RNA–Protein interactions for RNA: ENST00000574662.1

SMPD3-212, Transcript of sphingomyelin phosphodiesterase 3, humanhuman

TSL 3

Gene SMPD3, Length 1,755 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD3-212ENST00000574662 NUP160Q12769 1436 aa25.5■■□□□ 1.67
SMPD3-212ENST00000574662 CEP170Q5SW79 1584 aa25.5■■□□□ 1.67
SMPD3-212ENST00000574662 RANGAP1P46060 587 aaPredicted RBP25.47■■□□□ 1.67
SMPD3-212ENST00000574662 KIAA0586Q9BVV6 1533 aa25.43■■□□□ 1.66
SMPD3-212ENST00000574662 OSCARQ8IYS5 282 aa25.42■■□□□ 1.66
SMPD3-212ENST00000574662 CTTNBP2Q8WZ74 1663 aa25.42■■□□□ 1.66
SMPD3-212ENST00000574662 CEP162Q5TB80 1403 aa25.38■■□□□ 1.65
SMPD3-212ENST00000574662 IQGAP2Q13576 1575 aa25.36■■□□□ 1.65
SMPD3-212ENST00000574662 JPH4Q96JJ6 628 aa25.33■■□□□ 1.65
SMPD3-212ENST00000574662 CLIP1P30622 1438 aa25.32■■□□□ 1.64
SMPD3-212ENST00000574662 CLASP1Q7Z460 1538 aa25.31■■□□□ 1.64
SMPD3-212ENST00000574662 HRCP23327 699 aa25.28■■□□□ 1.64
SMPD3-212ENST00000574662 P3H3Q8IVL6 736 aa25.27■■□□□ 1.64
SMPD3-212ENST00000574662 UGGT2Q9NYU1 1516 aa25.26■■□□□ 1.63
SMPD3-212ENST00000574662 ARHGAP35Q9NRY4 1499 aa25.26■■□□□ 1.63
SMPD3-212ENST00000574662 DISP1Q96F81 1524 aa25.2■■□□□ 1.62
SMPD3-212ENST00000574662 PRG4Q92954 1404 aaPredicted RBP25.19■■□□□ 1.62
SMPD3-212ENST00000574662 SHROOM2Q13796 1616 aa25.19■■□□□ 1.62
SMPD3-212ENST00000574662 SAMD9Q5K651 1589 aa25.18■■□□□ 1.62
SMPD3-212ENST00000574662 ARAP1Q96P48 1450 aa25.17■■□□□ 1.62
SMPD3-212ENST00000574662 EFCAB5A4FU69 1503 aa25.16■■□□□ 1.62
SMPD3-212ENST00000574662 FHOD3Q2V2M9 1422 aa25.16■■□□□ 1.62
SMPD3-212ENST00000574662 ERCC6L2Q5T890 1561 aa25.12■■□□□ 1.61
SMPD3-212ENST00000574662 KIAA0556O60303 1618 aa25.11■■□□□ 1.61
SMPD3-212ENST00000574662 CARMIL2Q6F5E8 1435 aa25.11■■□□□ 1.61
SMPD3-212ENST00000574662 TTBK1Q5TCY1 1321 aaPredicted RBP25.07■■□□□ 1.6
SMPD3-212ENST00000574662 PCGF6Q9BYE7 350 aa25.07■■□□□ 1.6
SMPD3-212ENST00000574662 VPS8Q8N3P4 1428 aa25.01■■□□□ 1.59
SMPD3-212ENST00000574662 PTPRGP23470 1445 aa24.98■■□□□ 1.59
SMPD3-212ENST00000574662 FMN1Q68DA7 1419 aa24.96■■□□□ 1.59
SMPD3-212ENST00000574662 RIMBP3CA6NJZ7 1639 aa24.94■■□□□ 1.58
SMPD3-212ENST00000574662 RIMBP3BA6NNM3 1639 aa24.94■■□□□ 1.58
SMPD3-212ENST00000574662 RIMBP3Q9UFD9 1639 aa24.94■■□□□ 1.58
SMPD3-212ENST00000574662 ARHGEF11O15085 1522 aa24.93■■□□□ 1.58
SMPD3-212ENST00000574662 ATP1B4Q9UN42 357 aaPredicted RBP24.89■■□□□ 1.57
SMPD3-212ENST00000574662 PLB1Q6P1J6 1458 aa24.89■■□□□ 1.57
SMPD3-212ENST00000574662 CASKIN1Q8WXD9 1431 aa24.88■■□□□ 1.57
SMPD3-212ENST00000574662 PCF11O94913 1555 aaKnown RBP24.86■■□□□ 1.57
SMPD3-212ENST00000574662 ABCA8O94911 1581 aa24.82■■□□□ 1.56
SMPD3-212ENST00000574662 FYCO1Q9BQS8 1478 aa24.82■■□□□ 1.56
SMPD3-212ENST00000574662 UACAQ9BZF9 1416 aa24.81■■□□□ 1.56
SMPD3-212ENST00000574662 TRIM26Q12899 539 aaPredicted RBP24.8■■□□□ 1.56
SMPD3-212ENST00000574662 RAPGEF6Q8TEU7 1601 aa24.8■■□□□ 1.56
SMPD3-212ENST00000574662 ARID3CA6NKF2 412 aa24.8■■□□□ 1.56
SMPD3-212ENST00000574662 CYB5RLQ6IPT4 315 aa24.8■■□□□ 1.56
SMPD3-212ENST00000574662 NUP153P49790 1475 aaKnown RBP24.77■■□□□ 1.56
SMPD3-212ENST00000574662 PPARGC1BQ86YN6 1023 aaKnown RBP24.74■■□□□ 1.55
SMPD3-212ENST00000574662 APLP2Q06481 763 aa24.73■■□□□ 1.55
SMPD3-212ENST00000574662 HECW1Q76N89 1606 aa24.73■■□□□ 1.55
SMPD3-212ENST00000574662 LRRIQ1Q96JM4 1722 aa24.72■■□□□ 1.55
SMPD3-212ENST00000574662 EPRSP07814 1512 aaKnown RBP24.71■■□□□ 1.55
SMPD3-212ENST00000574662 ABCC2Q92887 1545 aa24.71■■□□□ 1.55
SMPD3-212ENST00000574662 UHRF1BP1LA0JNW5 1464 aa24.7■■□□□ 1.54
SMPD3-212ENST00000574662 KANK4Q5T7N3 995 aaPredicted RBP24.7■■□□□ 1.54
SMPD3-212ENST00000574662 CDK13Q14004 1512 aaKnown RBP24.69■■□□□ 1.54
SMPD3-212ENST00000574662 ATP10BO94823 1461 aa24.68■■□□□ 1.54
SMPD3-212ENST00000574662 ADCY10Q96PN6 1610 aa24.67■■□□□ 1.54
SMPD3-212ENST00000574662 TIAM1Q13009 1591 aa24.66■■□□□ 1.54
SMPD3-212ENST00000574662 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP24.65■■□□□ 1.54
SMPD3-212ENST00000574662 HNRNPUL2Q1KMD3 747 aaKnown RBP24.65■■□□□ 1.54
SMPD3-212ENST00000574662 MAP3K1Q13233 1512 aa24.65■■□□□ 1.54
SMPD3-212ENST00000574662 CCDC18Q5T9S5 1454 aa24.64■■□□□ 1.53
SMPD3-212ENST00000574662 KDM5BQ9UGL1 1544 aa24.6■■□□□ 1.53
SMPD3-212ENST00000574662 CFAP43Q8NDM7 1665 aa24.59■■□□□ 1.53
SMPD3-212ENST00000574662 LRRC9Q6ZRR7 1453 aa24.57■■□□□ 1.52
SMPD3-212ENST00000574662 MAGI3Q5TCQ9 1506 aa24.57■■□□□ 1.52
SMPD3-212ENST00000574662 ZCCHC11Q5TAX3 1644 aaKnown RBP24.54■■□□□ 1.52
SMPD3-212ENST00000574662 CDK11AQ9UQ88 783 aaPredicted RBP24.54■■□□□ 1.52
SMPD3-212ENST00000574662 PLEKHD1A6NEE1 506 aa24.53■■□□□ 1.52
SMPD3-212ENST00000574662 NPM1P06748 294 aaKnown RBP eCLIP24.53■■□□□ 1.52
SMPD3-212ENST00000574662 MTUS2Q5JR59 1369 aa24.52■■□□□ 1.52
SMPD3-212ENST00000574662 TROQ12816 1431 aaPredicted RBP24.47■■□□□ 1.51
SMPD3-212ENST00000574662 EHBP1L1Q8N3D4 1523 aa24.44■■□□□ 1.5
SMPD3-212ENST00000574662 ZEB1P37275 1124 aaPredicted RBP24.43■■□□□ 1.5
SMPD3-212ENST00000574662 ASXL2Q76L83 1435 aa24.43■■□□□ 1.5
SMPD3-212ENST00000574662 KCNH8Q96L42 1107 aa24.42■■□□□ 1.5
SMPD3-212ENST00000574662 TRHP20396 242 aaPredicted RBP24.4■■□□□ 1.5
SMPD3-212ENST00000574662 NCOA2Q15596 1464 aa24.38■■□□□ 1.49
SMPD3-212ENST00000574662 WDR7Q9Y4E6 1490 aa24.38■■□□□ 1.49
SMPD3-212ENST00000574662 KIF14Q15058 1648 aa24.36■■□□□ 1.49
SMPD3-212ENST00000574662 PHLDB1Q86UU1 1377 aa24.36■■□□□ 1.49
SMPD3-212ENST00000574662 SUPT6HQ7KZ85 1726 aaKnown RBP24.34■■□□□ 1.49
SMPD3-212ENST00000574662 MAPKBP1O60336 1514 aa24.33■■□□□ 1.49
SMPD3-212ENST00000574662 ABCC10Q5T3U5 1492 aa24.3■■□□□ 1.48
SMPD3-212ENST00000574662 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP24.27■■□□□ 1.48
SMPD3-212ENST00000574662 CCNB3Q8WWL7 1395 aa24.26■■□□□ 1.47
SMPD3-212ENST00000574662 GPATCH8Q9UKJ3 1502 aaKnown RBP24.24■■□□□ 1.47
SMPD3-212ENST00000574662 TTC37Q6PGP7 1564 aa24.23■■□□□ 1.47
SMPD3-212ENST00000574662 MYOM3Q5VTT5 1437 aa24.23■■□□□ 1.47
SMPD3-212ENST00000574662 FGD6Q6ZV73 1430 aa24.18■■□□□ 1.46
SMPD3-212ENST00000574662 RRBP1Q9P2E9 1410 aaKnown RBP24.17■■□□□ 1.46
SMPD3-212ENST00000574662 FAM69CQ0P6D2 419 aa24.17■■□□□ 1.46
SMPD3-212ENST00000574662 CFDP1Q9UEE9 299 aaPredicted RBP24.17■■□□□ 1.46
SMPD3-212ENST00000574662 ABCA9Q8IUA7 1624 aa24.17■■□□□ 1.46
SMPD3-212ENST00000574662 CDC42BPAQ5VT25 1732 aa24.16■■□□□ 1.46
SMPD3-212ENST00000574662 ZNF644Q9H582 1327 aaPredicted RBP24.14■■□□□ 1.46
SMPD3-212ENST00000574662 PLCH2O75038 1416 aa24.14■■□□□ 1.45
SMPD3-212ENST00000574662 MIA2Q96PC5 1412 aa24.13■■□□□ 1.45
SMPD3-212ENST00000574662 DIP2BQ9P265 1576 aa24.13■■□□□ 1.45
SMPD3-212ENST00000574662 ZNF777Q9ULD5 760 aaPredicted RBP24.12■■□□□ 1.45
Retrieved 100 of 20,778 RNA–protein pairs in 33.9 ms