RNA–Protein interactions for RNA: ENST00000595028.1

TRIM28-205, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 486 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-205ENST00000595028 RUSC2Q8N2Y8 1516 aa25.95■■□□□ 1.74
TRIM28-205ENST00000595028 KIF13AQ9H1H9 1805 aa25.94■■□□□ 1.74
TRIM28-205ENST00000595028 CARMIL1Q5VZK9 1371 aa25.82■■□□□ 1.72
TRIM28-205ENST00000595028 KIAA0586Q9BVV6 1533 aa25.78■■□□□ 1.72
TRIM28-205ENST00000595028 PRG4Q92954 1404 aaPredicted RBP25.76■■□□□ 1.71
TRIM28-205ENST00000595028 JPH4Q96JJ6 628 aa25.72■■□□□ 1.71
TRIM28-205ENST00000595028 ILDR1Q86SU0 546 aaPredicted RBP25.71■■□□□ 1.71
TRIM28-205ENST00000595028 RAPGEF2Q9Y4G8 1499 aa25.68■■□□□ 1.7
TRIM28-205ENST00000595028 KDM4FA0A1W2PPD8 638 aa25.68■■□□□ 1.7
TRIM28-205ENST00000595028 FAM69CQ0P6D2 419 aa25.68■■□□□ 1.7
TRIM28-205ENST00000595028 ABCC10Q5T3U5 1492 aa25.67■■□□□ 1.7
TRIM28-205ENST00000595028 IQGAP2Q13576 1575 aa25.65■■□□□ 1.7
TRIM28-205ENST00000595028 DIP2BQ9P265 1576 aa25.6■■□□□ 1.69
TRIM28-205ENST00000595028 MAPKBP1O60336 1514 aa25.58■■□□□ 1.69
TRIM28-205ENST00000595028 KDM6BO15054 1643 aa25.58■■□□□ 1.69
TRIM28-205ENST00000595028 PRXQ9BXM0 1461 aa25.56■■□□□ 1.68
TRIM28-205ENST00000595028 CTTNBP2Q8WZ74 1663 aa25.55■■□□□ 1.68
TRIM28-205ENST00000595028 NPM1P06748 294 aaKnown RBP eCLIP25.55■■□□□ 1.68
TRIM28-205ENST00000595028 ADCY10Q96PN6 1610 aa25.5■■□□□ 1.67
TRIM28-205ENST00000595028 UGGT2Q9NYU1 1516 aa25.49■■□□□ 1.67
TRIM28-205ENST00000595028 CARMIL2Q6F5E8 1435 aa25.49■■□□□ 1.67
TRIM28-205ENST00000595028 TSPOAP1O95153 1857 aa25.49■■□□□ 1.67
TRIM28-205ENST00000595028 EEA1Q15075 1411 aa25.46■■□□□ 1.67
TRIM28-205ENST00000595028 DISP1Q96F81 1524 aa25.46■■□□□ 1.67
TRIM28-205ENST00000595028 KIAA0556O60303 1618 aa25.43■■□□□ 1.66
TRIM28-205ENST00000595028 TNIKQ9UKE5 1360 aa25.42■■□□□ 1.66
TRIM28-205ENST00000595028 PTPRGP23470 1445 aa25.4■■□□□ 1.66
TRIM28-205ENST00000595028 CSRNP3Q8WYN3 585 aa25.38■■□□□ 1.65
TRIM28-205ENST00000595028 CHIC1Q5VXU3 224 aa25.35■■□□□ 1.65
TRIM28-205ENST00000595028 GOLGA3Q08378 1498 aa25.3■■□□□ 1.64
TRIM28-205ENST00000595028 TTBK1Q5TCY1 1321 aaPredicted RBP25.29■■□□□ 1.64
TRIM28-205ENST00000595028 UHRF1BP1LA0JNW5 1464 aa25.28■■□□□ 1.64
TRIM28-205ENST00000595028 ADGRL1O94910 1474 aa25.28■■□□□ 1.64
TRIM28-205ENST00000595028 KIF21BO75037 1637 aa25.28■■□□□ 1.64
TRIM28-205ENST00000595028 ABCC2Q92887 1545 aa25.27■■□□□ 1.64
TRIM28-205ENST00000595028 UACAQ9BZF9 1416 aa25.26■■□□□ 1.63
TRIM28-205ENST00000595028 FAM9AQ8IZU1 332 aaPredicted RBP25.23■■□□□ 1.63
TRIM28-205ENST00000595028 PPRC1Q5VV67 1664 aaKnown RBP25.21■■□□□ 1.63
TRIM28-205ENST00000595028 HECW2Q9P2P5 1572 aa25.2■■□□□ 1.62
TRIM28-205ENST00000595028 SAMD9Q5K651 1589 aa25.19■■□□□ 1.62
TRIM28-205ENST00000595028 KDM5BQ9UGL1 1544 aa25.17■■□□□ 1.62
TRIM28-205ENST00000595028 ABCA8O94911 1581 aa25.14■■□□□ 1.62
TRIM28-205ENST00000595028 ZCCHC11Q5TAX3 1644 aaKnown RBP25.14■■□□□ 1.61
TRIM28-205ENST00000595028 PLB1Q6P1J6 1458 aa25.14■■□□□ 1.61
TRIM28-205ENST00000595028 GLI2P10070 1586 aa25.14■■□□□ 1.61
TRIM28-205ENST00000595028 ASXL2Q76L83 1435 aa25.12■■□□□ 1.61
TRIM28-205ENST00000595028 COL17A1Q9UMD9 1497 aaPredicted RBP25.09■■□□□ 1.61
TRIM28-205ENST00000595028 EFCAB5A4FU69 1503 aa25.02■■□□□ 1.6
TRIM28-205ENST00000595028 P3H3Q8IVL6 736 aa25.01■■□□□ 1.59
TRIM28-205ENST00000595028 MAP3K4Q9Y6R4 1608 aa24.99■■□□□ 1.59
TRIM28-205ENST00000595028 RAPGEF6Q8TEU7 1601 aa24.97■■□□□ 1.59
TRIM28-205ENST00000595028 EPRSP07814 1512 aaKnown RBP24.97■■□□□ 1.59
TRIM28-205ENST00000595028 WDR7Q9Y4E6 1490 aa24.97■■□□□ 1.59
TRIM28-205ENST00000595028 FHOD3Q2V2M9 1422 aa24.97■■□□□ 1.59
TRIM28-205ENST00000595028 TEX14Q8IWB6 1497 aa24.95■■□□□ 1.58
TRIM28-205ENST00000595028 RANGAP1P46060 587 aaPredicted RBP24.93■■□□□ 1.58
TRIM28-205ENST00000595028 EHMT2Q96KQ7 1210 aa24.91■■□□□ 1.58
TRIM28-205ENST00000595028 UBTFP17480 764 aaKnown RBP24.9■■□□□ 1.58
TRIM28-205ENST00000595028 FBXO41Q8TF61 875 aa24.89■■□□□ 1.58
TRIM28-205ENST00000595028 ATP10BO94823 1461 aa24.87■■□□□ 1.57
TRIM28-205ENST00000595028 NUP153P49790 1475 aaKnown RBP24.86■■□□□ 1.57
TRIM28-205ENST00000595028 CFAP43Q8NDM7 1665 aa24.83■■□□□ 1.57
TRIM28-205ENST00000595028 ARHGAP35Q9NRY4 1499 aa24.83■■□□□ 1.56
TRIM28-205ENST00000595028 ARID3CA6NKF2 412 aa24.81■■□□□ 1.56
TRIM28-205ENST00000595028 FMN1Q68DA7 1419 aa24.74■■□□□ 1.55
TRIM28-205ENST00000595028 MAGI3Q5TCQ9 1506 aa24.72■■□□□ 1.55
TRIM28-205ENST00000595028 KCNH8Q96L42 1107 aa24.72■■□□□ 1.55
TRIM28-205ENST00000595028 HECW1Q76N89 1606 aa24.72■■□□□ 1.55
TRIM28-205ENST00000595028 ABCA9Q8IUA7 1624 aa24.72■■□□□ 1.55
TRIM28-205ENST00000595028 CD109Q6YHK3 1445 aa24.71■■□□□ 1.55
TRIM28-205ENST00000595028 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP24.67■■□□□ 1.54
TRIM28-205ENST00000595028 HNRNPUL2Q1KMD3 747 aaKnown RBP24.67■■□□□ 1.54
TRIM28-205ENST00000595028 CDK13Q14004 1512 aaKnown RBP24.66■■□□□ 1.54
TRIM28-205ENST00000595028 PCF11O94913 1555 aaKnown RBP24.59■■□□□ 1.53
TRIM28-205ENST00000595028 LRRIQ1Q96JM4 1722 aa24.59■■□□□ 1.53
TRIM28-205ENST00000595028 CLIP1P30622 1438 aa24.59■■□□□ 1.53
TRIM28-205ENST00000595028 PTPRMP28827 1452 aa24.58■■□□□ 1.52
TRIM28-205ENST00000595028 PLEKHD1A6NEE1 506 aa24.56■■□□□ 1.52
TRIM28-205ENST00000595028 ADAMTSL3P82987 1691 aa24.55■■□□□ 1.52
TRIM28-205ENST00000595028 TTC37Q6PGP7 1564 aa24.54■■□□□ 1.52
TRIM28-205ENST00000595028 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP24.54■■□□□ 1.52
TRIM28-205ENST00000595028 CASKIN1Q8WXD9 1431 aa24.53■■□□□ 1.52
TRIM28-205ENST00000595028 ARAP3Q8WWN8 1544 aa24.52■■□□□ 1.52
TRIM28-205ENST00000595028 ATP1B4Q9UN42 357 aaPredicted RBP24.51■■□□□ 1.51
TRIM28-205ENST00000595028 NEO1Q92859 1461 aa24.51■■□□□ 1.51
TRIM28-205ENST00000595028 CCDC18Q5T9S5 1454 aa24.49■■□□□ 1.51
TRIM28-205ENST00000595028 FYCO1Q9BQS8 1478 aa24.49■■□□□ 1.51
TRIM28-205ENST00000595028 LMTK3Q96Q04 1460 aa24.47■■□□□ 1.51
TRIM28-205ENST00000595028 PHLDB1Q86UU1 1377 aa24.47■■□□□ 1.51
TRIM28-205ENST00000595028 CFAP74Q9C0B2 1584 aa24.46■■□□□ 1.51
TRIM28-205ENST00000595028 KIF14Q15058 1648 aa24.46■■□□□ 1.51
TRIM28-205ENST00000595028 TROQ12816 1431 aaPredicted RBP24.44■■□□□ 1.5
TRIM28-205ENST00000595028 CEP162Q5TB80 1403 aa24.44■■□□□ 1.5
TRIM28-205ENST00000595028 CDK11AQ9UQ88 783 aaPredicted RBP24.43■■□□□ 1.5
TRIM28-205ENST00000595028 BCORL1Q5H9F3 1711 aa24.41■■□□□ 1.5
TRIM28-205ENST00000595028 MYO5CQ9NQX4 1742 aa24.41■■□□□ 1.5
TRIM28-205ENST00000595028 MADDQ8WXG6 1647 aa24.41■■□□□ 1.5
TRIM28-205ENST00000595028 FANCAO15360 1455 aa24.4■■□□□ 1.5
TRIM28-205ENST00000595028 FRMPD1Q5SYB0 1578 aa24.4■■□□□ 1.5
TRIM28-205ENST00000595028 RAPGEF3O95398 923 aa24.37■■□□□ 1.49
Retrieved 100 of 20,778 RNA–protein pairs in 15.1 ms