RNA–Protein interactions for RNA: ENST00000582448.5

SS18-221, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 5

Gene SS18, Length 585 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-221ENST00000582448 ATAD2BQ9ULI0 1458 aa19.36■□□□□ 0.69
SS18-221ENST00000582448 C19orf67A6NJJ6 358 aa19.35■□□□□ 0.69
SS18-221ENST00000582448 MIER1Q8N108 512 aa19.34■□□□□ 0.69
SS18-221ENST00000582448 FBXO3Q9UK99 471 aa19.34■□□□□ 0.69
SS18-221ENST00000582448 NESP48681 1621 aa19.29■□□□□ 0.68
SS18-221ENST00000582448 PLCD3Q8N3E9 789 aa19.25■□□□□ 0.67
SS18-221ENST00000582448 SMARCA2P51531 1590 aa19.23■□□□□ 0.67
SS18-221ENST00000582448 SMARCA4P51532 1647 aa19.22■□□□□ 0.67
SS18-221ENST00000582448 CD44P16070 742 aaKnown RBP19.19■□□□□ 0.66
SS18-221ENST00000582448 SP7Q8TDD2 431 aaPredicted RBP19.19■□□□□ 0.66
SS18-221ENST00000582448 HMGXB3Q12766 1538 aa19.19■□□□□ 0.66
SS18-221ENST00000582448 NPM1P06748 294 aaKnown RBP eCLIP19.18■□□□□ 0.66
SS18-221ENST00000582448 BAZ1BQ9UIG0 1483 aaKnown RBP19.17■□□□□ 0.66
SS18-221ENST00000582448 PLEKHG5O94827 1062 aa19.17■□□□□ 0.66
SS18-221ENST00000582448 VASPP50552 380 aaPredicted RBP19.17■□□□□ 0.66
SS18-221ENST00000582448 BAZ1AQ9NRL2 1556 aaPredicted RBP19.09■□□□□ 0.65
SS18-221ENST00000582448 TRIM41Q8WV44 630 aa19.04■□□□□ 0.64
SS18-221ENST00000582448 ZRANB1Q9UGI0 708 aa19.04■□□□□ 0.64
SS18-221ENST00000582448 THOC2Q8NI27 1593 aaKnown RBP19.01■□□□□ 0.63
SS18-221ENST00000582448 LAMC3Q9Y6N6 1575 aa19■□□□□ 0.63
SS18-221ENST00000582448 PDS5BQ9NTI5 1447 aa19■□□□□ 0.63
SS18-221ENST00000582448 ZBTB47Q9UFB7 747 aaPredicted RBP18.99■□□□□ 0.63
SS18-221ENST00000582448 MROH2BQ7Z745 1585 aa18.98■□□□□ 0.63
SS18-221ENST00000582448 RASEFQ8IZ41 740 aa18.97■□□□□ 0.63
SS18-221ENST00000582448 PEG3Q9GZU2 1588 aa18.96■□□□□ 0.63
SS18-221ENST00000582448 NUBP1P53384 320 aa18.95■□□□□ 0.62
SS18-221ENST00000582448 PAK3O75914 559 aaPredicted RBP18.93■□□□□ 0.62
SS18-221ENST00000582448 IFNLR1Q8IU57 520 aaPredicted RBP18.93■□□□□ 0.62
SS18-221ENST00000582448 ZNF579Q8NAF0 562 aaKnown RBP18.93■□□□□ 0.62
SS18-221ENST00000582448 TSPYL2Q9H2G4 693 aaPredicted RBP18.93■□□□□ 0.62
SS18-221ENST00000582448 KIF21AQ7Z4S6 1674 aa18.92■□□□□ 0.62
SS18-221ENST00000582448 GABBR2O75899 941 aa18.91■□□□□ 0.62
SS18-221ENST00000582448 KLHL34Q8N239 644 aa18.9■□□□□ 0.62
SS18-221ENST00000582448 CADPSQ9ULU8 1353 aa18.89■□□□□ 0.61
SS18-221ENST00000582448 PHF12Q96QT6 1004 aa18.87■□□□□ 0.61
SS18-221ENST00000582448 CCDC61Q9Y6R9 512 aa18.82■□□□□ 0.6
SS18-221ENST00000582448 MRC2Q9UBG0 1479 aa18.81■□□□□ 0.6
SS18-221ENST00000582448 WIZO95785 1651 aa18.73■□□□□ 0.59
SS18-221ENST00000582448 GALR2O43603 387 aaPredicted RBP18.71■□□□□ 0.59
SS18-221ENST00000582448 FAM212AQ96EL1 285 aa18.71■□□□□ 0.59
SS18-221ENST00000582448 WDR62O43379 1518 aa18.7■□□□□ 0.58
SS18-221ENST00000582448 CLCN6P51797 869 aa18.7■□□□□ 0.58
SS18-221ENST00000582448 SPOCK2Q92563 424 aa18.7■□□□□ 0.58
SS18-221ENST00000582448 CEP164Q9UPV0 1460 aa18.69■□□□□ 0.58
SS18-221ENST00000582448 DCAF8Q5TAQ9 597 aa18.68■□□□□ 0.58
SS18-221ENST00000582448 FANCD2Q9BXW9 1451 aa18.66■□□□□ 0.58
SS18-221ENST00000582448 KIF12Q96FN5 646 aa18.66■□□□□ 0.58
SS18-221ENST00000582448 MS4A3Q96HJ5 214 aa18.63■□□□□ 0.57
SS18-221ENST00000582448 MAP3K13O43283 966 aa18.6■□□□□ 0.57
SS18-221ENST00000582448 POTEIP0CG38 1075 aa18.58■□□□□ 0.56
SS18-221ENST00000582448 CFTRP13569 1480 aa18.56■□□□□ 0.56
SS18-221ENST00000582448 GSE1Q14687 1217 aa18.54■□□□□ 0.56
SS18-221ENST00000582448 PYGBP11216 843 aa18.52■□□□□ 0.56
SS18-221ENST00000582448 RSF1Q96T23 1441 aaPredicted RBP18.5■□□□□ 0.55
SS18-221ENST00000582448 URB2Q14146 1524 aaKnown RBP18.5■□□□□ 0.55
SS18-221ENST00000582448 CIZ1Q9ULV3 898 aaPredicted RBP18.49■□□□□ 0.55
SS18-221ENST00000582448 DCBLD2Q96PD2 775 aa18.47■□□□□ 0.55
SS18-221ENST00000582448 TRPC6Q9Y210 931 aa18.47■□□□□ 0.55
SS18-221ENST00000582448 PCDHB13Q9Y5F0 798 aa18.46■□□□□ 0.55
SS18-221ENST00000582448 TOP2AP11388 1531 aaKnown RBP18.44■□□□□ 0.54
SS18-221ENST00000582448 SGIP1Q9BQI5 828 aa18.42■□□□□ 0.54
SS18-221ENST00000582448 IFNL1Q8IU54 200 aa18.41■□□□□ 0.54
SS18-221ENST00000582448 CHRM1P11229 460 aaPredicted RBP18.36■□□□□ 0.53
SS18-221ENST00000582448 ZNF608Q9ULD9 1512 aaPredicted RBP18.36■□□□□ 0.53
SS18-221ENST00000582448 ATMINO43313 823 aaPredicted RBP18.33■□□□□ 0.52
SS18-221ENST00000582448 CYB5RLQ6IPT4 315 aa18.33■□□□□ 0.52
SS18-221ENST00000582448 PCDHB8Q9UN66 801 aa18.33■□□□□ 0.52
SS18-221ENST00000582448 RIMBP3CA6NJZ7 1639 aa18.33■□□□□ 0.52
SS18-221ENST00000582448 RIMBP3BA6NNM3 1639 aa18.33■□□□□ 0.52
SS18-221ENST00000582448 RIMBP3Q9UFD9 1639 aa18.33■□□□□ 0.52
SS18-221ENST00000582448 ASTLQ6HA08 431 aaPredicted RBP18.32■□□□□ 0.52
SS18-221ENST00000582448 PELP1Q8IZL8 1130 aaKnown RBP18.32■□□□□ 0.52
SS18-221ENST00000582448 BMP2KQ9NSY1 1161 aaPredicted RBP18.32■□□□□ 0.52
SS18-221ENST00000582448 IFT140Q96RY7 1462 aa18.32■□□□□ 0.52
SS18-221ENST00000582448 CCDC88BA6NC98 1476 aa18.31■□□□□ 0.52
SS18-221ENST00000582448 TIE1P35590 1138 aa18.28■□□□□ 0.52
SS18-221ENST00000582448 ATN1P54259 1190 aaPredicted RBP18.27■□□□□ 0.52
SS18-221ENST00000582448 ARHGEF11O15085 1522 aa18.26■□□□□ 0.51
SS18-221ENST00000582448 TOPBP1Q92547 1522 aa18.25■□□□□ 0.51
SS18-221ENST00000582448 TTLL13PA6NNM8 815 aa18.23■□□□□ 0.51
SS18-221ENST00000582448 PRDM2Q13029 1718 aa18.2■□□□□ 0.5
SS18-221ENST00000582448 AQRO60306 1485 aaKnown RBP eCLIP18.2■□□□□ 0.55e-6■■■□□ 16.9
SS18-221ENST00000582448 ZNF467Q7Z7K2 595 aaPredicted RBP18.2■□□□□ 0.5
SS18-221ENST00000582448 TMEM106CQ9BVX2 250 aa18.17■□□□□ 0.5
SS18-221ENST00000582448 ABCC8Q09428 1581 aa18.17■□□□□ 0.5
SS18-221ENST00000582448 PKD2Q13563 968 aa18.15■□□□□ 0.5
SS18-221ENST00000582448 EIF4G3O43432 1585 aaKnown RBP18.15■□□□□ 0.5
SS18-221ENST00000582448 RNF25Q96BH1 459 aaPredicted RBP18.12■□□□□ 0.49
SS18-221ENST00000582448 DNMBPQ6XZF7 1577 aa18.12■□□□□ 0.49
SS18-221ENST00000582448 TRIM35Q9UPQ4 493 aa18.1■□□□□ 0.49
SS18-221ENST00000582448 SLC39A7Q92504 469 aa18.08■□□□□ 0.48
SS18-221ENST00000582448 ARAP1Q96P48 1450 aa18.07■□□□□ 0.48
SS18-221ENST00000582448 TDRD9Q8NDG6 1382 aaKnown RBP18.07■□□□□ 0.48
SS18-221ENST00000582448 PSEN1P49768 467 aa18.07■□□□□ 0.48
SS18-221ENST00000582448 METRNQ9UJH8 293 aa18.07■□□□□ 0.48
SS18-221ENST00000582448 RAD54L2Q9Y4B4 1467 aa18.07■□□□□ 0.48
SS18-221ENST00000582448 CHD1O14646 1710 aa18.06■□□□□ 0.48
SS18-221ENST00000582448 ECM2O94769 699 aaPredicted RBP18.05■□□□□ 0.48
SS18-221ENST00000582448 POLA1P09884 1462 aaPredicted RBP18.05■□□□□ 0.48
SS18-221ENST00000582448 SOGA1O94964 1423 aa18.05■□□□□ 0.48
Retrieved 100 of 20,778 RNA–protein pairs in 50.9 ms