RNA–Protein interactions for RNA: ENST00000579483.1

MSI2-209, Transcript of musashi RNA binding protein 2, humanhuman

TSL 1 (best)

Gene MSI2, Length 5,141 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSI2-209ENST00000579483 SCAF1Q9H7N4 1312 aaKnown RBP13.96□□□□□ -0.17
MSI2-209ENST00000579483 EIF4G1Q04637 1599 aaKnown RBP13.94□□□□□ -0.18
MSI2-209ENST00000579483 ABCC8Q09428 1581 aa13.93□□□□□ -0.18
MSI2-209ENST00000579483 CCNB3Q8WWL7 1395 aa13.92□□□□□ -0.18
MSI2-209ENST00000579483 HAP1P54257 671 aaPredicted RBP13.92□□□□□ -0.18
MSI2-209ENST00000579483 KANK1Q14678 1352 aa13.92□□□□□ -0.18
MSI2-209ENST00000579483 NPM2Q86SE8 214 aaKnown RBP13.92□□□□□ -0.18
MSI2-209ENST00000579483 TNIKQ9UKE5 1360 aa13.91□□□□□ -0.18
MSI2-209ENST00000579483 MROH2BQ7Z745 1585 aa13.9□□□□□ -0.18
MSI2-209ENST00000579483 ATAD2BQ9ULI0 1458 aa13.89□□□□□ -0.19
MSI2-209ENST00000579483 CCDC88BA6NC98 1476 aa13.88□□□□□ -0.19
MSI2-209ENST00000579483 RRP7BPQ9NSQ0 103 aa13.88□□□□□ -0.19
MSI2-209ENST00000579483 HMGXB3Q12766 1538 aa13.88□□□□□ -0.19
MSI2-209ENST00000579483 KDM2AQ9Y2K7 1162 aa13.88□□□□□ -0.19
MSI2-209ENST00000579483 CDCA8Q53HL2 280 aa13.87□□□□□ -0.19
MSI2-209ENST00000579483 OSCARQ8IYS5 282 aa13.87□□□□□ -0.19
MSI2-209ENST00000579483 SMARCA4P51532 1647 aa13.87□□□□□ -0.19
MSI2-209ENST00000579483 ZNF316A6NFI3 1004 aaPredicted RBP13.87□□□□□ -0.19
MSI2-209ENST00000579483 TDRD9Q8NDG6 1382 aaKnown RBP13.86□□□□□ -0.19
MSI2-209ENST00000579483 CEP162Q5TB80 1403 aa13.86□□□□□ -0.19
MSI2-209ENST00000579483 TOP2AP11388 1531 aaKnown RBP13.85□□□□□ -0.19
MSI2-209ENST00000579483 EFCAB2Q5VUJ9 269 aa13.84□□□□□ -0.19
MSI2-209ENST00000579483 NCAPD3P42695 1498 aa13.84□□□□□ -0.19
MSI2-209ENST00000579483 A0A0G2JS52 829 aa13.78□□□□□ -0.2
MSI2-209ENST00000579483 MLECQ14165 292 aa13.78□□□□□ -0.2
MSI2-209ENST00000579483 FMN1Q68DA7 1419 aa13.78□□□□□ -0.2
MSI2-209ENST00000579483 FANCD2Q9BXW9 1451 aa13.78□□□□□ -0.2
MSI2-209ENST00000579483 WDR43Q15061 677 aaKnown RBP eCLIP13.77□□□□□ -0.21
MSI2-209ENST00000579483 POGKQ9P215 609 aa13.77□□□□□ -0.21
MSI2-209ENST00000579483 RGL3Q3MIN7 710 aa13.75□□□□□ -0.21
MSI2-209ENST00000579483 JPH4Q96JJ6 628 aa13.75□□□□□ -0.21
MSI2-209ENST00000579483 ZBTB7CA1YPR0 619 aa13.75□□□□□ -0.21
MSI2-209ENST00000579483 EIF4G2P78344 907 aaKnown RBP eCLIP13.74□□□□□ -0.21
MSI2-209ENST00000579483 RSPH4AQ5TD94 716 aa13.74□□□□□ -0.21
MSI2-209ENST00000579483 TMC1Q8TDI8 760 aa13.73□□□□□ -0.21
MSI2-209ENST00000579483 CFAP53Q96M91 514 aa13.72□□□□□ -0.21
MSI2-209ENST00000579483 BICRAQ9NZM4 1560 aa13.7□□□□□ -0.22
MSI2-209ENST00000579483 GGT6Q6P531 493 aa13.7□□□□□ -0.22
MSI2-209ENST00000579483 PEG3Q9GZU2 1588 aa13.69□□□□□ -0.22
MSI2-209ENST00000579483 CYB5RLQ6IPT4 315 aa13.68□□□□□ -0.22
MSI2-209ENST00000579483 GOLGA6L2Q8N9W4 650 aaPredicted RBP13.68□□□□□ -0.22
MSI2-209ENST00000579483 RAPGEF2Q9Y4G8 1499 aa13.68□□□□□ -0.22
MSI2-209ENST00000579483 LMOD2Q6P5Q4 547 aa13.67□□□□□ -0.22
MSI2-209ENST00000579483 PTPRGP23470 1445 aa13.65□□□□□ -0.22
MSI2-209ENST00000579483 BCL11AQ9H165 835 aa13.65□□□□□ -0.23
MSI2-209ENST00000579483 EID1Q9Y6B2 187 aa13.64□□□□□ -0.23
MSI2-209ENST00000579483 PLEKHG5O94827 1062 aa13.64□□□□□ -0.23
MSI2-209ENST00000579483 SENP3Q9H4L4 574 aaPredicted RBP13.64□□□□□ -0.23
MSI2-209ENST00000579483 UNC13AQ9UPW8 1703 aa13.63□□□□□ -0.23
MSI2-209ENST00000579483 KNSTRNQ9Y448 316 aa13.63□□□□□ -0.23
MSI2-209ENST00000579483 AEBP2Q6ZN18 517 aaPredicted RBP13.63□□□□□ -0.23
MSI2-209ENST00000579483 CARD11Q9BXL7 1154 aa13.63□□□□□ -0.23
MSI2-209ENST00000579483 WIZO95785 1651 aa13.62□□□□□ -0.23
MSI2-209ENST00000579483 ARHGAP35Q9NRY4 1499 aa13.62□□□□□ -0.23
MSI2-209ENST00000579483 SPAG9O60271 1321 aaKnown RBP13.61□□□□□ -0.23
MSI2-209ENST00000579483 ANKRD30AQ9BXX3 1397 aa13.61□□□□□ -0.23
MSI2-209ENST00000579483 NUDCQ9Y266 331 aa13.61□□□□□ -0.23
MSI2-209ENST00000579483 CCDC18Q5T9S5 1454 aa13.59□□□□□ -0.23
MSI2-209ENST00000579483 MYT1Q01538 1121 aa13.59□□□□□ -0.23
MSI2-209ENST00000579483 DDX10Q13206 875 aaKnown RBP13.59□□□□□ -0.23
MSI2-209ENST00000579483 CC2D2AQ9P2K1 1620 aa13.58□□□□□ -0.23
MSI2-209ENST00000579483 PNNQ9H307 717 aaKnown RBP13.57□□□□□ -0.24
MSI2-209ENST00000579483 RTL5Q5HYW3 569 aaPredicted RBP13.56□□□□□ -0.24
MSI2-209ENST00000579483 MYH16Q9H6N6 1097 aa13.56□□□□□ -0.24
MSI2-209ENST00000579483 LAMC3Q9Y6N6 1575 aa13.56□□□□□ -0.24
MSI2-209ENST00000579483 GAPVD1Q14C86 1478 aa13.55□□□□□ -0.24
MSI2-209ENST00000579483 VPS8Q8N3P4 1428 aa13.55□□□□□ -0.24
MSI2-209ENST00000579483 FAM9BQ8IZU0 186 aa13.55□□□□□ -0.24
MSI2-209ENST00000579483 KIF3BO15066 747 aa13.55□□□□□ -0.24
MSI2-209ENST00000579483 MRS2Q9HD23 443 aa13.54□□□□□ -0.24
MSI2-209ENST00000579483 WASHC2CQ9Y4E1 1318 aa13.54□□□□□ -0.24
MSI2-209ENST00000579483 TMF1P82094 1093 aa13.52□□□□□ -0.24
MSI2-209ENST00000579483 HNRNPUQ00839 825 aaKnown RBP eCLIP13.52□□□□□ -0.24
MSI2-209ENST00000579483 TIMELESSQ9UNS1 1208 aa13.52□□□□□ -0.24
MSI2-209ENST00000579483 PPM1GO15355 546 aaPredicted RBP13.52□□□□□ -0.25
MSI2-209ENST00000579483 MAPK8IP3Q9UPT6 1336 aa13.51□□□□□ -0.25
MSI2-209ENST00000579483 UPF2Q9HAU5 1272 aaKnown RBP13.51□□□□□ -0.25
MSI2-209ENST00000579483 SRPK2P78362 688 aaKnown RBP13.5□□□□□ -0.25
MSI2-209ENST00000579483 FAM69CQ0P6D2 419 aa13.5□□□□□ -0.25
MSI2-209ENST00000579483 MRC2Q9UBG0 1479 aa13.49□□□□□ -0.25
MSI2-209ENST00000579483 DCAF11Q8TEB1 546 aa13.49□□□□□ -0.25
MSI2-209ENST00000579483 NPHP1O15259 732 aa13.49□□□□□ -0.25
MSI2-209ENST00000579483 HDGFL2Q7Z4V5 671 aaPredicted RBP13.48□□□□□ -0.25
MSI2-209ENST00000579483 ARXQ96QS3 562 aa13.48□□□□□ -0.25
MSI2-209ENST00000579483 FGD5Q6ZNL6 1462 aa13.47□□□□□ -0.25
MSI2-209ENST00000579483 NUP155O75694 1391 aa13.47□□□□□ -0.25
MSI2-209ENST00000579483 PKD2Q13563 968 aa13.47□□□□□ -0.25
MSI2-209ENST00000579483 GRIN2BQ13224 1484 aa13.46□□□□□ -0.25
MSI2-209ENST00000579483 SALL2Q9Y467 1007 aaPredicted RBP13.46□□□□□ -0.26
MSI2-209ENST00000579483 IFT140Q96RY7 1462 aa13.45□□□□□ -0.26
MSI2-209ENST00000579483 FHOD3Q2V2M9 1422 aa13.45□□□□□ -0.26
MSI2-209ENST00000579483 HNRNPMP52272 730 aaKnown RBP eCLIP13.44□□□□□ -0.264e-8■■■■■ 28.9
MSI2-209ENST00000579483 SETD5Q9C0A6 1442 aa13.42□□□□□ -0.26
MSI2-209ENST00000579483 EIF3AQ14152 1382 aaKnown RBP13.42□□□□□ -0.26
MSI2-209ENST00000579483 CHMP4BQ9H444 224 aaKnown RBP13.41□□□□□ -0.26
MSI2-209ENST00000579483 CHMP4AQ9BY43 222 aa13.41□□□□□ -0.26
MSI2-209ENST00000579483 STK26Q9P289 416 aa13.41□□□□□ -0.26
MSI2-209ENST00000579483 HSP90AA1P07900 732 aaKnown RBP13.4□□□□□ -0.26
MSI2-209ENST00000579483 EIF5BO60841 1220 aaKnown RBP13.39□□□□□ -0.27
MSI2-209ENST00000579483 UACAQ9BZF9 1416 aa13.38□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms