RNA–Protein interactions for RNA: ENST00000591239.1

DNMT1-223, Transcript of DNA methyltransferase 1, humanhuman

TSL 2

Gene DNMT1, Length 550 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DNMT1-223ENST00000591239 RUSC2Q8N2Y8 1516 aa15.58■□□□□ 0.09
DNMT1-223ENST00000591239 SHROOM2Q13796 1616 aa15.54■□□□□ 0.08
DNMT1-223ENST00000591239 JPH4Q96JJ6 628 aa15.54■□□□□ 0.08
DNMT1-223ENST00000591239 ERCC6L2Q5T890 1561 aa15.53■□□□□ 0.08
DNMT1-223ENST00000591239 KIAA0586Q9BVV6 1533 aa15.52■□□□□ 0.07
DNMT1-223ENST00000591239 PRG4Q92954 1404 aaPredicted RBP15.5■□□□□ 0.07
DNMT1-223ENST00000591239 RAPGEF2Q9Y4G8 1499 aa15.49■□□□□ 0.07
DNMT1-223ENST00000591239 PRXQ9BXM0 1461 aa15.42■□□□□ 0.06
DNMT1-223ENST00000591239 CSRNP3Q8WYN3 585 aa15.41■□□□□ 0.06
DNMT1-223ENST00000591239 IQGAP2Q13576 1575 aa15.41■□□□□ 0.06
DNMT1-223ENST00000591239 EEA1Q15075 1411 aa15.39■□□□□ 0.05
DNMT1-223ENST00000591239 FAM9AQ8IZU1 332 aaPredicted RBP15.36■□□□□ 0.05
DNMT1-223ENST00000591239 CARMIL2Q6F5E8 1435 aa15.35■□□□□ 0.05
DNMT1-223ENST00000591239 TRHP20396 242 aaPredicted RBP15.34■□□□□ 0.05
DNMT1-223ENST00000591239 UGGT2Q9NYU1 1516 aa15.33■□□□□ 0.04
DNMT1-223ENST00000591239 TNIKQ9UKE5 1360 aa15.31■□□□□ 0.04
DNMT1-223ENST00000591239 PTPRGP23470 1445 aa15.31■□□□□ 0.04
DNMT1-223ENST00000591239 DISP1Q96F81 1524 aa15.31■□□□□ 0.04
DNMT1-223ENST00000591239 CTTNBP2Q8WZ74 1663 aa15.31■□□□□ 0.04
DNMT1-223ENST00000591239 TTBK1Q5TCY1 1321 aaPredicted RBP15.3■□□□□ 0.04
DNMT1-223ENST00000591239 NPM1P06748 294 aaKnown RBP eCLIP15.26■□□□□ 0.03
DNMT1-223ENST00000591239 ADCY10Q96PN6 1610 aa15.25■□□□□ 0.03
DNMT1-223ENST00000591239 KIAA0556O60303 1618 aa15.25■□□□□ 0.03
DNMT1-223ENST00000591239 GOLGA3Q08378 1498 aa15.23■□□□□ 0.03
DNMT1-223ENST00000591239 KIF21BO75037 1637 aa15.22■□□□□ 0.03
DNMT1-223ENST00000591239 UACAQ9BZF9 1416 aa15.19■□□□□ 0.02
DNMT1-223ENST00000591239 UHRF1BP1LA0JNW5 1464 aa15.18■□□□□ 0.02
DNMT1-223ENST00000591239 EHMT2Q96KQ7 1210 aa15.17■□□□□ 0.02
DNMT1-223ENST00000591239 MAPKBP1O60336 1514 aa15.17■□□□□ 0.02
DNMT1-223ENST00000591239 ABCC2Q92887 1545 aa15.17■□□□□ 0.02
DNMT1-223ENST00000591239 P3H3Q8IVL6 736 aa15.16■□□□□ 0.02
DNMT1-223ENST00000591239 UBTFP17480 764 aaKnown RBP15.15■□□□□ 0.02
DNMT1-223ENST00000591239 RANGAP1P46060 587 aaPredicted RBP15.14■□□□□ 0.01
DNMT1-223ENST00000591239 PLB1Q6P1J6 1458 aa15.14■□□□□ 0.01
DNMT1-223ENST00000591239 SAMD9Q5K651 1589 aa15.12■□□□□ 0.01
DNMT1-223ENST00000591239 FAM69CQ0P6D2 419 aa15.12■□□□□ 0.01
DNMT1-223ENST00000591239 ABCC10Q5T3U5 1492 aa15.12■□□□□ 0.01
DNMT1-223ENST00000591239 KDM5BQ9UGL1 1544 aa15.11■□□□□ 0.01
DNMT1-223ENST00000591239 KIF13AQ9H1H9 1805 aa15.1■□□□□ 0.01
DNMT1-223ENST00000591239 ABCA8O94911 1581 aa15.09■□□□□ 0.01
DNMT1-223ENST00000591239 ASXL2Q76L83 1435 aa15.09■□□□□ 0.01
DNMT1-223ENST00000591239 DIP2BQ9P265 1576 aa15.07■□□□□ 0
DNMT1-223ENST00000591239 SENP3Q9H4L4 574 aaPredicted RBP15.07■□□□□ 0
DNMT1-223ENST00000591239 ZCCHC11Q5TAX3 1644 aaKnown RBP15.06■□□□□ 0
DNMT1-223ENST00000591239 FHOD3Q2V2M9 1422 aa15.06■□□□□ 0
DNMT1-223ENST00000591239 EFCAB5A4FU69 1503 aa15.05■□□□□ -0
DNMT1-223ENST00000591239 ARID3CA6NKF2 412 aa15□□□□□ -0.01
DNMT1-223ENST00000591239 ATP10BO94823 1461 aa15□□□□□ -0.01
DNMT1-223ENST00000591239 WDR7Q9Y4E6 1490 aa15□□□□□ -0.01
DNMT1-223ENST00000591239 RAPGEF6Q8TEU7 1601 aa14.99□□□□□ -0.01
DNMT1-223ENST00000591239 EPRSP07814 1512 aaKnown RBP14.99□□□□□ -0.01
DNMT1-223ENST00000591239 GLI2P10070 1586 aa14.98□□□□□ -0.01
DNMT1-223ENST00000591239 ARHGAP35Q9NRY4 1499 aa14.98□□□□□ -0.01
DNMT1-223ENST00000591239 NUP153P49790 1475 aaKnown RBP14.95□□□□□ -0.02
DNMT1-223ENST00000591239 TSPOAP1O95153 1857 aa14.95□□□□□ -0.02
DNMT1-223ENST00000591239 KCNH8Q96L42 1107 aa14.95□□□□□ -0.02
DNMT1-223ENST00000591239 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP14.94□□□□□ -0.02
DNMT1-223ENST00000591239 HNRNPUL2Q1KMD3 747 aaKnown RBP14.94□□□□□ -0.02
DNMT1-223ENST00000591239 FMN1Q68DA7 1419 aa14.93□□□□□ -0.02
DNMT1-223ENST00000591239 MAP3K4Q9Y6R4 1608 aa14.91□□□□□ -0.02
DNMT1-223ENST00000591239 ATP1B4Q9UN42 357 aaPredicted RBP14.89□□□□□ -0.03
DNMT1-223ENST00000591239 PPRC1Q5VV67 1664 aaKnown RBP14.89□□□□□ -0.03
DNMT1-223ENST00000591239 CLIP1P30622 1438 aa14.88□□□□□ -0.03
DNMT1-223ENST00000591239 CD109Q6YHK3 1445 aa14.87□□□□□ -0.03
DNMT1-223ENST00000591239 PLEKHD1A6NEE1 506 aa14.87□□□□□ -0.03
DNMT1-223ENST00000591239 TEX14Q8IWB6 1497 aa14.86□□□□□ -0.03
DNMT1-223ENST00000591239 KDM6BO15054 1643 aa14.85□□□□□ -0.03
DNMT1-223ENST00000591239 CFAP43Q8NDM7 1665 aa14.85□□□□□ -0.03
DNMT1-223ENST00000591239 CDK13Q14004 1512 aaKnown RBP14.85□□□□□ -0.03
DNMT1-223ENST00000591239 HECW1Q76N89 1606 aa14.84□□□□□ -0.03
DNMT1-223ENST00000591239 LOC105371045A0A1W2PR82 267 aa14.84□□□□□ -0.03
DNMT1-223ENST00000591239 MAGI3Q5TCQ9 1506 aa14.83□□□□□ -0.04
DNMT1-223ENST00000591239 ABCA9Q8IUA7 1624 aa14.81□□□□□ -0.04
DNMT1-223ENST00000591239 CASKIN1Q8WXD9 1431 aa14.81□□□□□ -0.04
DNMT1-223ENST00000591239 CDK11AQ9UQ88 783 aaPredicted RBP14.8□□□□□ -0.04
DNMT1-223ENST00000591239 CEP162Q5TB80 1403 aa14.79□□□□□ -0.04
DNMT1-223ENST00000591239 COL17A1Q9UMD9 1497 aaPredicted RBP14.79□□□□□ -0.04
DNMT1-223ENST00000591239 PCF11O94913 1555 aaKnown RBP14.78□□□□□ -0.04
DNMT1-223ENST00000591239 FYCO1Q9BQS8 1478 aa14.76□□□□□ -0.05
DNMT1-223ENST00000591239 LRRIQ1Q96JM4 1722 aa14.76□□□□□ -0.05
DNMT1-223ENST00000591239 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP14.75□□□□□ -0.05
DNMT1-223ENST00000591239 CCDC18Q5T9S5 1454 aa14.75□□□□□ -0.05
DNMT1-223ENST00000591239 PLPPR3Q6T4P5 718 aa14.73□□□□□ -0.05
DNMT1-223ENST00000591239 TROQ12816 1431 aaPredicted RBP14.73□□□□□ -0.05
DNMT1-223ENST00000591239 PHLDB1Q86UU1 1377 aa14.73□□□□□ -0.05
DNMT1-223ENST00000591239 TTC37Q6PGP7 1564 aa14.72□□□□□ -0.05
DNMT1-223ENST00000591239 ARAP3Q8WWN8 1544 aa14.71□□□□□ -0.05
DNMT1-223ENST00000591239 NEO1Q92859 1461 aa14.71□□□□□ -0.05
DNMT1-223ENST00000591239 FANCAO15360 1455 aa14.69□□□□□ -0.06
DNMT1-223ENST00000591239 KIF14Q15058 1648 aa14.68□□□□□ -0.06
DNMT1-223ENST00000591239 PLCH2O75038 1416 aa14.67□□□□□ -0.06
DNMT1-223ENST00000591239 RAPGEF3O95398 923 aa14.66□□□□□ -0.06
DNMT1-223ENST00000591239 AKNAQ7Z591 1439 aa14.66□□□□□ -0.06
DNMT1-223ENST00000591239 CFAP74Q9C0B2 1584 aa14.64□□□□□ -0.07
DNMT1-223ENST00000591239 EFCAB2Q5VUJ9 269 aa14.63□□□□□ -0.07
DNMT1-223ENST00000591239 MYO5CQ9NQX4 1742 aa14.63□□□□□ -0.07
DNMT1-223ENST00000591239 DENND4BO75064 1496 aaPredicted RBP14.62□□□□□ -0.07
DNMT1-223ENST00000591239 MTUS2Q5JR59 1369 aa14.61□□□□□ -0.07
DNMT1-223ENST00000591239 VPS8Q8N3P4 1428 aa14.61□□□□□ -0.07
DNMT1-223ENST00000591239 ARHGAP5Q13017 1502 aa14.6□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms