RNA–Protein interactions for RNA: ENST00000597325.1

SHKBP1-213, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 5

Gene SHKBP1, Length 366 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-213ENST00000597325 ADAMTS12P58397 1594 aa21■□□□□ 0.95
SHKBP1-213ENST00000597325 ADGRL1O94910 1474 aa20.96■□□□□ 0.95
SHKBP1-213ENST00000597325 PRG4Q92954 1404 aaPredicted RBP20.95■□□□□ 0.95
SHKBP1-213ENST00000597325 TSPOAP1O95153 1857 aa20.92■□□□□ 0.94
SHKBP1-213ENST00000597325 ADCY10Q96PN6 1610 aa20.9■□□□□ 0.94
SHKBP1-213ENST00000597325 NPM1P06748 294 aaKnown RBP eCLIP20.89■□□□□ 0.93
SHKBP1-213ENST00000597325 FBXO41Q8TF61 875 aa20.89■□□□□ 0.93
SHKBP1-213ENST00000597325 FHAD1B1AJZ9 1412 aa20.87■□□□□ 0.93
SHKBP1-213ENST00000597325 JPH4Q96JJ6 628 aa20.86■□□□□ 0.93
SHKBP1-213ENST00000597325 PPRC1Q5VV67 1664 aaKnown RBP20.77■□□□□ 0.91
SHKBP1-213ENST00000597325 ERICH3Q5RHP9 1530 aa20.74■□□□□ 0.91
SHKBP1-213ENST00000597325 RUSC2Q8N2Y8 1516 aa20.73■□□□□ 0.91
SHKBP1-213ENST00000597325 WRNQ14191 1432 aaPredicted RBP eCLIP20.71■□□□□ 0.91
SHKBP1-213ENST00000597325 COL17A1Q9UMD9 1497 aaPredicted RBP20.71■□□□□ 0.91
SHKBP1-213ENST00000597325 GLI2P10070 1586 aa20.65■□□□□ 0.9
SHKBP1-213ENST00000597325 LMTK3Q96Q04 1460 aa20.62■□□□□ 0.89
SHKBP1-213ENST00000597325 ASXL2Q76L83 1435 aa20.56■□□□□ 0.88
SHKBP1-213ENST00000597325 BIVM-ERCC5R4GMW8 1640 aa20.56■□□□□ 0.88
SHKBP1-213ENST00000597325 TOP2BQ02880 1626 aa20.55■□□□□ 0.88
SHKBP1-213ENST00000597325 PLB1Q6P1J6 1458 aa20.55■□□□□ 0.88
SHKBP1-213ENST00000597325 ABCC2Q92887 1545 aa20.54■□□□□ 0.88
SHKBP1-213ENST00000597325 KIAA0586Q9BVV6 1533 aa20.51■□□□□ 0.87
SHKBP1-213ENST00000597325 MAP3K4Q9Y6R4 1608 aa20.5■□□□□ 0.87
SHKBP1-213ENST00000597325 PTPRGP23470 1445 aa20.48■□□□□ 0.87
SHKBP1-213ENST00000597325 SOCS7O14512 581 aa20.47■□□□□ 0.87
SHKBP1-213ENST00000597325 TEX14Q8IWB6 1497 aa20.45■□□□□ 0.86
SHKBP1-213ENST00000597325 EPRSP07814 1512 aaKnown RBP20.45■□□□□ 0.86
SHKBP1-213ENST00000597325 ILDR2Q71H61 639 aa20.45■□□□□ 0.86
SHKBP1-213ENST00000597325 CUL7Q14999 1698 aa20.44■□□□□ 0.86
SHKBP1-213ENST00000597325 UHRF1BP1LA0JNW5 1464 aa20.41■□□□□ 0.86
SHKBP1-213ENST00000597325 TNIKQ9UKE5 1360 aa20.36■□□□□ 0.85
SHKBP1-213ENST00000597325 KDM5BQ9UGL1 1544 aa20.33■□□□□ 0.85
SHKBP1-213ENST00000597325 TTBK1Q5TCY1 1321 aaPredicted RBP20.32■□□□□ 0.84
SHKBP1-213ENST00000597325 KIF21BO75037 1637 aa20.32■□□□□ 0.84
SHKBP1-213ENST00000597325 PTPRMP28827 1452 aa20.3■□□□□ 0.84
SHKBP1-213ENST00000597325 UACAQ9BZF9 1416 aa20.3■□□□□ 0.84
SHKBP1-213ENST00000597325 DISP3Q9P2K9 1392 aa20.28■□□□□ 0.84
SHKBP1-213ENST00000597325 CARMIL2Q6F5E8 1435 aa20.27■□□□□ 0.84
SHKBP1-213ENST00000597325 PCF11O94913 1555 aaKnown RBP20.27■□□□□ 0.84
SHKBP1-213ENST00000597325 CHIC1Q5VXU3 224 aa20.27■□□□□ 0.84
SHKBP1-213ENST00000597325 ADAMTSL3P82987 1691 aa20.26■□□□□ 0.83
SHKBP1-213ENST00000597325 IGF1RP08069 1367 aa20.25■□□□□ 0.83
SHKBP1-213ENST00000597325 ZCCHC11Q5TAX3 1644 aaKnown RBP20.25■□□□□ 0.83
SHKBP1-213ENST00000597325 MAGI3Q5TCQ9 1506 aa20.23■□□□□ 0.83
SHKBP1-213ENST00000597325 WDR7Q9Y4E6 1490 aa20.19■□□□□ 0.82
SHKBP1-213ENST00000597325 DISP1Q96F81 1524 aa20.18■□□□□ 0.82
SHKBP1-213ENST00000597325 CERKQ8TCT0 537 aa20.18■□□□□ 0.82
SHKBP1-213ENST00000597325 CD109Q6YHK3 1445 aa20.17■□□□□ 0.82
SHKBP1-213ENST00000597325 CFAP43Q8NDM7 1665 aa20.16■□□□□ 0.82
SHKBP1-213ENST00000597325 IQGAP2Q13576 1575 aa20.15■□□□□ 0.82
SHKBP1-213ENST00000597325 ARAP3Q8WWN8 1544 aa20.12■□□□□ 0.81
SHKBP1-213ENST00000597325 BCORL1Q5H9F3 1711 aa20.09■□□□□ 0.81
SHKBP1-213ENST00000597325 MADDQ8WXG6 1647 aa20.09■□□□□ 0.81
SHKBP1-213ENST00000597325 SPATA31D1Q6ZQQ2 1576 aa20.08■□□□□ 0.8
SHKBP1-213ENST00000597325 KIF27Q86VH2 1401 aa20.06■□□□□ 0.8
SHKBP1-213ENST00000597325 CARMIL1Q5VZK9 1371 aa20.06■□□□□ 0.8
SHKBP1-213ENST00000597325 HSPA2P54652 639 aa20.05■□□□□ 0.8
SHKBP1-213ENST00000597325 UGGT2Q9NYU1 1516 aa20.02■□□□□ 0.8
SHKBP1-213ENST00000597325 KCNH8Q96L42 1107 aa20■□□□□ 0.79
SHKBP1-213ENST00000597325 KIAA0556O60303 1618 aa20■□□□□ 0.79
SHKBP1-213ENST00000597325 RIMS1Q86UR5 1692 aaKnown RBP19.96■□□□□ 0.79
SHKBP1-213ENST00000597325 PHLDB1Q86UU1 1377 aa19.93■□□□□ 0.78
SHKBP1-213ENST00000597325 RAPGEF3O95398 923 aa19.92■□□□□ 0.78
SHKBP1-213ENST00000597325 FRMPD1Q5SYB0 1578 aa19.91■□□□□ 0.78
SHKBP1-213ENST00000597325 ABCA8O94911 1581 aa19.9■□□□□ 0.78
SHKBP1-213ENST00000597325 EEA1Q15075 1411 aa19.89■□□□□ 0.77
SHKBP1-213ENST00000597325 ARID4BQ4LE39 1312 aaPredicted RBP19.89■□□□□ 0.77
SHKBP1-213ENST00000597325 ABCA9Q8IUA7 1624 aa19.84■□□□□ 0.77
SHKBP1-213ENST00000597325 NEO1Q92859 1461 aa19.83■□□□□ 0.76
SHKBP1-213ENST00000597325 ARHGEF40Q8TER5 1519 aa19.82■□□□□ 0.76
SHKBP1-213ENST00000597325 FAM9AQ8IZU1 332 aaPredicted RBP19.8■□□□□ 0.76
SHKBP1-213ENST00000597325 YEATS2Q9ULM3 1422 aa19.78■□□□□ 0.76
SHKBP1-213ENST00000597325 STRCQ7RTU9 1775 aa19.78■□□□□ 0.76
SHKBP1-213ENST00000597325 SIGLEC1Q9BZZ2 1709 aa19.76■□□□□ 0.75
SHKBP1-213ENST00000597325 PLPPR3Q6T4P5 718 aa19.76■□□□□ 0.75
SHKBP1-213ENST00000597325 RAPGEF2Q9Y4G8 1499 aa19.75■□□□□ 0.75
SHKBP1-213ENST00000597325 TTC37Q6PGP7 1564 aa19.74■□□□□ 0.75
SHKBP1-213ENST00000597325 ATP10BO94823 1461 aa19.73■□□□□ 0.75
SHKBP1-213ENST00000597325 RICTORQ6R327 1708 aa19.72■□□□□ 0.75
SHKBP1-213ENST00000597325 DMRT2Q9Y5R5 561 aa19.72■□□□□ 0.75
SHKBP1-213ENST00000597325 FANCAO15360 1455 aa19.72■□□□□ 0.75
SHKBP1-213ENST00000597325 PREX1Q8TCU6 1659 aa19.71■□□□□ 0.75
SHKBP1-213ENST00000597325 POGZQ7Z3K3 1410 aa19.71■□□□□ 0.75
SHKBP1-213ENST00000597325 CSRNP3Q8WYN3 585 aa19.71■□□□□ 0.75
SHKBP1-213ENST00000597325 GOLGA3Q08378 1498 aa19.7■□□□□ 0.74
SHKBP1-213ENST00000597325 FER1L4A9Z1Z3 1794 aa19.69■□□□□ 0.74
SHKBP1-213ENST00000597325 LTBP4Q8N2S1 1624 aa19.68■□□□□ 0.74
SHKBP1-213ENST00000597325 FHOD3Q2V2M9 1422 aa19.68■□□□□ 0.74
SHKBP1-213ENST00000597325 IQSEC2Q5JU85 1478 aa19.67■□□□□ 0.74
SHKBP1-213ENST00000597325 AKNAQ7Z591 1439 aa19.66■□□□□ 0.74
SHKBP1-213ENST00000597325 DENND4BO75064 1496 aaPredicted RBP19.65■□□□□ 0.74
SHKBP1-213ENST00000597325 CTTNBP2Q8WZ74 1663 aa19.65■□□□□ 0.74
SHKBP1-213ENST00000597325 PTPRTO14522 1441 aa19.64■□□□□ 0.73
SHKBP1-213ENST00000597325 ZMYM4Q5VZL5 1548 aa19.64■□□□□ 0.73
SHKBP1-213ENST00000597325 ARID3CA6NKF2 412 aa19.63■□□□□ 0.73
SHKBP1-213ENST00000597325 PRXQ9BXM0 1461 aa19.62■□□□□ 0.73
SHKBP1-213ENST00000597325 ARHGEF12Q9NZN5 1544 aa19.61■□□□□ 0.73
SHKBP1-213ENST00000597325 MLECQ14165 292 aa19.59■□□□□ 0.73
SHKBP1-213ENST00000597325 ZFYVE16Q7Z3T8 1539 aa19.59■□□□□ 0.73
SHKBP1-213ENST00000597325 EFCAB5A4FU69 1503 aa19.58■□□□□ 0.73
Retrieved 100 of 20,778 RNA–protein pairs in 17.8 ms