RNA–Protein interactions for RNA: ENST00000568291.2

SF3B3-211, Transcript of splicing factor 3b subunit 3, humanhuman

TSL 2

Gene SF3B3, Length 1,067 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B3-211ENST00000568291 RUSC2Q8N2Y8 1516 aa16.53■□□□□ 0.24
SF3B3-211ENST00000568291 KIF13AQ9H1H9 1805 aa16.48■□□□□ 0.23
SF3B3-211ENST00000568291 PRG4Q92954 1404 aaPredicted RBP16.46■□□□□ 0.23
SF3B3-211ENST00000568291 CUL7Q14999 1698 aa16.43■□□□□ 0.22
SF3B3-211ENST00000568291 JPH4Q96JJ6 628 aa16.37■□□□□ 0.21
SF3B3-211ENST00000568291 ADCY10Q96PN6 1610 aa16.37■□□□□ 0.21
SF3B3-211ENST00000568291 KIF27Q86VH2 1401 aa16.35■□□□□ 0.21
SF3B3-211ENST00000568291 MAPKBP1O60336 1514 aa16.34■□□□□ 0.21
SF3B3-211ENST00000568291 KIAA0586Q9BVV6 1533 aa16.34■□□□□ 0.21
SF3B3-211ENST00000568291 DIP2BQ9P265 1576 aa16.32■□□□□ 0.2
SF3B3-211ENST00000568291 IGF1RP08069 1367 aa16.3■□□□□ 0.2
SF3B3-211ENST00000568291 ABCC10Q5T3U5 1492 aa16.29■□□□□ 0.2
SF3B3-211ENST00000568291 TSPOAP1O95153 1857 aa16.25■□□□□ 0.19
SF3B3-211ENST00000568291 NPM1P06748 294 aaKnown RBP eCLIP16.24■□□□□ 0.19
SF3B3-211ENST00000568291 IQGAP2Q13576 1575 aa16.23■□□□□ 0.19
SF3B3-211ENST00000568291 FAM69CQ0P6D2 419 aa16.22■□□□□ 0.19
SF3B3-211ENST00000568291 CARMIL1Q5VZK9 1371 aa16.21■□□□□ 0.19
SF3B3-211ENST00000568291 KDM6BO15054 1643 aa16.2■□□□□ 0.18
SF3B3-211ENST00000568291 CARMIL2Q6F5E8 1435 aa16.18■□□□□ 0.18
SF3B3-211ENST00000568291 PTPRGP23470 1445 aa16.17■□□□□ 0.18
SF3B3-211ENST00000568291 TNIKQ9UKE5 1360 aa16.15■□□□□ 0.18
SF3B3-211ENST00000568291 ABCC2Q92887 1545 aa16.15■□□□□ 0.18
SF3B3-211ENST00000568291 TTBK1Q5TCY1 1321 aaPredicted RBP16.12■□□□□ 0.17
SF3B3-211ENST00000568291 PPRC1Q5VV67 1664 aaKnown RBP16.11■□□□□ 0.17
SF3B3-211ENST00000568291 DISP1Q96F81 1524 aa16.11■□□□□ 0.17
SF3B3-211ENST00000568291 CTTNBP2Q8WZ74 1663 aa16.11■□□□□ 0.17
SF3B3-211ENST00000568291 KIAA0556O60303 1618 aa16.1■□□□□ 0.17
SF3B3-211ENST00000568291 UHRF1BP1LA0JNW5 1464 aa16.1■□□□□ 0.17
SF3B3-211ENST00000568291 RAPGEF2Q9Y4G8 1499 aa16.1■□□□□ 0.17
SF3B3-211ENST00000568291 UGGT2Q9NYU1 1516 aa16.09■□□□□ 0.17
SF3B3-211ENST00000568291 ASXL2Q76L83 1435 aa16.09■□□□□ 0.17
SF3B3-211ENST00000568291 GLI2P10070 1586 aa16.09■□□□□ 0.17
SF3B3-211ENST00000568291 PLB1Q6P1J6 1458 aa16.08■□□□□ 0.16
SF3B3-211ENST00000568291 UACAQ9BZF9 1416 aa16.07■□□□□ 0.16
SF3B3-211ENST00000568291 ZCCHC11Q5TAX3 1644 aaKnown RBP16.07■□□□□ 0.16
SF3B3-211ENST00000568291 FOXD1Q16676 465 aa16.05■□□□□ 0.16
SF3B3-211ENST00000568291 FAM9AQ8IZU1 332 aaPredicted RBP16.05■□□□□ 0.16
SF3B3-211ENST00000568291 MAP3K4Q9Y6R4 1608 aa16.04■□□□□ 0.16
SF3B3-211ENST00000568291 KDM5BQ9UGL1 1544 aa16.03■□□□□ 0.16
SF3B3-211ENST00000568291 EPRSP07814 1512 aaKnown RBP16■□□□□ 0.15
SF3B3-211ENST00000568291 CSRNP3Q8WYN3 585 aa15.95■□□□□ 0.14
SF3B3-211ENST00000568291 EHMT2Q96KQ7 1210 aa15.95■□□□□ 0.14
SF3B3-211ENST00000568291 GOLGA3Q08378 1498 aa15.95■□□□□ 0.14
SF3B3-211ENST00000568291 TEX14Q8IWB6 1497 aa15.95■□□□□ 0.14
SF3B3-211ENST00000568291 KDM4FA0A1W2PPD8 638 aa15.94■□□□□ 0.14
SF3B3-211ENST00000568291 WDR7Q9Y4E6 1490 aa15.94■□□□□ 0.14
SF3B3-211ENST00000568291 ABCA8O94911 1581 aa15.93■□□□□ 0.14
SF3B3-211ENST00000568291 CFAP43Q8NDM7 1665 aa15.92■□□□□ 0.14
SF3B3-211ENST00000568291 PRXQ9BXM0 1461 aa15.91■□□□□ 0.14
SF3B3-211ENST00000568291 ADGRL1O94910 1474 aa15.9■□□□□ 0.14
SF3B3-211ENST00000568291 COL17A1Q9UMD9 1497 aaPredicted RBP15.9■□□□□ 0.14
SF3B3-211ENST00000568291 RANGAP1P46060 587 aaPredicted RBP15.87■□□□□ 0.13
SF3B3-211ENST00000568291 P3H3Q8IVL6 736 aa15.84■□□□□ 0.13
SF3B3-211ENST00000568291 MAGI3Q5TCQ9 1506 aa15.83■□□□□ 0.12
SF3B3-211ENST00000568291 SAMD9Q5K651 1589 aa15.81■□□□□ 0.12
SF3B3-211ENST00000568291 CD109Q6YHK3 1445 aa15.8■□□□□ 0.12
SF3B3-211ENST00000568291 KIF21BO75037 1637 aa15.77■□□□□ 0.12
SF3B3-211ENST00000568291 RAPGEF6Q8TEU7 1601 aa15.77■□□□□ 0.12
SF3B3-211ENST00000568291 ABCA9Q8IUA7 1624 aa15.76■□□□□ 0.11
SF3B3-211ENST00000568291 KCNH8Q96L42 1107 aa15.75■□□□□ 0.11
SF3B3-211ENST00000568291 EEA1Q15075 1411 aa15.75■□□□□ 0.11
SF3B3-211ENST00000568291 HECW2Q9P2P5 1572 aa15.75■□□□□ 0.11
SF3B3-211ENST00000568291 ATP10BO94823 1461 aa15.73■□□□□ 0.11
SF3B3-211ENST00000568291 ARID3CA6NKF2 412 aa15.73■□□□□ 0.11
SF3B3-211ENST00000568291 UBTFP17480 764 aaKnown RBP15.71■□□□□ 0.11
SF3B3-211ENST00000568291 ARAP3Q8WWN8 1544 aa15.7■□□□□ 0.1
SF3B3-211ENST00000568291 NUP153P49790 1475 aaKnown RBP15.65■□□□□ 0.1
SF3B3-211ENST00000568291 FHOD3Q2V2M9 1422 aa15.65■□□□□ 0.1
SF3B3-211ENST00000568291 FRMPD1Q5SYB0 1578 aa15.65■□□□□ 0.1
SF3B3-211ENST00000568291 NEO1Q92859 1461 aa15.63■□□□□ 0.09
SF3B3-211ENST00000568291 EFCAB5A4FU69 1503 aa15.63■□□□□ 0.09
SF3B3-211ENST00000568291 CFAP74Q9C0B2 1584 aa15.61■□□□□ 0.09
SF3B3-211ENST00000568291 PHLDB1Q86UU1 1377 aa15.61■□□□□ 0.09
SF3B3-211ENST00000568291 ADAMTSL3P82987 1691 aa15.6■□□□□ 0.09
SF3B3-211ENST00000568291 ARHGEF40Q8TER5 1519 aa15.59■□□□□ 0.09
SF3B3-211ENST00000568291 RICTORQ6R327 1708 aa15.59■□□□□ 0.09
SF3B3-211ENST00000568291 BCORL1Q5H9F3 1711 aa15.58■□□□□ 0.08
SF3B3-211ENST00000568291 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP15.58■□□□□ 0.08
SF3B3-211ENST00000568291 HNRNPUL2Q1KMD3 747 aaKnown RBP15.58■□□□□ 0.08
SF3B3-211ENST00000568291 TTC37Q6PGP7 1564 aa15.58■□□□□ 0.08
SF3B3-211ENST00000568291 MADDQ8WXG6 1647 aa15.55■□□□□ 0.08
SF3B3-211ENST00000568291 ILDR1Q86SU0 546 aaPredicted RBP15.55■□□□□ 0.08
SF3B3-211ENST00000568291 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP15.54■□□□□ 0.08
SF3B3-211ENST00000568291 RAPGEF3O95398 923 aa15.54■□□□□ 0.08
SF3B3-211ENST00000568291 ATP1B4Q9UN42 357 aaPredicted RBP15.54■□□□□ 0.08
SF3B3-211ENST00000568291 CDK13Q14004 1512 aaKnown RBP15.53■□□□□ 0.08
SF3B3-211ENST00000568291 PTPRMP28827 1452 aa15.52■□□□□ 0.08
SF3B3-211ENST00000568291 RIMS1Q86UR5 1692 aaKnown RBP15.52■□□□□ 0.08
SF3B3-211ENST00000568291 FANCAO15360 1455 aa15.52■□□□□ 0.07
SF3B3-211ENST00000568291 HECW1Q76N89 1606 aa15.51■□□□□ 0.07
SF3B3-211ENST00000568291 ZMYM4Q5VZL5 1548 aa15.51■□□□□ 0.07
SF3B3-211ENST00000568291 DENND4BO75064 1496 aaPredicted RBP15.51■□□□□ 0.07
SF3B3-211ENST00000568291 PLEKHD1A6NEE1 506 aa15.49■□□□□ 0.07
SF3B3-211ENST00000568291 AKNAQ7Z591 1439 aa15.49■□□□□ 0.07
SF3B3-211ENST00000568291 MYO5CQ9NQX4 1742 aa15.48■□□□□ 0.07
SF3B3-211ENST00000568291 ZFYVE16Q7Z3T8 1539 aa15.48■□□□□ 0.07
SF3B3-211ENST00000568291 LOC105371045A0A1W2PR82 267 aa15.47■□□□□ 0.07
SF3B3-211ENST00000568291 SIGLEC1Q9BZZ2 1709 aa15.47■□□□□ 0.07
SF3B3-211ENST00000568291 ARID4BQ4LE39 1312 aaPredicted RBP15.45■□□□□ 0.06
SF3B3-211ENST00000568291 PCF11O94913 1555 aaKnown RBP15.45■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 63.7 ms