RNA–Protein interactions for RNA: ENST00000572665.1

CIITA-208, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 5

Gene CIITA, Length 560 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-208ENST00000572665 REM2Q8IYK8 340 aaPredicted RBP17.64■□□□□ 0.41
CIITA-208ENST00000572665 DNAJC5Q9H3Z4 198 aa17.61■□□□□ 0.41
CIITA-208ENST00000572665 PLEKHG5O94827 1062 aa17.59■□□□□ 0.41
CIITA-208ENST00000572665 PKD2Q13563 968 aa17.58■□□□□ 0.4
CIITA-208ENST00000572665 MROH2BQ7Z745 1585 aa17.57■□□□□ 0.4
CIITA-208ENST00000572665 LAMC3Q9Y6N6 1575 aa17.56■□□□□ 0.4
CIITA-208ENST00000572665 CLEC11AQ9Y240 323 aa17.55■□□□□ 0.4
CIITA-208ENST00000572665 ZBTB47Q9UFB7 747 aaPredicted RBP17.54■□□□□ 0.4
CIITA-208ENST00000572665 NESP48681 1621 aa17.54■□□□□ 0.4
CIITA-208ENST00000572665 PRR29P0C7W0 189 aa17.47■□□□□ 0.39
CIITA-208ENST00000572665 PDS5BQ9NTI5 1447 aa17.46■□□□□ 0.39
CIITA-208ENST00000572665 PITPNM1O00562 1244 aa17.43■□□□□ 0.38
CIITA-208ENST00000572665 SLC24A1O60721 1099 aa17.43■□□□□ 0.38
CIITA-208ENST00000572665 THOC2Q8NI27 1593 aaKnown RBP17.42■□□□□ 0.38
CIITA-208ENST00000572665 CREBZFQ9NS37 354 aa17.4■□□□□ 0.38
CIITA-208ENST00000572665 KIF21AQ7Z4S6 1674 aa17.39■□□□□ 0.37
CIITA-208ENST00000572665 WIZO95785 1651 aa17.39■□□□□ 0.37
CIITA-208ENST00000572665 CADPSQ9ULU8 1353 aa17.37■□□□□ 0.37
CIITA-208ENST00000572665 ECM2O94769 699 aaPredicted RBP17.36■□□□□ 0.37
CIITA-208ENST00000572665 CIZ1Q9ULV3 898 aaPredicted RBP17.3■□□□□ 0.36
CIITA-208ENST00000572665 MNX1P50219 401 aaPredicted RBP17.29■□□□□ 0.36
CIITA-208ENST00000572665 NUBP1P53384 320 aa17.27■□□□□ 0.36
CIITA-208ENST00000572665 MRC2Q9UBG0 1479 aa17.26■□□□□ 0.35
CIITA-208ENST00000572665 RSF1Q96T23 1441 aaPredicted RBP17.22■□□□□ 0.35
CIITA-208ENST00000572665 WDR62O43379 1518 aa17.21■□□□□ 0.35
CIITA-208ENST00000572665 CEP164Q9UPV0 1460 aa17.21■□□□□ 0.35
CIITA-208ENST00000572665 TOP2AP11388 1531 aaKnown RBP17.21■□□□□ 0.34
CIITA-208ENST00000572665 RGL2O15211 777 aa17.2■□□□□ 0.34
CIITA-208ENST00000572665 GSE1Q14687 1217 aa17.19■□□□□ 0.34
CIITA-208ENST00000572665 TRIM41Q8WV44 630 aa17.17■□□□□ 0.34
CIITA-208ENST00000572665 CFTRP13569 1480 aa17.17■□□□□ 0.34
CIITA-208ENST00000572665 FANCD2Q9BXW9 1451 aa17.17■□□□□ 0.34
CIITA-208ENST00000572665 DCAF8Q5TAQ9 597 aa17.11■□□□□ 0.33
CIITA-208ENST00000572665 FAM212AQ96EL1 285 aa17.1■□□□□ 0.33
CIITA-208ENST00000572665 PRDM2Q13029 1718 aa17.1■□□□□ 0.33
CIITA-208ENST00000572665 NPM1P06748 294 aaKnown RBP eCLIP17.09■□□□□ 0.33
CIITA-208ENST00000572665 CHADLQ6NUI6 762 aa17.09■□□□□ 0.33
CIITA-208ENST00000572665 RASEFQ8IZ41 740 aa17.08■□□□□ 0.32
CIITA-208ENST00000572665 PLCB2Q00722 1185 aa17.06■□□□□ 0.32
CIITA-208ENST00000572665 FXR2P51116 673 aaKnown RBP eCLIP17.01■□□□□ 0.31
CIITA-208ENST00000572665 FARP1Q9Y4F1 1045 aaPredicted RBP16.99■□□□□ 0.31
CIITA-208ENST00000572665 PRKAR2AP13861 404 aaKnown RBP16.98■□□□□ 0.31
CIITA-208ENST00000572665 RNF25Q96BH1 459 aaPredicted RBP16.98■□□□□ 0.31
CIITA-208ENST00000572665 URB2Q14146 1524 aaKnown RBP16.97■□□□□ 0.31
CIITA-208ENST00000572665 CHRDL2Q6WN34 429 aa16.97■□□□□ 0.31
CIITA-208ENST00000572665 CCDC88BA6NC98 1476 aa16.97■□□□□ 0.31
CIITA-208ENST00000572665 BBXQ8WY36 941 aaPredicted RBP16.96■□□□□ 0.31
CIITA-208ENST00000572665 CHRM1P11229 460 aaPredicted RBP16.92■□□□□ 0.3
CIITA-208ENST00000572665 ABCC8Q09428 1581 aa16.91■□□□□ 0.3
CIITA-208ENST00000572665 CHGAP10645 457 aaKnown RBP16.89■□□□□ 0.29
CIITA-208ENST00000572665 RIOK3O14730 519 aaKnown RBP16.88■□□□□ 0.29
CIITA-208ENST00000572665 PIP4P2Q8N4L2 257 aa16.88■□□□□ 0.29
CIITA-208ENST00000572665 ZBTB4Q9P1Z0 1013 aaPredicted RBP16.88■□□□□ 0.29
CIITA-208ENST00000572665 IFT140Q96RY7 1462 aa16.87■□□□□ 0.29
CIITA-208ENST00000572665 PYGBP11216 843 aa16.84■□□□□ 0.29
CIITA-208ENST00000572665 HS6ST3Q8IZP7 471 aa16.83■□□□□ 0.28
CIITA-208ENST00000572665 TOPBP1Q92547 1522 aa16.83■□□□□ 0.28
CIITA-208ENST00000572665 TSPYL2Q9H2G4 693 aaPredicted RBP16.83■□□□□ 0.28
CIITA-208ENST00000572665 TAOK2Q9UL54 1235 aa16.81■□□□□ 0.28
CIITA-208ENST00000572665 DNMBPQ6XZF7 1577 aa16.81■□□□□ 0.28
CIITA-208ENST00000572665 HAP1P54257 671 aaPredicted RBP16.79■□□□□ 0.28
CIITA-208ENST00000572665 VGFO15240 615 aaPredicted RBP16.77■□□□□ 0.28
CIITA-208ENST00000572665 PAXIP1Q6ZW49 1069 aaPredicted RBP16.76■□□□□ 0.27
CIITA-208ENST00000572665 ZNF608Q9ULD9 1512 aaPredicted RBP16.74■□□□□ 0.27
CIITA-208ENST00000572665 EIF4G3O43432 1585 aaKnown RBP16.72■□□□□ 0.27
CIITA-208ENST00000572665 CFAP44Q96MT7 982 aa16.72■□□□□ 0.27
CIITA-208ENST00000572665 CCDC61Q9Y6R9 512 aa16.71■□□□□ 0.27
CIITA-208ENST00000572665 SPRYD3Q8NCJ5 442 aa16.69■□□□□ 0.26
CIITA-208ENST00000572665 SGIP1Q9BQI5 828 aa16.69■□□□□ 0.26
CIITA-208ENST00000572665 TARBP1Q13395 1621 aaKnown RBP16.67■□□□□ 0.26
CIITA-208ENST00000572665 STK25O00506 426 aa16.67■□□□□ 0.26
CIITA-208ENST00000572665 PAK3O75914 559 aaPredicted RBP16.66■□□□□ 0.26
CIITA-208ENST00000572665 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP16.65■□□□□ 0.26
CIITA-208ENST00000572665 ZFP91Q96JP5 570 aaPredicted RBP16.65■□□□□ 0.26
CIITA-208ENST00000572665 POLA1P09884 1462 aaPredicted RBP16.65■□□□□ 0.26
CIITA-208ENST00000572665 ZNF467Q7Z7K2 595 aaPredicted RBP16.63■□□□□ 0.25
CIITA-208ENST00000572665 WDR97A6NE52 1622 aa16.63■□□□□ 0.25
CIITA-208ENST00000572665 RIMBP3CA6NJZ7 1639 aa16.63■□□□□ 0.25
CIITA-208ENST00000572665 RIMBP3BA6NNM3 1639 aa16.63■□□□□ 0.25
CIITA-208ENST00000572665 RIMBP3Q9UFD9 1639 aa16.63■□□□□ 0.25
CIITA-208ENST00000572665 AQRO60306 1485 aaKnown RBP eCLIP16.61■□□□□ 0.25
CIITA-208ENST00000572665 CHD1O14646 1710 aa16.61■□□□□ 0.25
CIITA-208ENST00000572665 SOGA1O94964 1423 aa16.61■□□□□ 0.25
CIITA-208ENST00000572665 BCL11BQ9C0K0 894 aaPredicted RBP16.6■□□□□ 0.25
CIITA-208ENST00000572665 NKX1-1Q15270 411 aaPredicted RBP16.59■□□□□ 0.25
CIITA-208ENST00000572665 ARHGEF11O15085 1522 aa16.57■□□□□ 0.24
CIITA-208ENST00000572665 STK24Q9Y6E0 443 aa16.57■□□□□ 0.24
CIITA-208ENST00000572665 FGD5Q6ZNL6 1462 aa16.56■□□□□ 0.24
CIITA-208ENST00000572665 RAD54L2Q9Y4B4 1467 aa16.55■□□□□ 0.24
CIITA-208ENST00000572665 VSIG10Q8N0Z9 540 aa16.55■□□□□ 0.24
CIITA-208ENST00000572665 PCDHB8Q9UN66 801 aa16.55■□□□□ 0.24
CIITA-208ENST00000572665 PCDHB13Q9Y5F0 798 aa16.55■□□□□ 0.24
CIITA-208ENST00000572665 ZNF579Q8NAF0 562 aaKnown RBP16.54■□□□□ 0.24
CIITA-208ENST00000572665 CD44P16070 742 aaKnown RBP16.53■□□□□ 0.24
CIITA-208ENST00000572665 TDRD9Q8NDG6 1382 aaKnown RBP16.51■□□□□ 0.23
CIITA-208ENST00000572665 CUX1P39880 1505 aa16.51■□□□□ 0.23
CIITA-208ENST00000572665 PDAP1Q13442 181 aaKnown RBP16.51■□□□□ 0.23
CIITA-208ENST00000572665 KIF12Q96FN5 646 aa16.51■□□□□ 0.23
CIITA-208ENST00000572665 ZRANB1Q9UGI0 708 aa16.51■□□□□ 0.23
CIITA-208ENST00000572665 MAGI1Q96QZ7 1491 aaPredicted RBP16.49■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 39.9 ms