RNA–Protein interactions for RNA: ENST00000570874.1

SMG6-208, Transcript of SMG6, nonsense mediated mRNA decay factor, humanhuman

TSL 4

Gene SMG6, Length 533 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMG6-208ENST00000570874 MROH2BQ7Z745 1585 aa5.84□□□□□ -1.47
SMG6-208ENST00000570874 EIF5BO60841 1220 aaKnown RBP5.83□□□□□ -1.48
SMG6-208ENST00000570874 HAP1P54257 671 aaPredicted RBP5.83□□□□□ -1.48
SMG6-208ENST00000570874 SMARCA4P51532 1647 aa5.82□□□□□ -1.48
SMG6-208ENST00000570874 RSF1Q96T23 1441 aaPredicted RBP5.82□□□□□ -1.48
SMG6-208ENST00000570874 PABPN1Q86U42 306 aaKnown RBP eCLIP5.81□□□□□ -1.48
SMG6-208ENST00000570874 OTUD5Q96G74 571 aa5.81□□□□□ -1.48
SMG6-208ENST00000570874 ZBTB12Q9Y330 459 aaPredicted RBP5.81□□□□□ -1.48
SMG6-208ENST00000570874 KLHL34Q8N239 644 aa5.8□□□□□ -1.48
SMG6-208ENST00000570874 BAZ1AQ9NRL2 1556 aaPredicted RBP5.79□□□□□ -1.48
SMG6-208ENST00000570874 NPM2Q86SE8 214 aaKnown RBP5.76□□□□□ -1.49
SMG6-208ENST00000570874 VSIG10Q8N0Z9 540 aa5.76□□□□□ -1.49
SMG6-208ENST00000570874 FBXO3Q9UK99 471 aa5.76□□□□□ -1.49
SMG6-208ENST00000570874 TMEM132AQ24JP5 1023 aa5.74□□□□□ -1.49
SMG6-208ENST00000570874 C14orf37Q86TY3 774 aa5.72□□□□□ -1.49
SMG6-208ENST00000570874 TOP2AP11388 1531 aaKnown RBP5.72□□□□□ -1.49
SMG6-208ENST00000570874 DCBLD2Q96PD2 775 aa5.71□□□□□ -1.5
SMG6-208ENST00000570874 SMARCA2P51531 1590 aa5.71□□□□□ -1.5
SMG6-208ENST00000570874 EIF4G1Q04637 1599 aaKnown RBP5.71□□□□□ -1.5
SMG6-208ENST00000570874 PEG3Q9GZU2 1588 aa5.7□□□□□ -1.5
SMG6-208ENST00000570874 POTEB2H3BUK9 544 aa5.68□□□□□ -1.5
SMG6-208ENST00000570874 CLEC11AQ9Y240 323 aa5.67□□□□□ -1.5
SMG6-208ENST00000570874 PRDM2Q13029 1718 aa5.65□□□□□ -1.5
SMG6-208ENST00000570874 ATAD2BQ9ULI0 1458 aa5.65□□□□□ -1.5
SMG6-208ENST00000570874 CLCN6P51797 869 aa5.65□□□□□ -1.5
SMG6-208ENST00000570874 LCE2DQ5TA82 110 aaPredicted RBP5.65□□□□□ -1.5
SMG6-208ENST00000570874 CHADLQ6NUI6 762 aa5.65□□□□□ -1.5
SMG6-208ENST00000570874 CCDC88BA6NC98 1476 aa5.64□□□□□ -1.51
SMG6-208ENST00000570874 CC2D2AQ9P2K1 1620 aa5.64□□□□□ -1.51
SMG6-208ENST00000570874 CD44P16070 742 aaKnown RBP5.64□□□□□ -1.51
SMG6-208ENST00000570874 SPDYE1Q8NFV5 336 aaPredicted RBP5.64□□□□□ -1.51
SMG6-208ENST00000570874 ZBTB22O15209 634 aa5.63□□□□□ -1.51
SMG6-208ENST00000570874 BAZ1BQ9UIG0 1483 aaKnown RBP5.63□□□□□ -1.51
SMG6-208ENST00000570874 MYCNP04198 464 aaPredicted RBP5.62□□□□□ -1.51
SMG6-208ENST00000570874 FKBP8Q14318 412 aa5.62□□□□□ -1.51
SMG6-208ENST00000570874 ABCC8Q09428 1581 aa5.62□□□□□ -1.51
SMG6-208ENST00000570874 HMGXB3Q12766 1538 aa5.6□□□□□ -1.51
SMG6-208ENST00000570874 SPDYE2BA6NHP3 402 aa5.57□□□□□ -1.52
SMG6-208ENST00000570874 SPDYE6P0CI01 402 aa5.57□□□□□ -1.52
SMG6-208ENST00000570874 SPDYE2Q495Y8 402 aa5.57□□□□□ -1.52
SMG6-208ENST00000570874 TRIM26Q12899 539 aaPredicted RBP5.56□□□□□ -1.52
SMG6-208ENST00000570874 FAM163AQ96GL9 167 aaPredicted RBP5.56□□□□□ -1.52
SMG6-208ENST00000570874 NCAPD3P42695 1498 aa5.55□□□□□ -1.52
SMG6-208ENST00000570874 SYNJ1O43426 1573 aa5.55□□□□□ -1.52
SMG6-208ENST00000570874 CDAN1Q8IWY9 1227 aa5.54□□□□□ -1.52
SMG6-208ENST00000570874 ATF5Q9Y2D1 282 aaPredicted RBP5.54□□□□□ -1.52
SMG6-208ENST00000570874 KDM2AQ9Y2K7 1162 aa5.54□□□□□ -1.52
SMG6-208ENST00000570874 ZNF579Q8NAF0 562 aaKnown RBP5.52□□□□□ -1.53
SMG6-208ENST00000570874 BIVM-ERCC5R4GMW8 1640 aa5.52□□□□□ -1.53
SMG6-208ENST00000570874 KIF21AQ7Z4S6 1674 aa5.51□□□□□ -1.53
SMG6-208ENST00000570874 GALR2O43603 387 aaPredicted RBP5.5□□□□□ -1.53
SMG6-208ENST00000570874 TRIM41Q8WV44 630 aa5.5□□□□□ -1.53
SMG6-208ENST00000570874 LOC105371045A0A1W2PR82 267 aa5.49□□□□□ -1.53
SMG6-208ENST00000570874 POTEJP0CG39 1038 aa5.49□□□□□ -1.53
SMG6-208ENST00000570874 MMRN1Q13201 1228 aa5.49□□□□□ -1.53
SMG6-208ENST00000570874 FBLN2P98095 1184 aa5.48□□□□□ -1.53
SMG6-208ENST00000570874 FAM9AQ8IZU1 332 aaPredicted RBP5.48□□□□□ -1.53
SMG6-208ENST00000570874 CDK11AQ9UQ88 783 aaPredicted RBP5.48□□□□□ -1.53
SMG6-208ENST00000570874 FARP1Q9Y4F1 1045 aaPredicted RBP5.48□□□□□ -1.53
SMG6-208ENST00000570874 NESP48681 1621 aa5.48□□□□□ -1.53
SMG6-208ENST00000570874 TOP2BQ02880 1626 aa5.48□□□□□ -1.53
SMG6-208ENST00000570874 RUSC2Q8N2Y8 1516 aa5.48□□□□□ -1.53
SMG6-208ENST00000570874 HMGB1P09429 215 aaKnown RBP5.47□□□□□ -1.53
SMG6-208ENST00000570874 UBTFP17480 764 aaKnown RBP5.47□□□□□ -1.53
SMG6-208ENST00000570874 MAMSTRQ6ZN01 415 aa5.47□□□□□ -1.53
SMG6-208ENST00000570874 CUX1P39880 1505 aa5.47□□□□□ -1.53
SMG6-208ENST00000570874 PLEKHG5O94827 1062 aa5.46□□□□□ -1.54
SMG6-208ENST00000570874 PRR29P0C7W0 189 aa5.46□□□□□ -1.54
SMG6-208ENST00000570874 NBR1Q14596 966 aa5.46□□□□□ -1.54
SMG6-208ENST00000570874 WRNQ14191 1432 aaPredicted RBP eCLIP5.46□□□□□ -1.54
SMG6-208ENST00000570874 CFTRP13569 1480 aa5.45□□□□□ -1.54
SMG6-208ENST00000570874 CDK11BP21127 795 aaKnown RBP5.45□□□□□ -1.54
SMG6-208ENST00000570874 HRCP23327 699 aa5.45□□□□□ -1.54
SMG6-208ENST00000570874 SOGA1O94964 1423 aa5.44□□□□□ -1.54
SMG6-208ENST00000570874 FOXD4L1Q9NU39 408 aa5.44□□□□□ -1.54
SMG6-208ENST00000570874 ZRANB1Q9UGI0 708 aa5.44□□□□□ -1.54
SMG6-208ENST00000570874 METRNQ9UJH8 293 aa5.44□□□□□ -1.54
SMG6-208ENST00000570874 SSUH2Q9Y2M2 353 aa5.43□□□□□ -1.54
SMG6-208ENST00000570874 LAMC3Q9Y6N6 1575 aa5.42□□□□□ -1.54
SMG6-208ENST00000570874 WDR97A6NE52 1622 aa5.42□□□□□ -1.54
SMG6-208ENST00000570874 SPNS2Q8IVW8 549 aa5.42□□□□□ -1.54
SMG6-208ENST00000570874 SCUBE2Q9NQ36 999 aa5.42□□□□□ -1.54
SMG6-208ENST00000570874 ZBTB4Q9P1Z0 1013 aaPredicted RBP5.42□□□□□ -1.54
SMG6-208ENST00000570874 CCDC9Q9Y3X0 531 aaKnown RBP5.42□□□□□ -1.54
SMG6-208ENST00000570874 CADPSQ9ULU8 1353 aa5.41□□□□□ -1.54
SMG6-208ENST00000570874 FANCD2Q9BXW9 1451 aa5.4□□□□□ -1.54
SMG6-208ENST00000570874 DNMBPQ6XZF7 1577 aa5.39□□□□□ -1.55
SMG6-208ENST00000570874 KIF21BO75037 1637 aa5.39□□□□□ -1.55
SMG6-208ENST00000570874 PDIA4P13667 645 aaKnown RBP5.39□□□□□ -1.55
SMG6-208ENST00000570874 HSP90B1P14625 803 aaKnown RBP5.39□□□□□ -1.55
SMG6-208ENST00000570874 ZNF692Q9BU19 519 aaPredicted RBP5.38□□□□□ -1.55
SMG6-208ENST00000570874 FGD5Q6ZNL6 1462 aa5.38□□□□□ -1.55
SMG6-208ENST00000570874 URB2Q14146 1524 aaKnown RBP5.38□□□□□ -1.55
SMG6-208ENST00000570874 TOPBP1Q92547 1522 aa5.37□□□□□ -1.55
SMG6-208ENST00000570874 PBRM1Q86U86 1689 aa5.37□□□□□ -1.55
SMG6-208ENST00000570874 C7P10643 843 aa5.36□□□□□ -1.55
SMG6-208ENST00000570874 SLC39A7Q92504 469 aa5.36□□□□□ -1.55
SMG6-208ENST00000570874 CEP164Q9UPV0 1460 aa5.36□□□□□ -1.55
SMG6-208ENST00000570874 RAD54L2Q9Y4B4 1467 aa5.35□□□□□ -1.55
SMG6-208ENST00000570874 PAXIP1Q6ZW49 1069 aaPredicted RBP5.35□□□□□ -1.55
Retrieved 100 of 20,778 RNA–protein pairs in 10.2 ms