RNA–Protein interactions for RNA: ENST00000576218.5

SMG6-220, Transcript of SMG6, nonsense mediated mRNA decay factor, humanhuman

TSL 3

Gene SMG6, Length 902 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMG6-220ENST00000576218 PRG4Q92954 1404 aaPredicted RBP25.67■■□□□ 1.7
SMG6-220ENST00000576218 ERCC6L2Q5T890 1561 aa25.66■■□□□ 1.7
SMG6-220ENST00000576218 KIAA0586Q9BVV6 1533 aa25.65■■□□□ 1.7
SMG6-220ENST00000576218 RAPGEF2Q9Y4G8 1499 aa25.63■■□□□ 1.69
SMG6-220ENST00000576218 IQGAP2Q13576 1575 aa25.52■■□□□ 1.68
SMG6-220ENST00000576218 TRHP20396 242 aaPredicted RBP25.52■■□□□ 1.68
SMG6-220ENST00000576218 EEA1Q15075 1411 aa25.46■■□□□ 1.67
SMG6-220ENST00000576218 CARMIL2Q6F5E8 1435 aa25.46■■□□□ 1.67
SMG6-220ENST00000576218 CHIC1Q5VXU3 224 aa25.46■■□□□ 1.67
SMG6-220ENST00000576218 FAM9AQ8IZU1 332 aaPredicted RBP25.45■■□□□ 1.66
SMG6-220ENST00000576218 CSRNP3Q8WYN3 585 aa25.45■■□□□ 1.66
SMG6-220ENST00000576218 TTBK1Q5TCY1 1321 aaPredicted RBP25.44■■□□□ 1.66
SMG6-220ENST00000576218 PRXQ9BXM0 1461 aa25.44■■□□□ 1.66
SMG6-220ENST00000576218 CTTNBP2Q8WZ74 1663 aa25.39■■□□□ 1.66
SMG6-220ENST00000576218 NPM1P06748 294 aaKnown RBP eCLIP25.35■■□□□ 1.65
SMG6-220ENST00000576218 PTPRGP23470 1445 aa25.35■■□□□ 1.65
SMG6-220ENST00000576218 TNIKQ9UKE5 1360 aa25.34■■□□□ 1.65
SMG6-220ENST00000576218 UGGT2Q9NYU1 1516 aa25.32■■□□□ 1.64
SMG6-220ENST00000576218 DISP1Q96F81 1524 aa25.28■■□□□ 1.64
SMG6-220ENST00000576218 GOLGA3Q08378 1498 aa25.27■■□□□ 1.64
SMG6-220ENST00000576218 KIAA0556O60303 1618 aa25.26■■□□□ 1.63
SMG6-220ENST00000576218 ADCY10Q96PN6 1610 aa25.25■■□□□ 1.63
SMG6-220ENST00000576218 EHMT2Q96KQ7 1210 aa25.19■■□□□ 1.62
SMG6-220ENST00000576218 KIF21BO75037 1637 aa25.18■■□□□ 1.62
SMG6-220ENST00000576218 RANGAP1P46060 587 aaPredicted RBP25.17■■□□□ 1.62
SMG6-220ENST00000576218 UACAQ9BZF9 1416 aa25.16■■□□□ 1.62
SMG6-220ENST00000576218 MAPKBP1O60336 1514 aa25.12■■□□□ 1.61
SMG6-220ENST00000576218 P3H3Q8IVL6 736 aa25.11■■□□□ 1.61
SMG6-220ENST00000576218 ABCC2Q92887 1545 aa25.11■■□□□ 1.61
SMG6-220ENST00000576218 UBTFP17480 764 aaKnown RBP25.1■■□□□ 1.61
SMG6-220ENST00000576218 UHRF1BP1LA0JNW5 1464 aa25.09■■□□□ 1.61
SMG6-220ENST00000576218 FAM69CQ0P6D2 419 aa25.06■■□□□ 1.6
SMG6-220ENST00000576218 PLB1Q6P1J6 1458 aa25.03■■□□□ 1.6
SMG6-220ENST00000576218 ABCC10Q5T3U5 1492 aa25.02■■□□□ 1.6
SMG6-220ENST00000576218 SAMD9Q5K651 1589 aa25.01■■□□□ 1.59
SMG6-220ENST00000576218 KIF13AQ9H1H9 1805 aa25■■□□□ 1.59
SMG6-220ENST00000576218 DIP2BQ9P265 1576 aa24.98■■□□□ 1.59
SMG6-220ENST00000576218 ASXL2Q76L83 1435 aa24.98■■□□□ 1.59
SMG6-220ENST00000576218 KDM5BQ9UGL1 1544 aa24.97■■□□□ 1.59
SMG6-220ENST00000576218 ZCCHC11Q5TAX3 1644 aaKnown RBP24.97■■□□□ 1.59
SMG6-220ENST00000576218 ABCA8O94911 1581 aa24.96■■□□□ 1.59
SMG6-220ENST00000576218 FHOD3Q2V2M9 1422 aa24.94■■□□□ 1.58
SMG6-220ENST00000576218 EFCAB5A4FU69 1503 aa24.93■■□□□ 1.58
SMG6-220ENST00000576218 ARID3CA6NKF2 412 aa24.91■■□□□ 1.58
SMG6-220ENST00000576218 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP24.86■■□□□ 1.57
SMG6-220ENST00000576218 HNRNPUL2Q1KMD3 747 aaKnown RBP24.86■■□□□ 1.57
SMG6-220ENST00000576218 RAPGEF6Q8TEU7 1601 aa24.86■■□□□ 1.57
SMG6-220ENST00000576218 WDR7Q9Y4E6 1490 aa24.84■■□□□ 1.57
SMG6-220ENST00000576218 TSPOAP1O95153 1857 aa24.83■■□□□ 1.57
SMG6-220ENST00000576218 EPRSP07814 1512 aaKnown RBP24.81■■□□□ 1.56
SMG6-220ENST00000576218 KCNH8Q96L42 1107 aa24.79■■□□□ 1.56
SMG6-220ENST00000576218 GLI2P10070 1586 aa24.79■■□□□ 1.56
SMG6-220ENST00000576218 ATP10BO94823 1461 aa24.76■■□□□ 1.55
SMG6-220ENST00000576218 ATP1B4Q9UN42 357 aaPredicted RBP24.75■■□□□ 1.55
SMG6-220ENST00000576218 ARHGAP35Q9NRY4 1499 aa24.75■■□□□ 1.55
SMG6-220ENST00000576218 FMN1Q68DA7 1419 aa24.73■■□□□ 1.55
SMG6-220ENST00000576218 NUP153P49790 1475 aaKnown RBP24.72■■□□□ 1.55
SMG6-220ENST00000576218 KDM6BO15054 1643 aa24.68■■□□□ 1.54
SMG6-220ENST00000576218 MAP3K4Q9Y6R4 1608 aa24.68■■□□□ 1.54
SMG6-220ENST00000576218 TEX14Q8IWB6 1497 aa24.68■■□□□ 1.54
SMG6-220ENST00000576218 HECW1Q76N89 1606 aa24.64■■□□□ 1.54
SMG6-220ENST00000576218 CD109Q6YHK3 1445 aa24.64■■□□□ 1.54
SMG6-220ENST00000576218 CLIP1P30622 1438 aa24.63■■□□□ 1.53
SMG6-220ENST00000576218 PLEKHD1A6NEE1 506 aa24.63■■□□□ 1.53
SMG6-220ENST00000576218 PPRC1Q5VV67 1664 aaKnown RBP24.62■■□□□ 1.53
SMG6-220ENST00000576218 CFAP43Q8NDM7 1665 aa24.62■■□□□ 1.53
SMG6-220ENST00000576218 CDK13Q14004 1512 aaKnown RBP24.58■■□□□ 1.53
SMG6-220ENST00000576218 CDK11AQ9UQ88 783 aaPredicted RBP24.54■■□□□ 1.52
SMG6-220ENST00000576218 MAGI3Q5TCQ9 1506 aa24.54■■□□□ 1.52
SMG6-220ENST00000576218 ABCA9Q8IUA7 1624 aa24.52■■□□□ 1.52
SMG6-220ENST00000576218 PCF11O94913 1555 aaKnown RBP24.5■■□□□ 1.51
SMG6-220ENST00000576218 CASKIN1Q8WXD9 1431 aa24.48■■□□□ 1.51
SMG6-220ENST00000576218 CEP162Q5TB80 1403 aa24.47■■□□□ 1.51
SMG6-220ENST00000576218 LOC105371045A0A1W2PR82 267 aa24.45■■□□□ 1.5
SMG6-220ENST00000576218 CCDC18Q5T9S5 1454 aa24.45■■□□□ 1.5
SMG6-220ENST00000576218 FYCO1Q9BQS8 1478 aa24.44■■□□□ 1.5
SMG6-220ENST00000576218 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP24.4■■□□□ 1.5
SMG6-220ENST00000576218 COL17A1Q9UMD9 1497 aaPredicted RBP24.4■■□□□ 1.5
SMG6-220ENST00000576218 TTC37Q6PGP7 1564 aa24.38■■□□□ 1.49
SMG6-220ENST00000576218 KIF14Q15058 1648 aa24.38■■□□□ 1.49
SMG6-220ENST00000576218 PHLDB1Q86UU1 1377 aa24.38■■□□□ 1.49
SMG6-220ENST00000576218 LRRIQ1Q96JM4 1722 aa24.38■■□□□ 1.49
SMG6-220ENST00000576218 TROQ12816 1431 aaPredicted RBP24.37■■□□□ 1.49
SMG6-220ENST00000576218 AEBP2Q6ZN18 517 aaPredicted RBP24.37■■□□□ 1.49
SMG6-220ENST00000576218 NEO1Q92859 1461 aa24.37■■□□□ 1.49
SMG6-220ENST00000576218 CFAP74Q9C0B2 1584 aa24.33■■□□□ 1.49
SMG6-220ENST00000576218 FANCAO15360 1455 aa24.32■■□□□ 1.48
SMG6-220ENST00000576218 ARAP3Q8WWN8 1544 aa24.32■■□□□ 1.48
SMG6-220ENST00000576218 MYO5CQ9NQX4 1742 aa24.28■■□□□ 1.48
SMG6-220ENST00000576218 AKNAQ7Z591 1439 aa24.27■■□□□ 1.48
SMG6-220ENST00000576218 PLCH2O75038 1416 aa24.27■■□□□ 1.48
SMG6-220ENST00000576218 RAPGEF3O95398 923 aa24.25■■□□□ 1.47
SMG6-220ENST00000576218 ARHGAP5Q13017 1502 aa24.24■■□□□ 1.47
SMG6-220ENST00000576218 EFCAB2Q5VUJ9 269 aa24.23■■□□□ 1.47
SMG6-220ENST00000576218 MTUS2Q5JR59 1369 aa24.23■■□□□ 1.47
SMG6-220ENST00000576218 DENND4BO75064 1496 aaPredicted RBP24.23■■□□□ 1.47
SMG6-220ENST00000576218 ADGRL1O94910 1474 aa24.21■■□□□ 1.47
SMG6-220ENST00000576218 VPS8Q8N3P4 1428 aa24.18■■□□□ 1.46
SMG6-220ENST00000576218 SCAPERQ9BY12 1400 aa24.16■■□□□ 1.46
SMG6-220ENST00000576218 FRMPD1Q5SYB0 1578 aa24.15■■□□□ 1.46
Retrieved 100 of 20,778 RNA–protein pairs in 11 ms