RNA–Protein interactions for RNA: ENST00000570296.1

CLK3-227, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 916 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-227ENST00000570296 KDM6BO15054 1643 aa33.46■■■□□ 2.95
CLK3-227ENST00000570296 WRNQ14191 1432 aaPredicted RBP eCLIP33.42■■■□□ 2.94
CLK3-227ENST00000570296 NPM1P06748 294 aaKnown RBP eCLIP33.39■■■□□ 2.94
CLK3-227ENST00000570296 ERICH3Q5RHP9 1530 aa33.36■■■□□ 2.93
CLK3-227ENST00000570296 JPH4Q96JJ6 628 aa33.34■■■□□ 2.93
CLK3-227ENST00000570296 ADCY10Q96PN6 1610 aa33.28■■■□□ 2.92
CLK3-227ENST00000570296 TSPOAP1O95153 1857 aa33.26■■■□□ 2.91
CLK3-227ENST00000570296 RUSC2Q8N2Y8 1516 aa33.22■■■□□ 2.91
CLK3-227ENST00000570296 BIVM-ERCC5R4GMW8 1640 aa33.21■■■□□ 2.91
CLK3-227ENST00000570296 TOP2BQ02880 1626 aa33.2■■■□□ 2.9
CLK3-227ENST00000570296 ADGRL1O94910 1474 aa33.07■■■□□ 2.88
CLK3-227ENST00000570296 HECW2Q9P2P5 1572 aa33■■■□□ 2.87
CLK3-227ENST00000570296 PPRC1Q5VV67 1664 aaKnown RBP32.94■■■□□ 2.86
CLK3-227ENST00000570296 KIAA0586Q9BVV6 1533 aa32.92■■■□□ 2.86
CLK3-227ENST00000570296 GLI2P10070 1586 aa32.9■■■□□ 2.86
CLK3-227ENST00000570296 PLB1Q6P1J6 1458 aa32.82■■■□□ 2.84
CLK3-227ENST00000570296 ABCC2Q92887 1545 aa32.82■■■□□ 2.84
CLK3-227ENST00000570296 PTPRGP23470 1445 aa32.8■■■□□ 2.84
CLK3-227ENST00000570296 ASXL2Q76L83 1435 aa32.79■■■□□ 2.84
CLK3-227ENST00000570296 COL17A1Q9UMD9 1497 aaPredicted RBP32.74■■■□□ 2.83
CLK3-227ENST00000570296 CUL7Q14999 1698 aa32.67■■■□□ 2.82
CLK3-227ENST00000570296 TNIKQ9UKE5 1360 aa32.67■■■□□ 2.82
CLK3-227ENST00000570296 TEX14Q8IWB6 1497 aa32.67■■■□□ 2.82
CLK3-227ENST00000570296 MAP3K4Q9Y6R4 1608 aa32.66■■■□□ 2.82
CLK3-227ENST00000570296 FBXO41Q8TF61 875 aa32.66■■■□□ 2.82
CLK3-227ENST00000570296 UHRF1BP1LA0JNW5 1464 aa32.65■■■□□ 2.82
CLK3-227ENST00000570296 CARMIL2Q6F5E8 1435 aa32.63■■■□□ 2.81
CLK3-227ENST00000570296 IGF1RP08069 1367 aa32.6■■■□□ 2.81
CLK3-227ENST00000570296 EPRSP07814 1512 aaKnown RBP32.6■■■□□ 2.81
CLK3-227ENST00000570296 TTBK1Q5TCY1 1321 aaPredicted RBP32.58■■■□□ 2.81
CLK3-227ENST00000570296 UACAQ9BZF9 1416 aa32.53■■■□□ 2.8
CLK3-227ENST00000570296 KDM5BQ9UGL1 1544 aa32.5■■■□□ 2.79
CLK3-227ENST00000570296 KIF27Q86VH2 1401 aa32.49■■■□□ 2.79
CLK3-227ENST00000570296 SUPT5HO00267 1087 aaKnown RBP32.47■■■□□ 2.79
CLK3-227ENST00000570296 IQGAP2Q13576 1575 aa32.45■■■□□ 2.78
CLK3-227ENST00000570296 ZCCHC11Q5TAX3 1644 aaKnown RBP32.41■■■□□ 2.78
CLK3-227ENST00000570296 DISP1Q96F81 1524 aa32.36■■■□□ 2.77
CLK3-227ENST00000570296 CARMIL1Q5VZK9 1371 aa32.35■■■□□ 2.77
CLK3-227ENST00000570296 WDR7Q9Y4E6 1490 aa32.3■■■□□ 2.76
CLK3-227ENST00000570296 MAGI3Q5TCQ9 1506 aa32.28■■■□□ 2.76
CLK3-227ENST00000570296 KIF21BO75037 1637 aa32.27■■■□□ 2.76
CLK3-227ENST00000570296 CFAP43Q8NDM7 1665 aa32.25■■■□□ 2.75
CLK3-227ENST00000570296 CD109Q6YHK3 1445 aa32.21■■■□□ 2.75
CLK3-227ENST00000570296 UGGT2Q9NYU1 1516 aa32.21■■■□□ 2.75
CLK3-227ENST00000570296 KIAA0556O60303 1618 aa32.16■■■□□ 2.74
CLK3-227ENST00000570296 PTPRMP28827 1452 aa32.13■■■□□ 2.73
CLK3-227ENST00000570296 LMTK3Q96Q04 1460 aa32.12■■■□□ 2.73
CLK3-227ENST00000570296 ADAMTSL3P82987 1691 aa32.11■■■□□ 2.73
CLK3-227ENST00000570296 ARAP3Q8WWN8 1544 aa32.07■■■□□ 2.72
CLK3-227ENST00000570296 PCF11O94913 1555 aaKnown RBP32.04■■■□□ 2.72
CLK3-227ENST00000570296 KCNH8Q96L42 1107 aa32.02■■■□□ 2.72
CLK3-227ENST00000570296 RAPGEF2Q9Y4G8 1499 aa31.96■■■□□ 2.71
CLK3-227ENST00000570296 ABCA8O94911 1581 aa31.94■■■□□ 2.7
CLK3-227ENST00000570296 BCORL1Q5H9F3 1711 aa31.92■■■□□ 2.7
CLK3-227ENST00000570296 PHLDB1Q86UU1 1377 aa31.9■■■□□ 2.7
CLK3-227ENST00000570296 MADDQ8WXG6 1647 aa31.88■■■□□ 2.69
CLK3-227ENST00000570296 GOLGA3Q08378 1498 aa31.85■■■□□ 2.69
CLK3-227ENST00000570296 CTTNBP2Q8WZ74 1663 aa31.81■■■□□ 2.68
CLK3-227ENST00000570296 SOCS7O14512 581 aa31.79■■■□□ 2.68
CLK3-227ENST00000570296 ABCA9Q8IUA7 1624 aa31.78■■■□□ 2.68
CLK3-227ENST00000570296 CERKQ8TCT0 537 aa31.76■■■□□ 2.67
CLK3-227ENST00000570296 ARID4BQ4LE39 1312 aaPredicted RBP31.75■■■□□ 2.67
CLK3-227ENST00000570296 RAPGEF3O95398 923 aa31.74■■■□□ 2.67
CLK3-227ENST00000570296 RIMS1Q86UR5 1692 aaKnown RBP31.73■■■□□ 2.67
CLK3-227ENST00000570296 NEO1Q92859 1461 aa31.73■■■□□ 2.67
CLK3-227ENST00000570296 ILDR2Q71H61 639 aa31.71■■■□□ 2.67
CLK3-227ENST00000570296 FRMPD1Q5SYB0 1578 aa31.71■■■□□ 2.67
CLK3-227ENST00000570296 DISP3Q9P2K9 1392 aa31.7■■■□□ 2.67
CLK3-227ENST00000570296 HSPA2P54652 639 aa31.67■■■□□ 2.66
CLK3-227ENST00000570296 ARHGEF40Q8TER5 1519 aa31.65■■■□□ 2.66
CLK3-227ENST00000570296 ATP10BO94823 1461 aa31.64■■■□□ 2.66
CLK3-227ENST00000570296 FAM9AQ8IZU1 332 aaPredicted RBP31.56■■■□□ 2.64
CLK3-227ENST00000570296 ARID3CA6NKF2 412 aa31.54■■■□□ 2.64
CLK3-227ENST00000570296 POGZQ7Z3K3 1410 aa31.53■■■□□ 2.64
CLK3-227ENST00000570296 RICTORQ6R327 1708 aa31.51■■■□□ 2.63
CLK3-227ENST00000570296 FANCAO15360 1455 aa31.5■■■□□ 2.63
CLK3-227ENST00000570296 DENND4BO75064 1496 aaPredicted RBP31.47■■■□□ 2.63
CLK3-227ENST00000570296 SPATA31D1Q6ZQQ2 1576 aa31.47■■■□□ 2.63
CLK3-227ENST00000570296 FHOD3Q2V2M9 1422 aa31.44■■■□□ 2.62
CLK3-227ENST00000570296 AKNAQ7Z591 1439 aa31.44■■■□□ 2.62
CLK3-227ENST00000570296 PLPPR3Q6T4P5 718 aa31.44■■■□□ 2.62
CLK3-227ENST00000570296 TTC37Q6PGP7 1564 aa31.42■■■□□ 2.62
CLK3-227ENST00000570296 FER1L4A9Z1Z3 1794 aa31.41■■■□□ 2.62
CLK3-227ENST00000570296 ZMYM4Q5VZL5 1548 aa31.4■■■□□ 2.62
CLK3-227ENST00000570296 CFAP74Q9C0B2 1584 aa31.39■■■□□ 2.61
CLK3-227ENST00000570296 SIGLEC1Q9BZZ2 1709 aa31.38■■■□□ 2.61
CLK3-227ENST00000570296 RAPGEF6Q8TEU7 1601 aa31.38■■■□□ 2.61
CLK3-227ENST00000570296 EFCAB5A4FU69 1503 aa31.37■■■□□ 2.61
CLK3-227ENST00000570296 PREX1Q8TCU6 1659 aa31.37■■■□□ 2.61
CLK3-227ENST00000570296 ZFYVE16Q7Z3T8 1539 aa31.36■■■□□ 2.61
CLK3-227ENST00000570296 PRXQ9BXM0 1461 aa31.34■■■□□ 2.61
CLK3-227ENST00000570296 YEATS2Q9ULM3 1422 aa31.33■■■□□ 2.61
CLK3-227ENST00000570296 DMRT2Q9Y5R5 561 aa31.33■■■□□ 2.61
CLK3-227ENST00000570296 MAGI2Q86UL8 1455 aa31.33■■■□□ 2.61
CLK3-227ENST00000570296 P3H3Q8IVL6 736 aa31.31■■■□□ 2.6
CLK3-227ENST00000570296 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP31.3■■■□□ 2.6
CLK3-227ENST00000570296 HNRNPUL2Q1KMD3 747 aaKnown RBP31.3■■■□□ 2.6
CLK3-227ENST00000570296 STRCQ7RTU9 1775 aa31.29■■■□□ 2.6
CLK3-227ENST00000570296 SAMD9Q5K651 1589 aa31.28■■■□□ 2.6
CLK3-227ENST00000570296 MLECQ14165 292 aa31.24■■■□□ 2.59
Retrieved 100 of 20,778 RNA–protein pairs in 46.6 ms