RNA–Protein interactions for RNA: ENST00000568219.5

PALB2-206, Transcript of partner and localizer of BRCA2, humanhuman

TSL 1 (best) BASIC

Gene PALB2, Length 3,963 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PALB2-206ENST00000568219 ZBTB4Q9P1Z0 1013 aaPredicted RBP14.92□□□□□ -0.02
PALB2-206ENST00000568219 PPP4R2Q9NY27 417 aa14.9□□□□□ -0.02
PALB2-206ENST00000568219 LAS1LQ9Y4W2 734 aaKnown RBP14.9□□□□□ -0.02
PALB2-206ENST00000568219 EEA1Q15075 1411 aa14.87□□□□□ -0.03
PALB2-206ENST00000568219 VPS8Q8N3P4 1428 aa14.85□□□□□ -0.03
PALB2-206ENST00000568219 ANO8Q9HCE9 1232 aaPredicted RBP14.85□□□□□ -0.03
PALB2-206ENST00000568219 ARID3CA6NKF2 412 aa14.84□□□□□ -0.03
PALB2-206ENST00000568219 CHIC2Q9UKJ5 165 aa14.84□□□□□ -0.03
PALB2-206ENST00000568219 PRKCSHP14314 528 aaPredicted RBP14.83□□□□□ -0.04
PALB2-206ENST00000568219 CCER2I3L3R5 266 aa14.82□□□□□ -0.04
PALB2-206ENST00000568219 CEP164Q9UPV0 1460 aa14.81□□□□□ -0.04
PALB2-206ENST00000568219 CCNB3Q8WWL7 1395 aa14.81□□□□□ -0.04
PALB2-206ENST00000568219 WIZO95785 1651 aa14.79□□□□□ -0.04
PALB2-206ENST00000568219 NEFMP07197 916 aa14.79□□□□□ -0.04
PALB2-206ENST00000568219 RAB3GAP2Q9H2M9 1393 aa14.79□□□□□ -0.04
PALB2-206ENST00000568219 ARXQ96QS3 562 aa14.78□□□□□ -0.04
PALB2-206ENST00000568219 FANCIQ9NVI1 1328 aa14.77□□□□□ -0.05
PALB2-206ENST00000568219 BAZ1BQ9UIG0 1483 aaKnown RBP14.76□□□□□ -0.05
PALB2-206ENST00000568219 PPP1R15AO75807 674 aaPredicted RBP14.74□□□□□ -0.05
PALB2-206ENST00000568219 EIF4G2P78344 907 aaKnown RBP eCLIP14.73□□□□□ -0.05
PALB2-206ENST00000568219 PAK3O75914 559 aaPredicted RBP14.73□□□□□ -0.05
PALB2-206ENST00000568219 RRP7BPQ9NSQ0 103 aa14.73□□□□□ -0.05
PALB2-206ENST00000568219 TMC1Q8TDI8 760 aa14.71□□□□□ -0.05
PALB2-206ENST00000568219 RAPGEF2Q9Y4G8 1499 aa14.68□□□□□ -0.06
PALB2-206ENST00000568219 IL27Q8NEV9 243 aa14.68□□□□□ -0.06
PALB2-206ENST00000568219 HSPA5P11021 654 aaKnown RBP14.65□□□□□ -0.06
PALB2-206ENST00000568219 IPO9Q96P70 1041 aaKnown RBP14.65□□□□□ -0.06
PALB2-206ENST00000568219 SETD5Q9C0A6 1442 aa14.64□□□□□ -0.07
PALB2-206ENST00000568219 FOXD1Q16676 465 aa14.6□□□□□ -0.07
PALB2-206ENST00000568219 CCDC184Q52MB2 194 aa14.57□□□□□ -0.08
PALB2-206ENST00000568219 BAZ1AQ9NRL2 1556 aaPredicted RBP14.56□□□□□ -0.08
PALB2-206ENST00000568219 TIMELESSQ9UNS1 1208 aa14.56□□□□□ -0.08
PALB2-206ENST00000568219 SLC4A3P48751 1232 aa14.55□□□□□ -0.08
PALB2-206ENST00000568219 ERICH6BQ5W0A0 696 aa14.55□□□□□ -0.08
PALB2-206ENST00000568219 KDM2AQ9Y2K7 1162 aa14.54□□□□□ -0.08
PALB2-206ENST00000568219 PPM1GO15355 546 aaPredicted RBP14.53□□□□□ -0.08
PALB2-206ENST00000568219 MTUS2Q5JR59 1369 aa14.52□□□□□ -0.08
PALB2-206ENST00000568219 ZNF777Q9ULD5 760 aaPredicted RBP14.49□□□□□ -0.09
PALB2-206ENST00000568219 RGS3P49796 1198 aa14.49□□□□□ -0.09
PALB2-206ENST00000568219 PRKRIP1Q9H875 184 aaPredicted RBP14.48□□□□□ -0.09
PALB2-206ENST00000568219 SLC4A1APQ9BWU0 796 aaKnown RBP14.47□□□□□ -0.09
PALB2-206ENST00000568219 BRPF3Q9ULD4 1205 aa14.46□□□□□ -0.09
PALB2-206ENST00000568219 KIF21BO75037 1637 aa14.45□□□□□ -0.1
PALB2-206ENST00000568219 L3MBTL2Q969R5 705 aa14.44□□□□□ -0.1
PALB2-206ENST00000568219 WDR97A6NE52 1622 aa14.44□□□□□ -0.1
PALB2-206ENST00000568219 CANXP27824 592 aaKnown RBP14.43□□□□□ -0.1
PALB2-206ENST00000568219 DDRGK1Q96HY6 314 aa14.43□□□□□ -0.1
PALB2-206ENST00000568219 NUDCQ9Y266 331 aa14.43□□□□□ -0.1
PALB2-206ENST00000568219 WASHC2AQ641Q2 1341 aa14.43□□□□□ -0.1
PALB2-206ENST00000568219 PDE4AP27815 886 aa14.42□□□□□ -0.1
PALB2-206ENST00000568219 EXOC6Q8TAG9 804 aa14.42□□□□□ -0.1
PALB2-206ENST00000568219 KIF27Q86VH2 1401 aa14.42□□□□□ -0.1
PALB2-206ENST00000568219 ARID4BQ4LE39 1312 aaPredicted RBP14.41□□□□□ -0.1
PALB2-206ENST00000568219 PLIN1O60240 522 aa14.4□□□□□ -0.1
PALB2-206ENST00000568219 GLIPR1L2Q4G1C9 344 aa14.4□□□□□ -0.1
PALB2-206ENST00000568219 TOP2AP11388 1531 aaKnown RBP14.4□□□□□ -0.1
PALB2-206ENST00000568219 ZBED9Q6R2W3 1325 aa14.4□□□□□ -0.1
PALB2-206ENST00000568219 NAP1L5Q96NT1 182 aaPredicted RBP14.38□□□□□ -0.11
PALB2-206ENST00000568219 RCAN3Q9UKA8 241 aa14.37□□□□□ -0.11
PALB2-206ENST00000568219 TCERG1O14776 1098 aaKnown RBP14.37□□□□□ -0.11
PALB2-206ENST00000568219 GSE1Q14687 1217 aa14.36□□□□□ -0.11
PALB2-206ENST00000568219 AKNAQ7Z591 1439 aa14.36□□□□□ -0.11
PALB2-206ENST00000568219 PHLDB1Q86UU1 1377 aa14.35□□□□□ -0.11
PALB2-206ENST00000568219 NACADO15069 1562 aa14.35□□□□□ -0.11
PALB2-206ENST00000568219 SKAP1Q86WV1 359 aa14.35□□□□□ -0.11
PALB2-206ENST00000568219 ARAP1Q96P48 1450 aa14.35□□□□□ -0.11
PALB2-206ENST00000568219 SPRYD3Q8NCJ5 442 aa14.34□□□□□ -0.11
PALB2-206ENST00000568219 CC2D1BQ5T0F9 858 aaKnown RBP14.33□□□□□ -0.12
PALB2-206ENST00000568219 SLKQ9H2G2 1235 aaPredicted RBP14.33□□□□□ -0.12
PALB2-206ENST00000568219 CARD11Q9BXL7 1154 aa14.32□□□□□ -0.12
PALB2-206ENST00000568219 SMARCA2P51531 1590 aa14.32□□□□□ -0.12
PALB2-206ENST00000568219 MPHOSPH9Q99550 1183 aa14.32□□□□□ -0.12
PALB2-206ENST00000568219 RRBP1Q9P2E9 1410 aaKnown RBP14.32□□□□□ -0.12
PALB2-206ENST00000568219 RGL3Q3MIN7 710 aa14.31□□□□□ -0.12
PALB2-206ENST00000568219 GZF1Q9H116 711 aaPredicted RBP14.3□□□□□ -0.12
PALB2-206ENST00000568219 USP35Q9P2H5 1018 aa14.3□□□□□ -0.12
PALB2-206ENST00000568219 CARMIL1Q5VZK9 1371 aa14.29□□□□□ -0.12
PALB2-206ENST00000568219 C11orf95C9JLR9 678 aaPredicted RBP14.29□□□□□ -0.12
PALB2-206ENST00000568219 FRAT1Q92837 279 aaPredicted RBP14.29□□□□□ -0.12
PALB2-206ENST00000568219 NFKBIBQ15653 356 aa14.28□□□□□ -0.12
PALB2-206ENST00000568219 UPF2Q9HAU5 1272 aaKnown RBP14.28□□□□□ -0.12
PALB2-206ENST00000568219 ARHGAP35Q9NRY4 1499 aa14.27□□□□□ -0.12
PALB2-206ENST00000568219 WDR43Q15061 677 aaKnown RBP eCLIP14.26□□□□□ -0.13
PALB2-206ENST00000568219 RRP1P56182 461 aaKnown RBP14.26□□□□□ -0.13
PALB2-206ENST00000568219 CUX2O14529 1486 aa14.25□□□□□ -0.13
PALB2-206ENST00000568219 GOLGA6L2Q8N9W4 650 aaPredicted RBP14.24□□□□□ -0.13
PALB2-206ENST00000568219 KIF7Q2M1P5 1343 aa14.24□□□□□ -0.13
PALB2-206ENST00000568219 VSIG10Q8N0Z9 540 aa14.23□□□□□ -0.13
PALB2-206ENST00000568219 FHOD3Q2V2M9 1422 aa14.23□□□□□ -0.13
PALB2-206ENST00000568219 FHAD1B1AJZ9 1412 aa14.22□□□□□ -0.13
PALB2-206ENST00000568219 HSP90AA1P07900 732 aaKnown RBP14.22□□□□□ -0.13
PALB2-206ENST00000568219 GRWD1Q9BQ67 446 aaKnown RBP eCLIP14.22□□□□□ -0.132e-6■□□□□ 9.7
PALB2-206ENST00000568219 CRBNQ96SW2 442 aa14.22□□□□□ -0.13
PALB2-206ENST00000568219 SYNJ1O43426 1573 aa14.22□□□□□ -0.13
PALB2-206ENST00000568219 FRAT2O75474 233 aaPredicted RBP14.22□□□□□ -0.13
PALB2-206ENST00000568219 BECN1Q14457 450 aa14.22□□□□□ -0.13
PALB2-206ENST00000568219 CCDC7Q96M83 1385 aa14.21□□□□□ -0.13
PALB2-206ENST00000568219 CDCA7LQ96GN5 454 aa14.21□□□□□ -0.14
PALB2-206ENST00000568219 NEUROD2Q15784 382 aa14.2□□□□□ -0.14
PALB2-206ENST00000568219 DCAF11Q8TEB1 546 aa14.19□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 11.6 ms