RNA–Protein interactions for RNA: ENST00000573936.5

CHD3-216, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 3

Gene CHD3, Length 749 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-216ENST00000573936 CUL7Q14999 1698 aa18.47■□□□□ 0.55
CHD3-216ENST00000573936 CARMIL1Q5VZK9 1371 aa18.46■□□□□ 0.55
CHD3-216ENST00000573936 RUSC2Q8N2Y8 1516 aa18.46■□□□□ 0.55
CHD3-216ENST00000573936 PRG4Q92954 1404 aaPredicted RBP18.42■□□□□ 0.54
CHD3-216ENST00000573936 EEA1Q15075 1411 aa18.4■□□□□ 0.54
CHD3-216ENST00000573936 CSRNP3Q8WYN3 585 aa18.36■□□□□ 0.53
CHD3-216ENST00000573936 RAPGEF2Q9Y4G8 1499 aa18.35■□□□□ 0.53
CHD3-216ENST00000573936 JPH4Q96JJ6 628 aa18.35■□□□□ 0.53
CHD3-216ENST00000573936 KIF13AQ9H1H9 1805 aa18.33■□□□□ 0.52
CHD3-216ENST00000573936 NPM1P06748 294 aaKnown RBP eCLIP18.3■□□□□ 0.52
CHD3-216ENST00000573936 PRXQ9BXM0 1461 aa18.29■□□□□ 0.52
CHD3-216ENST00000573936 KIAA0586Q9BVV6 1533 aa18.28■□□□□ 0.52
CHD3-216ENST00000573936 FAM9AQ8IZU1 332 aaPredicted RBP18.27■□□□□ 0.52
CHD3-216ENST00000573936 ADCY10Q96PN6 1610 aa18.27■□□□□ 0.51
CHD3-216ENST00000573936 FAM69CQ0P6D2 419 aa18.23■□□□□ 0.51
CHD3-216ENST00000573936 MAPKBP1O60336 1514 aa18.22■□□□□ 0.51
CHD3-216ENST00000573936 DIP2BQ9P265 1576 aa18.2■□□□□ 0.5
CHD3-216ENST00000573936 ABCC10Q5T3U5 1492 aa18.2■□□□□ 0.5
CHD3-216ENST00000573936 IQGAP2Q13576 1575 aa18.17■□□□□ 0.5
CHD3-216ENST00000573936 CARMIL2Q6F5E8 1435 aa18.13■□□□□ 0.49
CHD3-216ENST00000573936 KIF21BO75037 1637 aa18.12■□□□□ 0.49
CHD3-216ENST00000573936 TTBK1Q5TCY1 1321 aaPredicted RBP18.12■□□□□ 0.49
CHD3-216ENST00000573936 PTPRGP23470 1445 aa18.11■□□□□ 0.49
CHD3-216ENST00000573936 CTTNBP2Q8WZ74 1663 aa18.1■□□□□ 0.49
CHD3-216ENST00000573936 UGGT2Q9NYU1 1516 aa18.08■□□□□ 0.49
CHD3-216ENST00000573936 TSPOAP1O95153 1857 aa18.08■□□□□ 0.49
CHD3-216ENST00000573936 TNIKQ9UKE5 1360 aa18.07■□□□□ 0.48
CHD3-216ENST00000573936 GOLGA3Q08378 1498 aa18.06■□□□□ 0.48
CHD3-216ENST00000573936 ABCC2Q92887 1545 aa18.05■□□□□ 0.48
CHD3-216ENST00000573936 KDM6BO15054 1643 aa18.05■□□□□ 0.48
CHD3-216ENST00000573936 DISP1Q96F81 1524 aa18.04■□□□□ 0.48
CHD3-216ENST00000573936 UBTFP17480 764 aaKnown RBP18.04■□□□□ 0.48
CHD3-216ENST00000573936 ILDR1Q86SU0 546 aaPredicted RBP18.03■□□□□ 0.48
CHD3-216ENST00000573936 ASXL2Q76L83 1435 aa18■□□□□ 0.47
CHD3-216ENST00000573936 EHMT2Q96KQ7 1210 aa18■□□□□ 0.47
CHD3-216ENST00000573936 KIAA0556O60303 1618 aa17.99■□□□□ 0.47
CHD3-216ENST00000573936 UHRF1BP1LA0JNW5 1464 aa17.99■□□□□ 0.47
CHD3-216ENST00000573936 UACAQ9BZF9 1416 aa17.98■□□□□ 0.47
CHD3-216ENST00000573936 KDM4FA0A1W2PPD8 638 aa17.97■□□□□ 0.47
CHD3-216ENST00000573936 PLB1Q6P1J6 1458 aa17.96■□□□□ 0.47
CHD3-216ENST00000573936 PPRC1Q5VV67 1664 aaKnown RBP17.95■□□□□ 0.46
CHD3-216ENST00000573936 ZCCHC11Q5TAX3 1644 aaKnown RBP17.94■□□□□ 0.46
CHD3-216ENST00000573936 GLI2P10070 1586 aa17.93■□□□□ 0.46
CHD3-216ENST00000573936 KDM5BQ9UGL1 1544 aa17.93■□□□□ 0.46
CHD3-216ENST00000573936 RANGAP1P46060 587 aaPredicted RBP17.92■□□□□ 0.46
CHD3-216ENST00000573936 P3H3Q8IVL6 736 aa17.91■□□□□ 0.46
CHD3-216ENST00000573936 SAMD9Q5K651 1589 aa17.89■□□□□ 0.45
CHD3-216ENST00000573936 EPRSP07814 1512 aaKnown RBP17.88■□□□□ 0.45
CHD3-216ENST00000573936 EFCAB5A4FU69 1503 aa17.88■□□□□ 0.45
CHD3-216ENST00000573936 MAP3K4Q9Y6R4 1608 aa17.87■□□□□ 0.45
CHD3-216ENST00000573936 WDR7Q9Y4E6 1490 aa17.82■□□□□ 0.44
CHD3-216ENST00000573936 ABCA8O94911 1581 aa17.81■□□□□ 0.44
CHD3-216ENST00000573936 FHOD3Q2V2M9 1422 aa17.81■□□□□ 0.44
CHD3-216ENST00000573936 TEX14Q8IWB6 1497 aa17.8■□□□□ 0.44
CHD3-216ENST00000573936 COL17A1Q9UMD9 1497 aaPredicted RBP17.79■□□□□ 0.44
CHD3-216ENST00000573936 ARHGAP35Q9NRY4 1499 aa17.78■□□□□ 0.44
CHD3-216ENST00000573936 LOC105371045A0A1W2PR82 267 aa17.75■□□□□ 0.43
CHD3-216ENST00000573936 ADGRL1O94910 1474 aa17.75■□□□□ 0.43
CHD3-216ENST00000573936 FMN1Q68DA7 1419 aa17.74■□□□□ 0.43
CHD3-216ENST00000573936 CLIP1P30622 1438 aa17.73■□□□□ 0.43
CHD3-216ENST00000573936 CFAP43Q8NDM7 1665 aa17.73■□□□□ 0.43
CHD3-216ENST00000573936 RAPGEF6Q8TEU7 1601 aa17.72■□□□□ 0.43
CHD3-216ENST00000573936 CD109Q6YHK3 1445 aa17.69■□□□□ 0.42
CHD3-216ENST00000573936 MAGI3Q5TCQ9 1506 aa17.68■□□□□ 0.42
CHD3-216ENST00000573936 KCNH8Q96L42 1107 aa17.68■□□□□ 0.42
CHD3-216ENST00000573936 CEP162Q5TB80 1403 aa17.67■□□□□ 0.42
CHD3-216ENST00000573936 ARID3CA6NKF2 412 aa17.67■□□□□ 0.42
CHD3-216ENST00000573936 ATP10BO94823 1461 aa17.67■□□□□ 0.42
CHD3-216ENST00000573936 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP17.65■□□□□ 0.42
CHD3-216ENST00000573936 HNRNPUL2Q1KMD3 747 aaKnown RBP17.65■□□□□ 0.42
CHD3-216ENST00000573936 NUP153P49790 1475 aaKnown RBP17.64■□□□□ 0.41
CHD3-216ENST00000573936 ATP1B4Q9UN42 357 aaPredicted RBP17.64■□□□□ 0.41
CHD3-216ENST00000573936 HECW1Q76N89 1606 aa17.6■□□□□ 0.41
CHD3-216ENST00000573936 HECW2Q9P2P5 1572 aa17.59■□□□□ 0.41
CHD3-216ENST00000573936 CASKIN1Q8WXD9 1431 aa17.59■□□□□ 0.41
CHD3-216ENST00000573936 PLEKHD1A6NEE1 506 aa17.59■□□□□ 0.41
CHD3-216ENST00000573936 ABCA9Q8IUA7 1624 aa17.58■□□□□ 0.4
CHD3-216ENST00000573936 CDK11AQ9UQ88 783 aaPredicted RBP17.57■□□□□ 0.4
CHD3-216ENST00000573936 ARAP3Q8WWN8 1544 aa17.54■□□□□ 0.4
CHD3-216ENST00000573936 FYCO1Q9BQS8 1478 aa17.54■□□□□ 0.4
CHD3-216ENST00000573936 CCDC18Q5T9S5 1454 aa17.52■□□□□ 0.4
CHD3-216ENST00000573936 PCF11O94913 1555 aaKnown RBP17.52■□□□□ 0.39
CHD3-216ENST00000573936 CDK13Q14004 1512 aaKnown RBP17.52■□□□□ 0.39
CHD3-216ENST00000573936 NEO1Q92859 1461 aa17.47■□□□□ 0.39
CHD3-216ENST00000573936 FRMPD1Q5SYB0 1578 aa17.47■□□□□ 0.39
CHD3-216ENST00000573936 VPS8Q8N3P4 1428 aa17.47■□□□□ 0.39
CHD3-216ENST00000573936 PHLDB1Q86UU1 1377 aa17.45■□□□□ 0.38
CHD3-216ENST00000573936 TROQ12816 1431 aaPredicted RBP17.44■□□□□ 0.38
CHD3-216ENST00000573936 RAPGEF3O95398 923 aa17.43■□□□□ 0.38
CHD3-216ENST00000573936 TTC37Q6PGP7 1564 aa17.42■□□□□ 0.38
CHD3-216ENST00000573936 FBXO41Q8TF61 875 aa17.42■□□□□ 0.38
CHD3-216ENST00000573936 LRRIQ1Q96JM4 1722 aa17.41■□□□□ 0.38
CHD3-216ENST00000573936 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP17.39■□□□□ 0.37
CHD3-216ENST00000573936 ARHGEF40Q8TER5 1519 aa17.39■□□□□ 0.37
CHD3-216ENST00000573936 CFAP74Q9C0B2 1584 aa17.39■□□□□ 0.37
CHD3-216ENST00000573936 ARID4BQ4LE39 1312 aaPredicted RBP17.38■□□□□ 0.37
CHD3-216ENST00000573936 ADAMTSL3P82987 1691 aa17.38■□□□□ 0.37
CHD3-216ENST00000573936 RICTORQ6R327 1708 aa17.37■□□□□ 0.37
CHD3-216ENST00000573936 MTUS2Q5JR59 1369 aa17.37■□□□□ 0.37
CHD3-216ENST00000573936 FANCAO15360 1455 aa17.37■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 70 ms