RNA–Protein interactions for RNA: ENST00000580540.1

SREBF1-219, Transcript of sterol regulatory element binding transcription factor 1, humanhuman

TSL 4

Gene SREBF1, Length 540 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SREBF1-219ENST00000580540 RUSC2Q8N2Y8 1516 aa28.23■■■□□ 2.11
SREBF1-219ENST00000580540 PRG4Q92954 1404 aaPredicted RBP28.22■■■□□ 2.11
SREBF1-219ENST00000580540 TRHP20396 242 aaPredicted RBP28.19■■■□□ 2.1
SREBF1-219ENST00000580540 KIAA0586Q9BVV6 1533 aa28.15■■■□□ 2.1
SREBF1-219ENST00000580540 RAPGEF2Q9Y4G8 1499 aa28.07■■■□□ 2.08
SREBF1-219ENST00000580540 TTBK1Q5TCY1 1321 aaPredicted RBP27.97■■■□□ 2.07
SREBF1-219ENST00000580540 IQGAP2Q13576 1575 aa27.95■■■□□ 2.07
SREBF1-219ENST00000580540 CARMIL2Q6F5E8 1435 aa27.91■■■□□ 2.06
SREBF1-219ENST00000580540 CSRNP3Q8WYN3 585 aa27.88■■■□□ 2.05
SREBF1-219ENST00000580540 PTPRGP23470 1445 aa27.86■■■□□ 2.05
SREBF1-219ENST00000580540 NPM1P06748 294 aaKnown RBP eCLIP27.86■■■□□ 2.05
SREBF1-219ENST00000580540 FAM9AQ8IZU1 332 aaPredicted RBP27.86■■■□□ 2.05
SREBF1-219ENST00000580540 PRXQ9BXM0 1461 aa27.86■■■□□ 2.05
SREBF1-219ENST00000580540 CHIC1Q5VXU3 224 aa27.83■■■□□ 2.05
SREBF1-219ENST00000580540 TNIKQ9UKE5 1360 aa27.83■■■□□ 2.05
SREBF1-219ENST00000580540 DISP1Q96F81 1524 aa27.77■■■□□ 2.04
SREBF1-219ENST00000580540 UGGT2Q9NYU1 1516 aa27.77■■■□□ 2.04
SREBF1-219ENST00000580540 EEA1Q15075 1411 aa27.76■■■□□ 2.04
SREBF1-219ENST00000580540 CTTNBP2Q8WZ74 1663 aa27.76■■■□□ 2.03
SREBF1-219ENST00000580540 ADCY10Q96PN6 1610 aa27.75■■■□□ 2.03
SREBF1-219ENST00000580540 KIAA0556O60303 1618 aa27.68■■■□□ 2.02
SREBF1-219ENST00000580540 GOLGA3Q08378 1498 aa27.64■■■□□ 2.01
SREBF1-219ENST00000580540 UACAQ9BZF9 1416 aa27.63■■■□□ 2.01
SREBF1-219ENST00000580540 FAM69CQ0P6D2 419 aa27.62■■■□□ 2.01
SREBF1-219ENST00000580540 MAPKBP1O60336 1514 aa27.6■■■□□ 2.01
SREBF1-219ENST00000580540 RANGAP1P46060 587 aaPredicted RBP27.59■■■□□ 2.01
SREBF1-219ENST00000580540 P3H3Q8IVL6 736 aa27.59■■■□□ 2.01
SREBF1-219ENST00000580540 EHMT2Q96KQ7 1210 aa27.59■■■□□ 2.01
SREBF1-219ENST00000580540 ABCC2Q92887 1545 aa27.58■■■□□ 2.01
SREBF1-219ENST00000580540 UHRF1BP1LA0JNW5 1464 aa27.56■■■□□ 2
SREBF1-219ENST00000580540 KIF13AQ9H1H9 1805 aa27.55■■■□□ 2
SREBF1-219ENST00000580540 ABCC10Q5T3U5 1492 aa27.55■■■□□ 2
SREBF1-219ENST00000580540 PLB1Q6P1J6 1458 aa27.49■■□□□ 1.99
SREBF1-219ENST00000580540 KIF21BO75037 1637 aa27.48■■□□□ 1.99
SREBF1-219ENST00000580540 DIP2BQ9P265 1576 aa27.48■■□□□ 1.99
SREBF1-219ENST00000580540 ASXL2Q76L83 1435 aa27.47■■□□□ 1.99
SREBF1-219ENST00000580540 UBTFP17480 764 aaKnown RBP27.45■■□□□ 1.98
SREBF1-219ENST00000580540 KDM5BQ9UGL1 1544 aa27.44■■□□□ 1.98
SREBF1-219ENST00000580540 ZCCHC11Q5TAX3 1644 aaKnown RBP27.4■■□□□ 1.98
SREBF1-219ENST00000580540 ABCA8O94911 1581 aa27.39■■□□□ 1.97
SREBF1-219ENST00000580540 ARID3CA6NKF2 412 aa27.38■■□□□ 1.97
SREBF1-219ENST00000580540 SAMD9Q5K651 1589 aa27.38■■□□□ 1.97
SREBF1-219ENST00000580540 TSPOAP1O95153 1857 aa27.35■■□□□ 1.97
SREBF1-219ENST00000580540 FHOD3Q2V2M9 1422 aa27.32■■□□□ 1.96
SREBF1-219ENST00000580540 EPRSP07814 1512 aaKnown RBP27.28■■□□□ 1.96
SREBF1-219ENST00000580540 KCNH8Q96L42 1107 aa27.28■■□□□ 1.96
SREBF1-219ENST00000580540 WDR7Q9Y4E6 1490 aa27.26■■□□□ 1.95
SREBF1-219ENST00000580540 GLI2P10070 1586 aa27.26■■□□□ 1.95
SREBF1-219ENST00000580540 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP27.25■■□□□ 1.95
SREBF1-219ENST00000580540 HNRNPUL2Q1KMD3 747 aaKnown RBP27.25■■□□□ 1.95
SREBF1-219ENST00000580540 EFCAB5A4FU69 1503 aa27.23■■□□□ 1.95
SREBF1-219ENST00000580540 RAPGEF6Q8TEU7 1601 aa27.22■■□□□ 1.95
SREBF1-219ENST00000580540 ATP10BO94823 1461 aa27.21■■□□□ 1.95
SREBF1-219ENST00000580540 KDM6BO15054 1643 aa27.15■■□□□ 1.94
SREBF1-219ENST00000580540 MAP3K4Q9Y6R4 1608 aa27.13■■□□□ 1.93
SREBF1-219ENST00000580540 PPRC1Q5VV67 1664 aaKnown RBP27.12■■□□□ 1.93
SREBF1-219ENST00000580540 NUP153P49790 1475 aaKnown RBP27.12■■□□□ 1.93
SREBF1-219ENST00000580540 ATP1B4Q9UN42 357 aaPredicted RBP27.11■■□□□ 1.93
SREBF1-219ENST00000580540 ARHGAP35Q9NRY4 1499 aa27.09■■□□□ 1.93
SREBF1-219ENST00000580540 CD109Q6YHK3 1445 aa27.08■■□□□ 1.93
SREBF1-219ENST00000580540 TEX14Q8IWB6 1497 aa27.07■■□□□ 1.92
SREBF1-219ENST00000580540 PLEKHD1A6NEE1 506 aa27.03■■□□□ 1.92
SREBF1-219ENST00000580540 CFAP43Q8NDM7 1665 aa27.02■■□□□ 1.92
SREBF1-219ENST00000580540 FMN1Q68DA7 1419 aa27.02■■□□□ 1.92
SREBF1-219ENST00000580540 MAGI3Q5TCQ9 1506 aa26.97■■□□□ 1.91
SREBF1-219ENST00000580540 COL17A1Q9UMD9 1497 aaPredicted RBP26.96■■□□□ 1.91
SREBF1-219ENST00000580540 AEBP2Q6ZN18 517 aaPredicted RBP26.96■■□□□ 1.91
SREBF1-219ENST00000580540 CDK13Q14004 1512 aaKnown RBP26.94■■□□□ 1.9
SREBF1-219ENST00000580540 HECW1Q76N89 1606 aa26.9■■□□□ 1.9
SREBF1-219ENST00000580540 ABCA9Q8IUA7 1624 aa26.9■■□□□ 1.9
SREBF1-219ENST00000580540 CLIP1P30622 1438 aa26.9■■□□□ 1.9
SREBF1-219ENST00000580540 CDK11AQ9UQ88 783 aaPredicted RBP26.85■■□□□ 1.89
SREBF1-219ENST00000580540 CASKIN1Q8WXD9 1431 aa26.78■■□□□ 1.88
SREBF1-219ENST00000580540 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP26.77■■□□□ 1.88
SREBF1-219ENST00000580540 LOC105371045A0A1W2PR82 267 aa26.77■■□□□ 1.88
SREBF1-219ENST00000580540 PCF11O94913 1555 aaKnown RBP26.76■■□□□ 1.87
SREBF1-219ENST00000580540 PHLDB1Q86UU1 1377 aa26.76■■□□□ 1.87
SREBF1-219ENST00000580540 ARAP3Q8WWN8 1544 aa26.75■■□□□ 1.87
SREBF1-219ENST00000580540 NEO1Q92859 1461 aa26.74■■□□□ 1.87
SREBF1-219ENST00000580540 TTC37Q6PGP7 1564 aa26.73■■□□□ 1.87
SREBF1-219ENST00000580540 RAPGEF3O95398 923 aa26.72■■□□□ 1.87
SREBF1-219ENST00000580540 LRRIQ1Q96JM4 1722 aa26.72■■□□□ 1.87
SREBF1-219ENST00000580540 KDM4FA0A1W2PPD8 638 aa26.7■■□□□ 1.86
SREBF1-219ENST00000580540 TROQ12816 1431 aaPredicted RBP26.7■■□□□ 1.86
SREBF1-219ENST00000580540 CEP162Q5TB80 1403 aa26.7■■□□□ 1.86
SREBF1-219ENST00000580540 CCDC18Q5T9S5 1454 aa26.68■■□□□ 1.86
SREBF1-219ENST00000580540 FANCAO15360 1455 aa26.68■■□□□ 1.86
SREBF1-219ENST00000580540 FYCO1Q9BQS8 1478 aa26.68■■□□□ 1.86
SREBF1-219ENST00000580540 AKNAQ7Z591 1439 aa26.66■■□□□ 1.86
SREBF1-219ENST00000580540 KIF14Q15058 1648 aa26.65■■□□□ 1.86
SREBF1-219ENST00000580540 PLCH2O75038 1416 aa26.63■■□□□ 1.85
SREBF1-219ENST00000580540 CFAP74Q9C0B2 1584 aa26.61■■□□□ 1.85
SREBF1-219ENST00000580540 DENND4BO75064 1496 aaPredicted RBP26.61■■□□□ 1.85
SREBF1-219ENST00000580540 EFCAB2Q5VUJ9 269 aa26.6■■□□□ 1.85
SREBF1-219ENST00000580540 ADGRL1O94910 1474 aa26.58■■□□□ 1.85
SREBF1-219ENST00000580540 MYO5CQ9NQX4 1742 aa26.57■■□□□ 1.84
SREBF1-219ENST00000580540 SCAPERQ9BY12 1400 aa26.54■■□□□ 1.84
SREBF1-219ENST00000580540 FRMPD1Q5SYB0 1578 aa26.54■■□□□ 1.84
SREBF1-219ENST00000580540 ARHGAP5Q13017 1502 aa26.53■■□□□ 1.84
SREBF1-219ENST00000580540 RICTORQ6R327 1708 aa26.48■■□□□ 1.83
Retrieved 100 of 20,778 RNA–protein pairs in 12.6 ms