RNA–Protein interactions for RNA: ENST00000569240.5

CNOT1-216, Transcript of CCR4-NOT transcription complex subunit 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene CNOT1, Length 7,660 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CNOT1-216ENST00000569240 MRS2Q9HD23 443 aa9.28□□□□□ -0.92
CNOT1-216ENST00000569240 TCERG1O14776 1098 aaKnown RBP9.28□□□□□ -0.92
CNOT1-216ENST00000569240 MSNP26038 577 aaKnown RBP9.28□□□□□ -0.92
CNOT1-216ENST00000569240 TMC1Q8TDI8 760 aa9.28□□□□□ -0.92
CNOT1-216ENST00000569240 CHMP4BQ9H444 224 aaKnown RBP9.28□□□□□ -0.92
CNOT1-216ENST00000569240 SLC24A1O60721 1099 aa9.27□□□□□ -0.93
CNOT1-216ENST00000569240 HSP90AA2PQ14568 343 aaPredicted RBP9.26□□□□□ -0.93
CNOT1-216ENST00000569240 PTMAP06454 111 aaKnown RBP9.26□□□□□ -0.93
CNOT1-216ENST00000569240 GOLGA6L6A8MZA4 724 aa9.26□□□□□ -0.93
CNOT1-216ENST00000569240 LAS1LQ9Y4W2 734 aaKnown RBP9.26□□□□□ -0.93
CNOT1-216ENST00000569240 MS4A1P11836 297 aa9.25□□□□□ -0.93
CNOT1-216ENST00000569240 IPO9Q96P70 1041 aaKnown RBP9.24□□□□□ -0.93
CNOT1-216ENST00000569240 EIF4G2P78344 907 aaKnown RBP eCLIP9.24□□□□□ -0.936e-11■■■■□ 25.1
CNOT1-216ENST00000569240 DNTTIP2Q5QJE6 756 aaKnown RBP9.23□□□□□ -0.93
CNOT1-216ENST00000569240 FAM9BQ8IZU0 186 aa9.21□□□□□ -0.93
CNOT1-216ENST00000569240 MYH16Q9H6N6 1097 aa9.2□□□□□ -0.94
CNOT1-216ENST00000569240 GOLGA6L3A6NEY3 463 aa9.19□□□□□ -0.94
CNOT1-216ENST00000569240 CNGB1Q14028 1251 aaPredicted RBP9.19□□□□□ -0.94
CNOT1-216ENST00000569240 GBP4Q96PP9 640 aa9.19□□□□□ -0.94
CNOT1-216ENST00000569240 WDR43Q15061 677 aaKnown RBP eCLIP9.18□□□□□ -0.94
CNOT1-216ENST00000569240 CASC1Q6TDU7 716 aa9.17□□□□□ -0.94
CNOT1-216ENST00000569240 KIAA2012Q0VF49 1180 aa9.17□□□□□ -0.94
CNOT1-216ENST00000569240 TNIKQ9UKE5 1360 aa9.17□□□□□ -0.94
CNOT1-216ENST00000569240 PRKCSHP14314 528 aaPredicted RBP9.17□□□□□ -0.94
CNOT1-216ENST00000569240 TNNT3P45378 269 aaPredicted RBP9.16□□□□□ -0.94
CNOT1-216ENST00000569240 PKNOX2Q96KN3 472 aa9.16□□□□□ -0.94
CNOT1-216ENST00000569240 CALRP27797 417 aaKnown RBP9.15□□□□□ -0.94
CNOT1-216ENST00000569240 A0A0U1RQG5 324 aaPredicted RBP9.15□□□□□ -0.94
CNOT1-216ENST00000569240 GOLGA3Q08378 1498 aa9.15□□□□□ -0.95
CNOT1-216ENST00000569240 RTN4Q9NQC3 1192 aaKnown RBP9.14□□□□□ -0.95
CNOT1-216ENST00000569240 SYAP1Q96A49 352 aaPredicted RBP9.14□□□□□ -0.95
CNOT1-216ENST00000569240 ISY1Q9ULR0 285 aaKnown RBP9.14□□□□□ -0.95
CNOT1-216ENST00000569240 GSE1Q14687 1217 aa9.14□□□□□ -0.95
CNOT1-216ENST00000569240 CDCA8Q53HL2 280 aa9.14□□□□□ -0.95
CNOT1-216ENST00000569240 VSIG10Q8N0Z9 540 aa9.14□□□□□ -0.95
CNOT1-216ENST00000569240 ZCCHC6Q5VYS8 1495 aaKnown RBP9.13□□□□□ -0.95
CNOT1-216ENST00000569240 HSCBQ8IWL3 235 aa9.13□□□□□ -0.95
CNOT1-216ENST00000569240 CSPP1Q1MSJ5 1256 aa9.13□□□□□ -0.95
CNOT1-216ENST00000569240 SKOR2Q2VWA4 1001 aaPredicted RBP9.13□□□□□ -0.95
CNOT1-216ENST00000569240 ZRSR1Q15695 479 aaKnown RBP9.13□□□□□ -0.95
CNOT1-216ENST00000569240 SLC4A1APQ9BWU0 796 aaKnown RBP9.13□□□□□ -0.95
CNOT1-216ENST00000569240 CLIP1P30622 1438 aa9.12□□□□□ -0.95
CNOT1-216ENST00000569240 TPM2P07951 284 aa9.12□□□□□ -0.95
CNOT1-216ENST00000569240 DDX11L8A8MPP1 907 aa9.11□□□□□ -0.95
CNOT1-216ENST00000569240 PDE3BQ13370 1112 aa9.11□□□□□ -0.95
CNOT1-216ENST00000569240 TAF3Q5VWG9 929 aa9.11□□□□□ -0.95
CNOT1-216ENST00000569240 PDZRN4Q6ZMN7 1036 aaPredicted RBP9.1□□□□□ -0.95
CNOT1-216ENST00000569240 CEP162Q5TB80 1403 aa9.09□□□□□ -0.95
CNOT1-216ENST00000569240 RSF1Q96T23 1441 aaPredicted RBP9.08□□□□□ -0.96
CNOT1-216ENST00000569240 RRP9O43818 475 aaKnown RBP9.08□□□□□ -0.96
CNOT1-216ENST00000569240 FAM43AQ8N2R8 423 aa9.08□□□□□ -0.96
CNOT1-216ENST00000569240 GOLGA6L1Q8N7Z2 621 aa9.07□□□□□ -0.96
CNOT1-216ENST00000569240 PHLDB1Q86UU1 1377 aa9.07□□□□□ -0.96
CNOT1-216ENST00000569240 HSP90AB1P08238 724 aaKnown RBP9.07□□□□□ -0.96
CNOT1-216ENST00000569240 PHF14O94880 888 aa9.06□□□□□ -0.96
CNOT1-216ENST00000569240 UBE2Q2Q8WVN8 375 aa9.06□□□□□ -0.96
CNOT1-216ENST00000569240 MYO15BQ96JP2 1530 aa9.05□□□□□ -0.96
CNOT1-216ENST00000569240 SETQ01105 290 aaPredicted RBP9.05□□□□□ -0.96
CNOT1-216ENST00000569240 ARXQ96QS3 562 aa9.05□□□□□ -0.96
CNOT1-216ENST00000569240 CEP164Q9UPV0 1460 aa9.05□□□□□ -0.96
CNOT1-216ENST00000569240 HTATSF1O43719 755 aaKnown RBP9.05□□□□□ -0.96
CNOT1-216ENST00000569240 PODXL2Q9NZ53 605 aa9.05□□□□□ -0.96
CNOT1-216ENST00000569240 CCDC66A2RUB6 948 aa9.04□□□□□ -0.96
CNOT1-216ENST00000569240 HAP1P54257 671 aaPredicted RBP9.04□□□□□ -0.96
CNOT1-216ENST00000569240 IRX6P78412 446 aaPredicted RBP9.04□□□□□ -0.96
CNOT1-216ENST00000569240 AAMPQ13685 434 aa9.02□□□□□ -0.97
CNOT1-216ENST00000569240 CFAP53Q96M91 514 aa9.01□□□□□ -0.97
CNOT1-216ENST00000569240 B4GALNT3Q6L9W6 998 aa9.01□□□□□ -0.97
CNOT1-216ENST00000569240 MCCP23508 829 aa9.01□□□□□ -0.97
CNOT1-216ENST00000569240 TSPYL1Q9H0U9 437 aa9.01□□□□□ -0.97
CNOT1-216ENST00000569240 NOM1Q5C9Z4 860 aaKnown RBP9.01□□□□□ -0.97
CNOT1-216ENST00000569240 GPS2Q13227 327 aa9.01□□□□□ -0.97
CNOT1-216ENST00000569240 ZBTB4Q9P1Z0 1013 aaPredicted RBP9□□□□□ -0.97
CNOT1-216ENST00000569240 NUDCQ9Y266 331 aa9□□□□□ -0.97
CNOT1-216ENST00000569240 ROCK2O75116 1388 aaKnown RBP9□□□□□ -0.97
CNOT1-216ENST00000569240 NGEFQ8N5V2 710 aa9□□□□□ -0.97
CNOT1-216ENST00000569240 MAPK8IP3Q9UPT6 1336 aa8.99□□□□□ -0.97
CNOT1-216ENST00000569240 TEX35Q5T0J7 233 aa8.99□□□□□ -0.97
CNOT1-216ENST00000569240 TPM3P06753 285 aa8.99□□□□□ -0.97
CNOT1-216ENST00000569240 HMGN5P82970 282 aaKnown RBP8.99□□□□□ -0.97
CNOT1-216ENST00000569240 WRNQ14191 1432 aaPredicted RBP eCLIP8.99□□□□□ -0.97
CNOT1-216ENST00000569240 PMFBP1Q8TBY8 1022 aa8.98□□□□□ -0.97
CNOT1-216ENST00000569240 RALBP1Q15311 655 aa8.98□□□□□ -0.97
CNOT1-216ENST00000569240 MRE11P49959 708 aa8.98□□□□□ -0.97
CNOT1-216ENST00000569240 CALD1Q05682 793 aaKnown RBP8.97□□□□□ -0.97
CNOT1-216ENST00000569240 FTSJ3Q8IY81 847 aaKnown RBP8.96□□□□□ -0.97
CNOT1-216ENST00000569240 RWDD1Q9H446 243 aaPredicted RBP8.96□□□□□ -0.97
CNOT1-216ENST00000569240 GOLGA6L4A6NEF3 574 aa8.96□□□□□ -0.98
CNOT1-216ENST00000569240 CWC15Q9P013 229 aaKnown RBP8.95□□□□□ -0.98
CNOT1-216ENST00000569240 CCNB3Q8WWL7 1395 aa8.95□□□□□ -0.98
CNOT1-216ENST00000569240 TPM4P67936 248 aa8.95□□□□□ -0.98
CNOT1-216ENST00000569240 CENPQQ7L2Z9 268 aaPredicted RBP8.95□□□□□ -0.98
CNOT1-216ENST00000569240 DIAPH3Q9NSV4 1193 aa8.95□□□□□ -0.98
CNOT1-216ENST00000569240 DHX8Q14562 1220 aaKnown RBP8.95□□□□□ -0.98
CNOT1-216ENST00000569240 FAM161AQ3B820 660 aa8.95□□□□□ -0.98
CNOT1-216ENST00000569240 MTUS2Q5JR59 1369 aa8.95□□□□□ -0.98
CNOT1-216ENST00000569240 ZBED9Q6R2W3 1325 aa8.94□□□□□ -0.98
CNOT1-216ENST00000569240 CHMP4CQ96CF2 233 aa8.94□□□□□ -0.98
CNOT1-216ENST00000569240 RCAN3Q9UKA8 241 aa8.94□□□□□ -0.98
CNOT1-216ENST00000569240 KNSTRNQ9Y448 316 aa8.93□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 82.5 ms