RNA–Protein interactions for RNA: ENST00000573955.1

USP43-204, Transcript of ubiquitin specific peptidase 43, humanhuman

TSL 1 (best)

Gene USP43, Length 2,641 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP43-204ENST00000573955 TARBP1Q13395 1621 aaKnown RBP24.17■■□□□ 1.46
USP43-204ENST00000573955 HNRNPUL2Q1KMD3 747 aaKnown RBP24.16■■□□□ 1.46
USP43-204ENST00000573955 KANK4Q5T7N3 995 aaPredicted RBP24.16■■□□□ 1.46
USP43-204ENST00000573955 ABCA5Q8WWZ7 1642 aa24.13■■□□□ 1.45
USP43-204ENST00000573955 CUL7Q14999 1698 aa24.13■■□□□ 1.45
USP43-204ENST00000573955 WDR62O43379 1518 aa24.1■■□□□ 1.45
USP43-204ENST00000573955 THOC2Q8NI27 1593 aaKnown RBP24.07■■□□□ 1.44
USP43-204ENST00000573955 ATP1B4Q9UN42 357 aaPredicted RBP24.04■■□□□ 1.44
USP43-204ENST00000573955 FHOD3Q2V2M9 1422 aa24.02■■□□□ 1.44
USP43-204ENST00000573955 CTTNBP2Q8WZ74 1663 aa23.99■■□□□ 1.43
USP43-204ENST00000573955 IFT140Q96RY7 1462 aa23.97■■□□□ 1.43
USP43-204ENST00000573955 PBRM1Q86U86 1689 aa23.95■■□□□ 1.42
USP43-204ENST00000573955 FBLN2P98095 1184 aa23.95■■□□□ 1.42
USP43-204ENST00000573955 FHAD1B1AJZ9 1412 aa23.91■■□□□ 1.42
USP43-204ENST00000573955 PCF11O94913 1555 aaKnown RBP23.9■■□□□ 1.42
USP43-204ENST00000573955 EIF4G3O43432 1585 aaKnown RBP23.89■■□□□ 1.42
USP43-204ENST00000573955 TIAM1Q13009 1591 aa23.88■■□□□ 1.41
USP43-204ENST00000573955 GRIN2BQ13224 1484 aa23.88■■□□□ 1.41
USP43-204ENST00000573955 EFCAB5A4FU69 1503 aa23.87■■□□□ 1.41
USP43-204ENST00000573955 SNAPC4Q5SXM2 1469 aa23.86■■□□□ 1.41
USP43-204ENST00000573955 BCL11AQ9H165 835 aa23.84■■□□□ 1.41
USP43-204ENST00000573955 ITGAEP38570 1179 aa23.83■■□□□ 1.41
USP43-204ENST00000573955 ACIN1Q9UKV3 1341 aaKnown RBP23.82■■□□□ 1.4
USP43-204ENST00000573955 ADAMTS12P58397 1594 aa23.81■■□□□ 1.4
USP43-204ENST00000573955 PRKCSHP14314 528 aaPredicted RBP23.8■■□□□ 1.4
USP43-204ENST00000573955 LRRC9Q6ZRR7 1453 aa23.8■■□□□ 1.4
USP43-204ENST00000573955 RRBP1Q9P2E9 1410 aaKnown RBP23.78■■□□□ 1.4
USP43-204ENST00000573955 CHMP7Q8WUX9 453 aaPredicted RBP23.77■■□□□ 1.4
USP43-204ENST00000573955 CCNB3Q8WWL7 1395 aa23.77■■□□□ 1.4
USP43-204ENST00000573955 MAP3K1Q13233 1512 aa23.76■■□□□ 1.39
USP43-204ENST00000573955 CASKIN1Q8WXD9 1431 aa23.76■■□□□ 1.39
USP43-204ENST00000573955 FYCO1Q9BQS8 1478 aa23.76■■□□□ 1.39
USP43-204ENST00000573955 FMN1Q68DA7 1419 aa23.75■■□□□ 1.39
USP43-204ENST00000573955 SAMD9Q5K651 1589 aa23.75■■□□□ 1.39
USP43-204ENST00000573955 CFAP43Q8NDM7 1665 aa23.73■■□□□ 1.39
USP43-204ENST00000573955 ARID3CA6NKF2 412 aa23.73■■□□□ 1.39
USP43-204ENST00000573955 PHLDB1Q86UU1 1377 aa23.72■■□□□ 1.39
USP43-204ENST00000573955 IQGAP2Q13576 1575 aa23.68■■□□□ 1.38
USP43-204ENST00000573955 FAM50AQ14320 339 aaKnown RBP23.66■■□□□ 1.38
USP43-204ENST00000573955 GTF3C3Q9Y5Q9 886 aa23.66■■□□□ 1.38
USP43-204ENST00000573955 GRIN2AQ12879 1464 aa23.65■■□□□ 1.38
USP43-204ENST00000573955 CENPBP07199 599 aaPredicted RBP23.64■■□□□ 1.38
USP43-204ENST00000573955 NEUROD1Q13562 356 aa23.63■■□□□ 1.37
USP43-204ENST00000573955 MTUS2Q5JR59 1369 aa23.6■■□□□ 1.37
USP43-204ENST00000573955 LRRIQ1Q96JM4 1722 aa23.59■■□□□ 1.37
USP43-204ENST00000573955 MAGI1Q96QZ7 1491 aaPredicted RBP23.57■■□□□ 1.36
USP43-204ENST00000573955 SYNJ2O15056 1496 aa23.57■■□□□ 1.36
USP43-204ENST00000573955 CEP170Q5SW79 1584 aa23.55■■□□□ 1.36
USP43-204ENST00000573955 DHX57Q6P158 1386 aaKnown RBP23.53■■□□□ 1.36
USP43-204ENST00000573955 KIAA0586Q9BVV6 1533 aa23.52■■□□□ 1.36
USP43-204ENST00000573955 UGGT2Q9NYU1 1516 aa23.5■■□□□ 1.35
USP43-204ENST00000573955 RAB3GAP2Q9H2M9 1393 aa23.45■■□□□ 1.34
USP43-204ENST00000573955 DISP1Q96F81 1524 aa23.45■■□□□ 1.34
USP43-204ENST00000573955 JPH4Q96JJ6 628 aa23.45■■□□□ 1.34
USP43-204ENST00000573955 CDK13Q14004 1512 aaKnown RBP23.44■■□□□ 1.34
USP43-204ENST00000573955 NCOA2Q15596 1464 aa23.44■■□□□ 1.34
USP43-204ENST00000573955 MAGI3Q5TCQ9 1506 aa23.44■■□□□ 1.34
USP43-204ENST00000573955 HECW1Q76N89 1606 aa23.43■■□□□ 1.34
USP43-204ENST00000573955 KIAA0556O60303 1618 aa23.43■■□□□ 1.34
USP43-204ENST00000573955 FGD6Q6ZV73 1430 aa23.43■■□□□ 1.34
USP43-204ENST00000573955 EPRSP07814 1512 aaKnown RBP23.41■■□□□ 1.34
USP43-204ENST00000573955 CCDC18Q5T9S5 1454 aa23.4■■□□□ 1.34
USP43-204ENST00000573955 CHD1O14646 1710 aa23.4■■□□□ 1.34
USP43-204ENST00000573955 EHBP1L1Q8N3D4 1523 aa23.39■■□□□ 1.34
USP43-204ENST00000573955 SETD5Q9C0A6 1442 aa23.38■■□□□ 1.33
USP43-204ENST00000573955 NUP160Q12769 1436 aa23.38■■□□□ 1.33
USP43-204ENST00000573955 SUPT6HQ7KZ85 1726 aaKnown RBP23.37■■□□□ 1.33
USP43-204ENST00000573955 ERICH6Q7L0X2 663 aa23.37■■□□□ 1.33
USP43-204ENST00000573955 MYOM3Q5VTT5 1437 aa23.35■■□□□ 1.33
USP43-204ENST00000573955 CLSPNQ9HAW4 1339 aa23.32■■□□□ 1.32
USP43-204ENST00000573955 ZNF316A6NFI3 1004 aaPredicted RBP23.3■■□□□ 1.32
USP43-204ENST00000573955 DIEXFQ68CQ4 756 aaKnown RBP23.3■■□□□ 1.32
USP43-204ENST00000573955 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP23.29■■□□□ 1.32
USP43-204ENST00000573955 PLB1Q6P1J6 1458 aa23.29■■□□□ 1.32
USP43-204ENST00000573955 NUP153P49790 1475 aaKnown RBP23.28■■□□□ 1.32
USP43-204ENST00000573955 PTPRKQ15262 1439 aa23.27■■□□□ 1.32
USP43-204ENST00000573955 RAPGEF6Q8TEU7 1601 aa23.27■■□□□ 1.32
USP43-204ENST00000573955 PRG4Q92954 1404 aaPredicted RBP23.25■■□□□ 1.31
USP43-204ENST00000573955 CARMIL2Q6F5E8 1435 aa23.25■■□□□ 1.31
USP43-204ENST00000573955 ARHGEF11O15085 1522 aa23.24■■□□□ 1.31
USP43-204ENST00000573955 PTPN23Q9H3S7 1636 aa23.24■■□□□ 1.31
USP43-204ENST00000573955 CHIC2Q9UKJ5 165 aa23.21■■□□□ 1.31
USP43-204ENST00000573955 MAPKBP1O60336 1514 aa23.21■■□□□ 1.31
USP43-204ENST00000573955 ERCC6L2Q5T890 1561 aa23.21■■□□□ 1.31
USP43-204ENST00000573955 CDK11AQ9UQ88 783 aaPredicted RBP23.16■■□□□ 1.3
USP43-204ENST00000573955 RRP7BPQ9NSQ0 103 aa23.15■■□□□ 1.3
USP43-204ENST00000573955 SIN3AQ96ST3 1273 aa23.15■■□□□ 1.3
USP43-204ENST00000573955 ANP32EQ9BTT0 268 aa23.12■■□□□ 1.29
USP43-204ENST00000573955 HFM1A2PYH4 1435 aa23.12■■□□□ 1.29
USP43-204ENST00000573955 ZNF644Q9H582 1327 aaPredicted RBP23.1■■□□□ 1.29
USP43-204ENST00000573955 TCOF1Q13428 1488 aaKnown RBP23.1■■□□□ 1.29
USP43-204ENST00000573955 PTPRGP23470 1445 aa23.09■■□□□ 1.29
USP43-204ENST00000573955 NAIPQ13075 1403 aa23.09■■□□□ 1.29
USP43-204ENST00000573955 MIA2Q96PC5 1412 aa23.08■■□□□ 1.28
USP43-204ENST00000573955 TROQ12816 1431 aaPredicted RBP23.06■■□□□ 1.28
USP43-204ENST00000573955 ZNF777Q9ULD5 760 aaPredicted RBP23.03■■□□□ 1.28
USP43-204ENST00000573955 KIF14Q15058 1648 aa23.02■■□□□ 1.28
USP43-204ENST00000573955 ABCA8O94911 1581 aa23.02■■□□□ 1.28
USP43-204ENST00000573955 CFDP1Q9UEE9 299 aaPredicted RBP23■■□□□ 1.27
USP43-204ENST00000573955 PLEKHD1A6NEE1 506 aa22.99■■□□□ 1.27
Retrieved 100 of 20,778 RNA–protein pairs in 68.7 ms