RNA–Protein interactions for RNA: ENST00000568497.6

CLN3-235, Transcript of CLN3, battenin, humanhuman

TSL 3

Gene CLN3, Length 758 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-235ENST00000568497 NPM1P06748 294 aaKnown RBP eCLIP24.51■■□□□ 1.51
CLN3-235ENST00000568497 WRNQ14191 1432 aaPredicted RBP eCLIP24.49■■□□□ 1.51
CLN3-235ENST00000568497 DIP2BQ9P265 1576 aa24.47■■□□□ 1.51
CLN3-235ENST00000568497 MAPKBP1O60336 1514 aa24.44■■□□□ 1.5
CLN3-235ENST00000568497 JPH4Q96JJ6 628 aa24.42■■□□□ 1.5
CLN3-235ENST00000568497 TSPOAP1O95153 1857 aa24.42■■□□□ 1.5
CLN3-235ENST00000568497 ERICH3Q5RHP9 1530 aa24.4■■□□□ 1.5
CLN3-235ENST00000568497 ADCY10Q96PN6 1610 aa24.35■■□□□ 1.49
CLN3-235ENST00000568497 TOP2BQ02880 1626 aa24.32■■□□□ 1.48
CLN3-235ENST00000568497 BIVM-ERCC5R4GMW8 1640 aa24.32■■□□□ 1.48
CLN3-235ENST00000568497 RUSC2Q8N2Y8 1516 aa24.3■■□□□ 1.48
CLN3-235ENST00000568497 ADGRL1O94910 1474 aa24.23■■□□□ 1.47
CLN3-235ENST00000568497 HECW2Q9P2P5 1572 aa24.16■■□□□ 1.46
CLN3-235ENST00000568497 TTBK1Q5TCY1 1321 aaPredicted RBP24.11■■□□□ 1.45
CLN3-235ENST00000568497 KIAA0586Q9BVV6 1533 aa24.1■■□□□ 1.45
CLN3-235ENST00000568497 PPRC1Q5VV67 1664 aaKnown RBP24.05■■□□□ 1.44
CLN3-235ENST00000568497 PTPRGP23470 1445 aa24.03■■□□□ 1.44
CLN3-235ENST00000568497 ASXL2Q76L83 1435 aa24.01■■□□□ 1.43
CLN3-235ENST00000568497 PLB1Q6P1J6 1458 aa24■■□□□ 1.43
CLN3-235ENST00000568497 ABCC2Q92887 1545 aa24■■□□□ 1.43
CLN3-235ENST00000568497 GLI2P10070 1586 aa23.99■■□□□ 1.43
CLN3-235ENST00000568497 CUL7Q14999 1698 aa23.95■■□□□ 1.43
CLN3-235ENST00000568497 COL17A1Q9UMD9 1497 aaPredicted RBP23.94■■□□□ 1.42
CLN3-235ENST00000568497 IGF1RP08069 1367 aa23.93■■□□□ 1.42
CLN3-235ENST00000568497 TNIKQ9UKE5 1360 aa23.91■■□□□ 1.42
CLN3-235ENST00000568497 CARMIL2Q6F5E8 1435 aa23.91■■□□□ 1.42
CLN3-235ENST00000568497 TEX14Q8IWB6 1497 aa23.89■■□□□ 1.42
CLN3-235ENST00000568497 FBXO41Q8TF61 875 aa23.88■■□□□ 1.41
CLN3-235ENST00000568497 UHRF1BP1LA0JNW5 1464 aa23.87■■□□□ 1.41
CLN3-235ENST00000568497 MAP3K4Q9Y6R4 1608 aa23.86■■□□□ 1.41
CLN3-235ENST00000568497 EPRSP07814 1512 aaKnown RBP23.84■■□□□ 1.41
CLN3-235ENST00000568497 KIF27Q86VH2 1401 aa23.84■■□□□ 1.41
CLN3-235ENST00000568497 UACAQ9BZF9 1416 aa23.81■■□□□ 1.4
CLN3-235ENST00000568497 IQGAP2Q13576 1575 aa23.76■■□□□ 1.39
CLN3-235ENST00000568497 KDM5BQ9UGL1 1544 aa23.75■■□□□ 1.39
CLN3-235ENST00000568497 CARMIL1Q5VZK9 1371 aa23.75■■□□□ 1.39
CLN3-235ENST00000568497 ZCCHC11Q5TAX3 1644 aaKnown RBP23.73■■□□□ 1.39
CLN3-235ENST00000568497 DISP1Q96F81 1524 aa23.69■■□□□ 1.38
CLN3-235ENST00000568497 KIF21BO75037 1637 aa23.66■■□□□ 1.38
CLN3-235ENST00000568497 WDR7Q9Y4E6 1490 aa23.65■■□□□ 1.38
CLN3-235ENST00000568497 CD109Q6YHK3 1445 aa23.59■■□□□ 1.37
CLN3-235ENST00000568497 UGGT2Q9NYU1 1516 aa23.59■■□□□ 1.37
CLN3-235ENST00000568497 MAGI3Q5TCQ9 1506 aa23.58■■□□□ 1.36
CLN3-235ENST00000568497 CFAP43Q8NDM7 1665 aa23.57■■□□□ 1.36
CLN3-235ENST00000568497 KCNH8Q96L42 1107 aa23.56■■□□□ 1.36
CLN3-235ENST00000568497 KIAA0556O60303 1618 aa23.55■■□□□ 1.36
CLN3-235ENST00000568497 LMTK3Q96Q04 1460 aa23.55■■□□□ 1.36
CLN3-235ENST00000568497 PTPRMP28827 1452 aa23.51■■□□□ 1.35
CLN3-235ENST00000568497 RAPGEF2Q9Y4G8 1499 aa23.45■■□□□ 1.34
CLN3-235ENST00000568497 CHIC1Q5VXU3 224 aa23.45■■□□□ 1.34
CLN3-235ENST00000568497 ADAMTSL3P82987 1691 aa23.44■■□□□ 1.34
CLN3-235ENST00000568497 PCF11O94913 1555 aaKnown RBP23.44■■□□□ 1.34
CLN3-235ENST00000568497 ARAP3Q8WWN8 1544 aa23.41■■□□□ 1.34
CLN3-235ENST00000568497 FAM9AQ8IZU1 332 aaPredicted RBP23.39■■□□□ 1.33
CLN3-235ENST00000568497 ABCA8O94911 1581 aa23.38■■□□□ 1.33
CLN3-235ENST00000568497 ARID4BQ4LE39 1312 aaPredicted RBP23.37■■□□□ 1.33
CLN3-235ENST00000568497 MADDQ8WXG6 1647 aa23.37■■□□□ 1.33
CLN3-235ENST00000568497 BCORL1Q5H9F3 1711 aa23.33■■□□□ 1.33
CLN3-235ENST00000568497 GOLGA3Q08378 1498 aa23.33■■□□□ 1.33
CLN3-235ENST00000568497 PHLDB1Q86UU1 1377 aa23.32■■□□□ 1.32
CLN3-235ENST00000568497 ARID3CA6NKF2 412 aa23.31■■□□□ 1.32
CLN3-235ENST00000568497 CTTNBP2Q8WZ74 1663 aa23.3■■□□□ 1.32
CLN3-235ENST00000568497 RAPGEF3O95398 923 aa23.3■■□□□ 1.32
CLN3-235ENST00000568497 DISP3Q9P2K9 1392 aa23.29■■□□□ 1.32
CLN3-235ENST00000568497 HSPA2P54652 639 aa23.29■■□□□ 1.32
CLN3-235ENST00000568497 PLPPR3Q6T4P5 718 aa23.28■■□□□ 1.32
CLN3-235ENST00000568497 RIMS1Q86UR5 1692 aaKnown RBP23.28■■□□□ 1.32
CLN3-235ENST00000568497 CERKQ8TCT0 537 aa23.26■■□□□ 1.31
CLN3-235ENST00000568497 EHMT2Q96KQ7 1210 aa23.25■■□□□ 1.31
CLN3-235ENST00000568497 SOCS7O14512 581 aa23.24■■□□□ 1.31
CLN3-235ENST00000568497 ILDR2Q71H61 639 aa23.24■■□□□ 1.31
CLN3-235ENST00000568497 ABCA9Q8IUA7 1624 aa23.22■■□□□ 1.31
CLN3-235ENST00000568497 FRMPD1Q5SYB0 1578 aa23.18■■□□□ 1.3
CLN3-235ENST00000568497 NEO1Q92859 1461 aa23.18■■□□□ 1.3
CLN3-235ENST00000568497 ATP10BO94823 1461 aa23.17■■□□□ 1.3
CLN3-235ENST00000568497 ARHGEF40Q8TER5 1519 aa23.15■■□□□ 1.3
CLN3-235ENST00000568497 CSRNP3Q8WYN3 585 aa23.15■■□□□ 1.3
CLN3-235ENST00000568497 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP23.11■■□□□ 1.29
CLN3-235ENST00000568497 HNRNPUL2Q1KMD3 747 aaKnown RBP23.11■■□□□ 1.29
CLN3-235ENST00000568497 PRXQ9BXM0 1461 aa23.11■■□□□ 1.29
CLN3-235ENST00000568497 P3H3Q8IVL6 736 aa23.1■■□□□ 1.29
CLN3-235ENST00000568497 POGZQ7Z3K3 1410 aa23.09■■□□□ 1.29
CLN3-235ENST00000568497 FANCAO15360 1455 aa23.08■■□□□ 1.29
CLN3-235ENST00000568497 SPATA31D1Q6ZQQ2 1576 aa23.06■■□□□ 1.28
CLN3-235ENST00000568497 DENND4BO75064 1496 aaPredicted RBP23.05■■□□□ 1.28
CLN3-235ENST00000568497 RICTORQ6R327 1708 aa23.03■■□□□ 1.28
CLN3-235ENST00000568497 AKNAQ7Z591 1439 aa23.03■■□□□ 1.28
CLN3-235ENST00000568497 RANGAP1P46060 587 aaPredicted RBP23.03■■□□□ 1.28
CLN3-235ENST00000568497 MLECQ14165 292 aa23.03■■□□□ 1.28
CLN3-235ENST00000568497 FER1L4A9Z1Z3 1794 aa23.01■■□□□ 1.27
CLN3-235ENST00000568497 RAPGEF6Q8TEU7 1601 aa22.99■■□□□ 1.27
CLN3-235ENST00000568497 FHOD3Q2V2M9 1422 aa22.99■■□□□ 1.27
CLN3-235ENST00000568497 EEA1Q15075 1411 aa22.98■■□□□ 1.27
CLN3-235ENST00000568497 ZFYVE16Q7Z3T8 1539 aa22.98■■□□□ 1.27
CLN3-235ENST00000568497 SIGLEC1Q9BZZ2 1709 aa22.96■■□□□ 1.27
CLN3-235ENST00000568497 EFCAB5A4FU69 1503 aa22.96■■□□□ 1.27
CLN3-235ENST00000568497 TTC37Q6PGP7 1564 aa22.96■■□□□ 1.27
CLN3-235ENST00000568497 CFAP74Q9C0B2 1584 aa22.95■■□□□ 1.26
CLN3-235ENST00000568497 YEATS2Q9ULM3 1422 aa22.95■■□□□ 1.26
CLN3-235ENST00000568497 PREX1Q8TCU6 1659 aa22.94■■□□□ 1.26
Retrieved 100 of 20,778 RNA–protein pairs in 42.1 ms