBP23.06■■□□□ 1.28
TRIM28-211ENST00000597968 TEX14Q8IWB6 1497 aa23.05■■□□□ 1.28
TRIM28-211ENST00000597968 EEA1Q15075 1411 aa23.02■■□□□ 1.28
TRIM28-211ENST00000597968 WDR7Q9Y4E6 1490 aa23.02■■□□□ 1.28
TRIM28-211ENST00000597968 MAP3K4Q9Y6R4 1608 aa23.01■■□□□ 1.27
TRIM28-211ENST00000597968 PPRC1Q5VV67 1664 aaKnown RBP23.01■■□□□ 1.27
TRIM28-211ENST00000597968 CSRNP3Q8WYN3 585 aa23.01■■□□□ 1.27
TRIM28-211ENST00000597968 ABCA8O94911 1581 aa23.01■■□□□ 1.27
TRIM28-211ENST00000597968 MAGI3Q5TCQ9 1506 aa22.91■■□□□ 1.26
TRIM28-211ENST00000597968 KDM4FA0A1W2PPD8 638 aa22.89■■□□□ 1.25
TRIM28-211ENST00000597968 CFAP43Q8NDM7 1665 aa22.88■■□□□ 1.25
TRIM28-211ENST00000597968 CD109Q6YHK3 1445 aa22.88■■□□□ 1.25
TRIM28-211ENST00000597968 SAMD9Q5K651 1589 aa22.87■■□□□ 1.25
TRIM28-211ENST00000597968 COL17A1Q9UMD9 1497 aaPredicted RBP22.86■■□□□ 1.25
TRIM28-211ENST00000597968 ATP10BO94823 1461 aa22.81■■□□□ 1.24
TRIM28-211ENST00000597968 KCNH8Q96L42 1107 aa22.8■■□□□ 1.24
TRIM28-211ENST00000597968 PHLDB1Q86UU1 1377 aa22.79■■□□□ 1.24
TRIM28-211ENST00000597968 P3H3Q8IVL6 736 aa22.77■■□□□ 1.24
TRIM28-211ENST00000597968 RAPGEF6Q8TEU7 1601 aa22.75■■□□□ 1.23
TRIM28-211ENST00000597968 KIF21BO75037 1637 aa22.73■■□□□ 1.23
TRIM28-211ENST00000597968 ADGRL1O94910 1474 aa22.73■■□□□ 1.23
TRIM28-211ENST00000597968 ARAP3Q8WWN8 1544 aa22.72■■□□□ 1.23
TRIM28-211ENST00000597968 EFCAB5A4FU69 1503 aa22.71■■□□□ 1.23
TRIM28-211ENST00000597968 ABCA9Q8IUA7 1624 aa22.71■■□□□ 1.23
TRIM28-211ENST00000597968 NUP153P49790 1475 aaKnown RBP22.67■■□□□ 1.22
TRIM28-211ENST00000597968 NEO1Q92859 1461 aa22.66■■□□□ 1.22
TRIM28-211ENST00000597968 FHOD3Q2V2M9 1422 aa22.64■■□□□ 1.21
TRIM28-211ENST00000597968 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP22.63■■□□□ 1.21
TRIM28-211ENST00000597968 HNRNPUL2Q1KMD3 747 aaKnown RBP22.63■■□□□ 1.21
TRIM28-211ENST00000597968 ARID3CA6NKF2 412 aa22.62■■□□□ 1.21
TRIM28-211ENST00000597968 PLEKHD1A6NEE1 506 aa22.61■■□□□ 1.21
TRIM28-211ENST00000597968 RANGAP1P46060 587 aaPredicted RBP22.54■■□□□ 1.2
TRIM28-211ENST00000597968 CHIC1Q5VXU3 224 aa22.54■■□□□ 1.2
TRIM28-211ENST00000597968 FMN1Q68DA7 1419 aa22.53■■□□□ 1.2
TRIM28-211ENST00000597968 UBTFP17480 764 aaKnown RBP22.5■■□□□ 1.19
TRIM28-211ENST00000597968 CFAP74Q9C0B2 1584 aa22.48■■□□□ 1.19
TRIM28-211ENST00000597968 RAPGEF3O95398 923 aa22.46■■□□□ 1.19
TRIM28-211ENST00000597968 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP22.45■■□□□ 1.184e-16■■□□□ 13.7
TRIM28-211ENST00000597968 FANCAO15360 1455 aa22.44■■□□□ 1.18
TRIM28-211ENST00000597968 DENND4BO75064 1496 aaPredicted RBP22.44■■□□□ 1.18
TRIM28-211ENST00000597968 AKNAQ7Z591 1439 aa22.44■■□□□ 1.18
TRIM28-211ENST00000597968 CDK11AQ9UQ88 783 aaPredicted RBP22.44■■□□□ 1.18
TRIM28-211ENST00000597968 ARHGAP35Q9NRY4 1499 aa22.42■■□□□ 1.18
TRIM28-211ENST00000597968 HECW1Q76N89 1606 aa22.42■■□□□ 1.18
TRIM28-211ENST00000597968 FRMPD1Q5SYB0 1578 aa22.42■■□□□ 1.18
TRIM28-211ENST00000597968 PLCH2O75038 1416 aa22.39■■□□□ 1.17
TRIM28-211ENST00000597968 HECW2Q9P2P5 1572 aa22.38■■□□□ 1.17
TRIM28-211ENST00000597968 MAGI2Q86UL8 1455 aa22.38■■□□□ 1.17
TRIM28-211ENST00000597968 CDK13Q14004 1512 aaKnown RBP22.37■■□□□ 1.17
TRIM28-211ENST00000597968 TTC37Q6PGP7 1564 aa22.37■■□□□ 1.17
TRIM28-211ENST00000597968 ZMYM4Q5VZL5 1548 aa22.36■■□□□ 1.17
TRIM28-211ENST00000597968 ADAMTSL3P82987 1691 aa22.36■■□□□ 1.17
TRIM28-211ENST00000597968 RICTORQ6R327 1708 aa22.35■■□□□ 1.17
TRIM28-211ENST00000597968 ARHGEF40Q8TER5 1519 aa22.35■■□□□ 1.17
TRIM28-211ENST00000597968 PTPRMP28827 1452 aa22.32■■□□□ 1.16
TRIM28-211ENST00000597968 BCORL1Q5H9F3 1711 aa22.31■■□□□ 1.16
TRIM28-211ENST00000597968 EFCAB2Q5VUJ9 269 aa22.3■■□□□ 1.16
TRIM28-211ENST00000597968 ATP1B4Q9UN42 357 aaPredicted RBP22.3■■□□□ 1.16
TRIM28-211ENST00000597968 CLIP1P30622 1438 aa22.3■■□□□ 1.16
TRIM28-211ENST00000597968 TROQ12816 1431 aaPredicted RBP22.3■■□□□ 1.16
TRIM28-211ENST00000597968 POGZQ7Z3K3 1410 aa22.3■■□□□ 1.16
TRIM28-211ENST00000597968 ARID4BQ4LE39 1312 aaPredicted RBP22.3■■□□□ 1.16
TRIM28-211ENST00000597968 SCAPERQ9BY12 1400 aa22.27■■□□□ 1.16
TRIM28-211ENST00000597968 KIF14Q15058 1648 aa22.27■■□□□ 1.16
TRIM28-211ENST00000597968 ZFYVE16Q7Z3T8 1539 aa22.26■■□□□ 1.15
Retrieved 100 of 20,778 RNA–protein pairs in 12.3 ms