RNA–Protein interactions for RNA: ENST00000574408.5

USP43-205, Transcript of ubiquitin specific peptidase 43, humanhuman

TSL 1 (best)

Gene USP43, Length 3,425 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP43-205ENST00000574408 CTTNBP2Q8WZ74 1663 aa15.8■□□□□ 0.12
USP43-205ENST00000574408 AQRO60306 1485 aaKnown RBP eCLIP15.8■□□□□ 0.12
USP43-205ENST00000574408 FHAD1B1AJZ9 1412 aa15.8■□□□□ 0.12
USP43-205ENST00000574408 ERCC6Q03468 1493 aa15.79■□□□□ 0.12
USP43-205ENST00000574408 EFCAB5A4FU69 1503 aa15.78■□□□□ 0.12
USP43-205ENST00000574408 WDR62O43379 1518 aa15.77■□□□□ 0.12
USP43-205ENST00000574408 ATP1B4Q9UN42 357 aaPredicted RBP15.77■□□□□ 0.11
USP43-205ENST00000574408 TIAM1Q13009 1591 aa15.75■□□□□ 0.11
USP43-205ENST00000574408 IFT140Q96RY7 1462 aa15.75■□□□□ 0.11
USP43-205ENST00000574408 PBRM1Q86U86 1689 aa15.74■□□□□ 0.11
USP43-205ENST00000574408 PCF11O94913 1555 aaKnown RBP15.74■□□□□ 0.11
USP43-205ENST00000574408 MAP3K1Q13233 1512 aa15.73■□□□□ 0.11
USP43-205ENST00000574408 ZNF608Q9ULD9 1512 aaPredicted RBP15.73■□□□□ 0.11
USP43-205ENST00000574408 GRIN2BQ13224 1484 aa15.72■□□□□ 0.11
USP43-205ENST00000574408 RRBP1Q9P2E9 1410 aaKnown RBP15.71■□□□□ 0.11
USP43-205ENST00000574408 LRRC9Q6ZRR7 1453 aa15.7■□□□□ 0.1
USP43-205ENST00000574408 ADAMTS12P58397 1594 aa15.69■□□□□ 0.1
USP43-205ENST00000574408 CASKIN1Q8WXD9 1431 aa15.69■□□□□ 0.1
USP43-205ENST00000574408 FYCO1Q9BQS8 1478 aa15.69■□□□□ 0.1
USP43-205ENST00000574408 FMN1Q68DA7 1419 aa15.68■□□□□ 0.1
USP43-205ENST00000574408 CCNB3Q8WWL7 1395 aa15.68■□□□□ 0.1
USP43-205ENST00000574408 SAMD9Q5K651 1589 aa15.66■□□□□ 0.1
USP43-205ENST00000574408 CFAP43Q8NDM7 1665 aa15.66■□□□□ 0.1
USP43-205ENST00000574408 THOC2Q8NI27 1593 aaKnown RBP15.65■□□□□ 0.1
USP43-205ENST00000574408 ITGAEP38570 1179 aa15.63■□□□□ 0.09
USP43-205ENST00000574408 SNAPC4Q5SXM2 1469 aa15.62■□□□□ 0.09
USP43-205ENST00000574408 EIF4G3O43432 1585 aaKnown RBP15.62■□□□□ 0.09
USP43-205ENST00000574408 PHLDB1Q86UU1 1377 aa15.62■□□□□ 0.09
USP43-205ENST00000574408 IQGAP2Q13576 1575 aa15.61■□□□□ 0.09
USP43-205ENST00000574408 FAM50AQ14320 339 aaKnown RBP15.56■□□□□ 0.08
USP43-205ENST00000574408 MTUS2Q5JR59 1369 aa15.55■□□□□ 0.08
USP43-205ENST00000574408 GRIN2AQ12879 1464 aa15.55■□□□□ 0.08
USP43-205ENST00000574408 MAGI1Q96QZ7 1491 aaPredicted RBP15.53■□□□□ 0.08
USP43-205ENST00000574408 KIAA0586Q9BVV6 1533 aa15.52■□□□□ 0.08
USP43-205ENST00000574408 CHMP7Q8WUX9 453 aaPredicted RBP15.52■□□□□ 0.08
USP43-205ENST00000574408 DHX57Q6P158 1386 aaKnown RBP15.52■□□□□ 0.07
USP43-205ENST00000574408 FBLN2P98095 1184 aa15.52■□□□□ 0.07
USP43-205ENST00000574408 UGGT2Q9NYU1 1516 aa15.52■□□□□ 0.07
USP43-205ENST00000574408 LRRIQ1Q96JM4 1722 aa15.5■□□□□ 0.07
USP43-205ENST00000574408 SYNJ2O15056 1496 aa15.49■□□□□ 0.07
USP43-205ENST00000574408 HECW1Q76N89 1606 aa15.46■□□□□ 0.07
USP43-205ENST00000574408 CCDC18Q5T9S5 1454 aa15.46■□□□□ 0.07
USP43-205ENST00000574408 RAB3GAP2Q9H2M9 1393 aa15.46■□□□□ 0.07
USP43-205ENST00000574408 CLSPNQ9HAW4 1339 aa15.46■□□□□ 0.06
USP43-205ENST00000574408 ARID3CA6NKF2 412 aa15.46■□□□□ 0.06
USP43-205ENST00000574408 FGD6Q6ZV73 1430 aa15.45■□□□□ 0.06
USP43-205ENST00000574408 NCOA2Q15596 1464 aa15.45■□□□□ 0.06
USP43-205ENST00000574408 EHBP1L1Q8N3D4 1523 aa15.45■□□□□ 0.06
USP43-205ENST00000574408 DISP1Q96F81 1524 aa15.45■□□□□ 0.06
USP43-205ENST00000574408 KIAA0556O60303 1618 aa15.44■□□□□ 0.06
USP43-205ENST00000574408 EPRSP07814 1512 aaKnown RBP15.43■□□□□ 0.06
USP43-205ENST00000574408 CEP170Q5SW79 1584 aa15.43■□□□□ 0.06
USP43-205ENST00000574408 SETD5Q9C0A6 1442 aa15.43■□□□□ 0.06
USP43-205ENST00000574408 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP15.42■□□□□ 0.06
USP43-205ENST00000574408 MAGI3Q5TCQ9 1506 aa15.42■□□□□ 0.06
USP43-205ENST00000574408 SUPT6HQ7KZ85 1726 aaKnown RBP15.41■□□□□ 0.06
USP43-205ENST00000574408 CDK13Q14004 1512 aaKnown RBP15.41■□□□□ 0.06
USP43-205ENST00000574408 MYOM3Q5VTT5 1437 aa15.4■□□□□ 0.06
USP43-205ENST00000574408 NUP160Q12769 1436 aa15.39■□□□□ 0.05
USP43-205ENST00000574408 ZNF316A6NFI3 1004 aaPredicted RBP15.38■□□□□ 0.05
USP43-205ENST00000574408 JPH4Q96JJ6 628 aa15.37■□□□□ 0.05
USP43-205ENST00000574408 DIEXFQ68CQ4 756 aaKnown RBP15.36■□□□□ 0.05
USP43-205ENST00000574408 ARHGEF11O15085 1522 aa15.35■□□□□ 0.05
USP43-205ENST00000574408 NUP153P49790 1475 aaKnown RBP15.34■□□□□ 0.05
USP43-205ENST00000574408 CARMIL2Q6F5E8 1435 aa15.34■□□□□ 0.05
USP43-205ENST00000574408 RAPGEF6Q8TEU7 1601 aa15.33■□□□□ 0.04
USP43-205ENST00000574408 PTPRKQ15262 1439 aa15.32■□□□□ 0.04
USP43-205ENST00000574408 PTPN23Q9H3S7 1636 aa15.31■□□□□ 0.04
USP43-205ENST00000574408 PLB1Q6P1J6 1458 aa15.3■□□□□ 0.04
USP43-205ENST00000574408 MAPKBP1O60336 1514 aa15.3■□□□□ 0.04
USP43-205ENST00000574408 CDK11AQ9UQ88 783 aaPredicted RBP15.29■□□□□ 0.04
USP43-205ENST00000574408 HFM1A2PYH4 1435 aa15.26■□□□□ 0.03
USP43-205ENST00000574408 SCAF1Q9H7N4 1312 aaKnown RBP15.26■□□□□ 0.03
USP43-205ENST00000574408 TCOF1Q13428 1488 aaKnown RBP15.26■□□□□ 0.03
USP43-205ENST00000574408 YTHDC1Q96MU7 727 aaKnown RBP15.26■□□□□ 0.03
USP43-205ENST00000574408 MIA2Q96PC5 1412 aa15.25■□□□□ 0.03
USP43-205ENST00000574408 CHIC2Q9UKJ5 165 aa15.24■□□□□ 0.03
USP43-205ENST00000574408 NAIPQ13075 1403 aa15.23■□□□□ 0.03
USP43-205ENST00000574408 PRG4Q92954 1404 aaPredicted RBP15.23■□□□□ 0.03
USP43-205ENST00000574408 RRP7BPQ9NSQ0 103 aa15.22■□□□□ 0.03
USP43-205ENST00000574408 TROQ12816 1431 aaPredicted RBP15.22■□□□□ 0.03
USP43-205ENST00000574408 SIN3AQ96ST3 1273 aa15.22■□□□□ 0.03
USP43-205ENST00000574408 CHD1O14646 1710 aa15.21■□□□□ 0.03
USP43-205ENST00000574408 NEUROD1Q13562 356 aa15.21■□□□□ 0.03
USP43-205ENST00000574408 PELP1Q8IZL8 1130 aaKnown RBP15.2■□□□□ 0.02
USP43-205ENST00000574408 ABCA8O94911 1581 aa15.18■□□□□ 0.02
USP43-205ENST00000574408 UACAQ9BZF9 1416 aa15.18■□□□□ 0.02
USP43-205ENST00000574408 ZNF644Q9H582 1327 aaPredicted RBP15.17■□□□□ 0.02
USP43-205ENST00000574408 PTPRGP23470 1445 aa15.17■□□□□ 0.02
USP43-205ENST00000574408 PLEKHD1A6NEE1 506 aa15.15■□□□□ 0.02
USP43-205ENST00000574408 CFDP1Q9UEE9 299 aaPredicted RBP15.15■□□□□ 0.02
USP43-205ENST00000574408 ATP10BO94823 1461 aa15.14■□□□□ 0.01
USP43-205ENST00000574408 KIF14Q15058 1648 aa15.14■□□□□ 0.01
USP43-205ENST00000574408 AKNAQ7Z591 1439 aa15.14■□□□□ 0.01
USP43-205ENST00000574408 DAPK1P53355 1430 aa15.14■□□□□ 0.01
USP43-205ENST00000574408 ZNF777Q9ULD5 760 aaPredicted RBP15.12■□□□□ 0.01
USP43-205ENST00000574408 GPATCH8Q9UKJ3 1502 aaKnown RBP15.12■□□□□ 0.01
USP43-205ENST00000574408 ABCC5O15440 1437 aa15.12■□□□□ 0.01
USP43-205ENST00000574408 GCC2Q8IWJ2 1684 aa15.12■□□□□ 0.01
USP43-205ENST00000574408 TRIM52Q96A61 297 aa15.11■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms