RNA–Protein interactions for RNA: ENST00000589941.1

SMAD4-209, Transcript of SMAD family member 4, humanhuman

TSL 3

Gene SMAD4, Length 582 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD4-209ENST00000589941 KIF21AQ7Z4S6 1674 aa16.4■□□□□ 0.22
SMAD4-209ENST00000589941 PRKAR2AP13861 404 aaKnown RBP16.37■□□□□ 0.21
SMAD4-209ENST00000589941 SMARCA2P51531 1590 aa16.36■□□□□ 0.21
SMAD4-209ENST00000589941 IFNLR1Q8IU57 520 aaPredicted RBP16.34■□□□□ 0.21
SMAD4-209ENST00000589941 NCAPD3P42695 1498 aa16.34■□□□□ 0.21
SMAD4-209ENST00000589941 MNX1P50219 401 aaPredicted RBP16.29■□□□□ 0.2
SMAD4-209ENST00000589941 HMGXB3Q12766 1538 aa16.26■□□□□ 0.19
SMAD4-209ENST00000589941 PLEKHG5O94827 1062 aa16.25■□□□□ 0.19
SMAD4-209ENST00000589941 BAZ1AQ9NRL2 1556 aaPredicted RBP16.25■□□□□ 0.19
SMAD4-209ENST00000589941 ATAD2BQ9ULI0 1458 aa16.24■□□□□ 0.19
SMAD4-209ENST00000589941 FARP1Q9Y4F1 1045 aaPredicted RBP16.22■□□□□ 0.19
SMAD4-209ENST00000589941 KLHL34Q8N239 644 aa16.21■□□□□ 0.19
SMAD4-209ENST00000589941 LAMC3Q9Y6N6 1575 aa16.18■□□□□ 0.18
SMAD4-209ENST00000589941 SMARCA4P51532 1647 aa16.16■□□□□ 0.18
SMAD4-209ENST00000589941 ZBTB47Q9UFB7 747 aaPredicted RBP16.14■□□□□ 0.17
SMAD4-209ENST00000589941 POTEHQ6S545 545 aa16.13■□□□□ 0.17
SMAD4-209ENST00000589941 RIMBP3CA6NJZ7 1639 aa16.08■□□□□ 0.17
SMAD4-209ENST00000589941 RIMBP3BA6NNM3 1639 aa16.08■□□□□ 0.17
SMAD4-209ENST00000589941 RIMBP3Q9UFD9 1639 aa16.08■□□□□ 0.17
SMAD4-209ENST00000589941 SPOCK2Q92563 424 aa16.08■□□□□ 0.16
SMAD4-209ENST00000589941 NPM1P06748 294 aaKnown RBP eCLIP16.07■□□□□ 0.16
SMAD4-209ENST00000589941 NUBP1P53384 320 aa16.07■□□□□ 0.16
SMAD4-209ENST00000589941 WDR62O43379 1518 aa16.05■□□□□ 0.16
SMAD4-209ENST00000589941 BAZ1BQ9UIG0 1483 aaKnown RBP16.04■□□□□ 0.16
SMAD4-209ENST00000589941 RASEFQ8IZ41 740 aa16.01■□□□□ 0.15
SMAD4-209ENST00000589941 MRC2Q9UBG0 1479 aa16■□□□□ 0.15
SMAD4-209ENST00000589941 PDS5BQ9NTI5 1447 aa15.96■□□□□ 0.15
SMAD4-209ENST00000589941 PEG3Q9GZU2 1588 aa15.95■□□□□ 0.14
SMAD4-209ENST00000589941 C19orf67A6NJJ6 358 aa15.92■□□□□ 0.14
SMAD4-209ENST00000589941 CD44P16070 742 aaKnown RBP15.9■□□□□ 0.14
SMAD4-209ENST00000589941 TSPYL2Q9H2G4 693 aaPredicted RBP15.9■□□□□ 0.14
SMAD4-209ENST00000589941 HAX1O00165 279 aa15.89■□□□□ 0.13
SMAD4-209ENST00000589941 ARHGEF11O15085 1522 aa15.88■□□□□ 0.13
SMAD4-209ENST00000589941 EVX2Q03828 476 aa15.87■□□□□ 0.13
SMAD4-209ENST00000589941 DCAF8Q5TAQ9 597 aa15.87■□□□□ 0.13
SMAD4-209ENST00000589941 FAM212AQ96EL1 285 aa15.85■□□□□ 0.13
SMAD4-209ENST00000589941 CIZ1Q9ULV3 898 aaPredicted RBP15.85■□□□□ 0.13
SMAD4-209ENST00000589941 RTN4Q9NQC3 1192 aaKnown RBP15.82■□□□□ 0.12
SMAD4-209ENST00000589941 ZRANB1Q9UGI0 708 aa15.81■□□□□ 0.12
SMAD4-209ENST00000589941 GSE1Q14687 1217 aa15.8■□□□□ 0.12
SMAD4-209ENST00000589941 PAK3O75914 559 aaPredicted RBP15.79■□□□□ 0.12
SMAD4-209ENST00000589941 PKD2Q13563 968 aa15.78■□□□□ 0.12
SMAD4-209ENST00000589941 CCDC61Q9Y6R9 512 aa15.78■□□□□ 0.12
SMAD4-209ENST00000589941 CEP164Q9UPV0 1460 aa15.78■□□□□ 0.12
SMAD4-209ENST00000589941 AMER1Q5JTC6 1135 aaPredicted RBP15.77■□□□□ 0.12
SMAD4-209ENST00000589941 CADPSQ9ULU8 1353 aa15.76■□□□□ 0.11
SMAD4-209ENST00000589941 MROH2BQ7Z745 1585 aa15.75■□□□□ 0.11
SMAD4-209ENST00000589941 PHF12Q96QT6 1004 aa15.71■□□□□ 0.11
SMAD4-209ENST00000589941 PYGBP11216 843 aa15.7■□□□□ 0.1
SMAD4-209ENST00000589941 URB2Q14146 1524 aaKnown RBP15.69■□□□□ 0.1
SMAD4-209ENST00000589941 ARAP1Q96P48 1450 aa15.69■□□□□ 0.1
SMAD4-209ENST00000589941 FANCD2Q9BXW9 1451 aa15.69■□□□□ 0.1
SMAD4-209ENST00000589941 ZNF579Q8NAF0 562 aaKnown RBP15.68■□□□□ 0.1
SMAD4-209ENST00000589941 CHD1O14646 1710 aa15.68■□□□□ 0.1
SMAD4-209ENST00000589941 ECM2O94769 699 aaPredicted RBP15.65■□□□□ 0.1
SMAD4-209ENST00000589941 KIF12Q96FN5 646 aa15.62■□□□□ 0.09
SMAD4-209ENST00000589941 ZNF608Q9ULD9 1512 aaPredicted RBP15.62■□□□□ 0.09
SMAD4-209ENST00000589941 CHRM1P11229 460 aaPredicted RBP15.61■□□□□ 0.09
SMAD4-209ENST00000589941 WIZO95785 1651 aa15.6■□□□□ 0.09
SMAD4-209ENST00000589941 CYB5RLQ6IPT4 315 aa15.6■□□□□ 0.09
SMAD4-209ENST00000589941 MAP3K13O43283 966 aa15.59■□□□□ 0.09
SMAD4-209ENST00000589941 EIF4G3O43432 1585 aaKnown RBP15.58■□□□□ 0.08
SMAD4-209ENST00000589941 PRDM2Q13029 1718 aa15.57■□□□□ 0.08
SMAD4-209ENST00000589941 RGL2O15211 777 aa15.55■□□□□ 0.08
SMAD4-209ENST00000589941 RNF25Q96BH1 459 aaPredicted RBP15.55■□□□□ 0.08
SMAD4-209ENST00000589941 MS4A3Q96HJ5 214 aa15.52■□□□□ 0.08
SMAD4-209ENST00000589941 PCDHB13Q9Y5F0 798 aa15.52■□□□□ 0.08
SMAD4-209ENST00000589941 SP7Q8TDD2 431 aaPredicted RBP15.51■□□□□ 0.07
SMAD4-209ENST00000589941 CFTRP13569 1480 aa15.5■□□□□ 0.07
SMAD4-209ENST00000589941 GALR2O43603 387 aaPredicted RBP15.49■□□□□ 0.07
SMAD4-209ENST00000589941 GABBR2O75899 941 aa15.49■□□□□ 0.07
SMAD4-209ENST00000589941 IFNL1Q8IU54 200 aa15.49■□□□□ 0.07
SMAD4-209ENST00000589941 PCDHB8Q9UN66 801 aa15.49■□□□□ 0.07
SMAD4-209ENST00000589941 SGIP1Q9BQI5 828 aa15.47■□□□□ 0.07
SMAD4-209ENST00000589941 TRPC6Q9Y210 931 aa15.44■□□□□ 0.06
SMAD4-209ENST00000589941 IFT140Q96RY7 1462 aa15.44■□□□□ 0.06
SMAD4-209ENST00000589941 RIOK3O14730 519 aaKnown RBP15.42■□□□□ 0.06
SMAD4-209ENST00000589941 RSF1Q96T23 1441 aaPredicted RBP15.42■□□□□ 0.06
SMAD4-209ENST00000589941 ZNF467Q7Z7K2 595 aaPredicted RBP15.41■□□□□ 0.06
SMAD4-209ENST00000589941 CLCN6P51797 869 aa15.4■□□□□ 0.06
SMAD4-209ENST00000589941 CLASP1Q7Z460 1538 aa15.36■□□□□ 0.05
SMAD4-209ENST00000589941 TARBP1Q13395 1621 aaKnown RBP15.35■□□□□ 0.05
SMAD4-209ENST00000589941 TOPBP1Q92547 1522 aa15.35■□□□□ 0.05
SMAD4-209ENST00000589941 VGFO15240 615 aaPredicted RBP15.31■□□□□ 0.04
SMAD4-209ENST00000589941 AQRO60306 1485 aaKnown RBP eCLIP15.3■□□□□ 0.04
SMAD4-209ENST00000589941 PSEN1P49768 467 aa15.3■□□□□ 0.04
SMAD4-209ENST00000589941 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP15.29■□□□□ 0.04
SMAD4-209ENST00000589941 PDAP1Q13442 181 aaKnown RBP15.29■□□□□ 0.04
SMAD4-209ENST00000589941 ILDR1Q86SU0 546 aaPredicted RBP15.29■□□□□ 0.04
SMAD4-209ENST00000589941 ZFP91Q96JP5 570 aaPredicted RBP15.29■□□□□ 0.04
SMAD4-209ENST00000589941 BMP2KQ9NSY1 1161 aaPredicted RBP15.27■□□□□ 0.04
SMAD4-209ENST00000589941 TOP2AP11388 1531 aaKnown RBP15.27■□□□□ 0.03
SMAD4-209ENST00000589941 DNMBPQ6XZF7 1577 aa15.25■□□□□ 0.03
SMAD4-209ENST00000589941 KIF13AQ9H1H9 1805 aa15.25■□□□□ 0.03
SMAD4-209ENST00000589941 TIE1P35590 1138 aa15.25■□□□□ 0.03
SMAD4-209ENST00000589941 TMEM106CQ9BVX2 250 aa15.24■□□□□ 0.03
SMAD4-209ENST00000589941 TTLL13PA6NNM8 815 aa15.22■□□□□ 0.03
SMAD4-209ENST00000589941 POTEIP0CG38 1075 aa15.22■□□□□ 0.03
SMAD4-209ENST00000589941 TAOK2Q9UL54 1235 aa15.22■□□□□ 0.03
SMAD4-209ENST00000589941 CHGAP10645 457 aaKnown RBP15.2■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 10.7 ms