RNA–Protein interactions for RNA: ENST00000567935.1

COMMD4-221, Transcript of COMM domain containing 4, humanhuman

TSL 3

Gene COMMD4, Length 502 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COMMD4-221ENST00000567935 DIP2BQ9P265 1576 aa23.87■■□□□ 1.41
COMMD4-221ENST00000567935 MAPKBP1O60336 1514 aa23.82■■□□□ 1.4
COMMD4-221ENST00000567935 PRG4Q92954 1404 aaPredicted RBP23.82■■□□□ 1.4
COMMD4-221ENST00000567935 EEA1Q15075 1411 aa23.77■■□□□ 1.4
COMMD4-221ENST00000567935 NPM1P06748 294 aaKnown RBP eCLIP23.73■■□□□ 1.39
COMMD4-221ENST00000567935 FHAD1B1AJZ9 1412 aa23.73■■□□□ 1.39
COMMD4-221ENST00000567935 TOP2BQ02880 1626 aa23.73■■□□□ 1.39
COMMD4-221ENST00000567935 TSPOAP1O95153 1857 aa23.73■■□□□ 1.39
COMMD4-221ENST00000567935 HECW2Q9P2P5 1572 aa23.72■■□□□ 1.39
COMMD4-221ENST00000567935 BIVM-ERCC5R4GMW8 1640 aa23.71■■□□□ 1.39
COMMD4-221ENST00000567935 ADGRL1O94910 1474 aa23.71■■□□□ 1.39
COMMD4-221ENST00000567935 ADCY10Q96PN6 1610 aa23.7■■□□□ 1.38
COMMD4-221ENST00000567935 JPH4Q96JJ6 628 aa23.69■■□□□ 1.38
COMMD4-221ENST00000567935 LOC105371045A0A1W2PR82 267 aa23.62■■□□□ 1.37
COMMD4-221ENST00000567935 FAM9AQ8IZU1 332 aaPredicted RBP23.61■■□□□ 1.37
COMMD4-221ENST00000567935 ERICH3Q5RHP9 1530 aa23.57■■□□□ 1.36
COMMD4-221ENST00000567935 RUSC2Q8N2Y8 1516 aa23.57■■□□□ 1.36
COMMD4-221ENST00000567935 FBXO41Q8TF61 875 aa23.51■■□□□ 1.35
COMMD4-221ENST00000567935 PPRC1Q5VV67 1664 aaKnown RBP23.49■■□□□ 1.35
COMMD4-221ENST00000567935 CSRNP3Q8WYN3 585 aa23.48■■□□□ 1.35
COMMD4-221ENST00000567935 COL17A1Q9UMD9 1497 aaPredicted RBP23.44■■□□□ 1.34
COMMD4-221ENST00000567935 KIF21BO75037 1637 aa23.38■■□□□ 1.33
COMMD4-221ENST00000567935 GLI2P10070 1586 aa23.36■■□□□ 1.33
COMMD4-221ENST00000567935 GOLGA3Q08378 1498 aa23.36■■□□□ 1.33
COMMD4-221ENST00000567935 ASXL2Q76L83 1435 aa23.34■■□□□ 1.33
COMMD4-221ENST00000567935 KIF27Q86VH2 1401 aa23.33■■□□□ 1.33
COMMD4-221ENST00000567935 ABCC2Q92887 1545 aa23.31■■□□□ 1.32
COMMD4-221ENST00000567935 TNIKQ9UKE5 1360 aa23.3■■□□□ 1.32
COMMD4-221ENST00000567935 KIAA0586Q9BVV6 1533 aa23.3■■□□□ 1.32
COMMD4-221ENST00000567935 PLB1Q6P1J6 1458 aa23.3■■□□□ 1.32
COMMD4-221ENST00000567935 PTPRGP23470 1445 aa23.28■■□□□ 1.32
COMMD4-221ENST00000567935 TTBK1Q5TCY1 1321 aaPredicted RBP23.27■■□□□ 1.32
COMMD4-221ENST00000567935 MAP3K4Q9Y6R4 1608 aa23.22■■□□□ 1.31
COMMD4-221ENST00000567935 LMTK3Q96Q04 1460 aa23.21■■□□□ 1.31
COMMD4-221ENST00000567935 CUL7Q14999 1698 aa23.21■■□□□ 1.31
COMMD4-221ENST00000567935 EPRSP07814 1512 aaKnown RBP23.19■■□□□ 1.3
COMMD4-221ENST00000567935 PRXQ9BXM0 1461 aa23.19■■□□□ 1.3
COMMD4-221ENST00000567935 TEX14Q8IWB6 1497 aa23.18■■□□□ 1.3
COMMD4-221ENST00000567935 EHMT2Q96KQ7 1210 aa23.15■■□□□ 1.3
COMMD4-221ENST00000567935 UBTFP17480 764 aaKnown RBP23.14■■□□□ 1.29
COMMD4-221ENST00000567935 UHRF1BP1LA0JNW5 1464 aa23.13■■□□□ 1.29
COMMD4-221ENST00000567935 CEP162Q5TB80 1403 aa23.13■■□□□ 1.29
COMMD4-221ENST00000567935 RAPGEF2Q9Y4G8 1499 aa23.11■■□□□ 1.29
COMMD4-221ENST00000567935 CARMIL2Q6F5E8 1435 aa23.08■■□□□ 1.28
COMMD4-221ENST00000567935 UACAQ9BZF9 1416 aa23.08■■□□□ 1.28
COMMD4-221ENST00000567935 IGF1RP08069 1367 aa23.05■■□□□ 1.28
COMMD4-221ENST00000567935 KDM5BQ9UGL1 1544 aa23.05■■□□□ 1.28
COMMD4-221ENST00000567935 ILDR2Q71H61 639 aa23.02■■□□□ 1.28
COMMD4-221ENST00000567935 ZCCHC11Q5TAX3 1644 aaKnown RBP23.01■■□□□ 1.27
COMMD4-221ENST00000567935 SOCS7O14512 581 aa22.98■■□□□ 1.27
COMMD4-221ENST00000567935 PTPRMP28827 1452 aa22.97■■□□□ 1.27
COMMD4-221ENST00000567935 CARMIL1Q5VZK9 1371 aa22.96■■□□□ 1.27
COMMD4-221ENST00000567935 DISP1Q96F81 1524 aa22.94■■□□□ 1.26
COMMD4-221ENST00000567935 WDR7Q9Y4E6 1490 aa22.94■■□□□ 1.26
COMMD4-221ENST00000567935 CLIP1P30622 1438 aa22.94■■□□□ 1.26
COMMD4-221ENST00000567935 IQGAP2Q13576 1575 aa22.93■■□□□ 1.26
COMMD4-221ENST00000567935 MAGI3Q5TCQ9 1506 aa22.92■■□□□ 1.26
COMMD4-221ENST00000567935 PCF11O94913 1555 aaKnown RBP22.91■■□□□ 1.26
COMMD4-221ENST00000567935 ADAMTSL3P82987 1691 aa22.9■■□□□ 1.26
COMMD4-221ENST00000567935 CD109Q6YHK3 1445 aa22.9■■□□□ 1.26
COMMD4-221ENST00000567935 DISP3Q9P2K9 1392 aa22.89■■□□□ 1.26
COMMD4-221ENST00000567935 CFAP43Q8NDM7 1665 aa22.85■■□□□ 1.25
COMMD4-221ENST00000567935 TRIM26Q12899 539 aaPredicted RBP22.84■■□□□ 1.25
COMMD4-221ENST00000567935 CERKQ8TCT0 537 aa22.8■■□□□ 1.24
COMMD4-221ENST00000567935 KCNH8Q96L42 1107 aa22.79■■□□□ 1.24
COMMD4-221ENST00000567935 VPS8Q8N3P4 1428 aa22.79■■□□□ 1.24
COMMD4-221ENST00000567935 KIAA0556O60303 1618 aa22.77■■□□□ 1.24
COMMD4-221ENST00000567935 MADDQ8WXG6 1647 aa22.77■■□□□ 1.24
COMMD4-221ENST00000567935 ARAP3Q8WWN8 1544 aa22.77■■□□□ 1.24
COMMD4-221ENST00000567935 UGGT2Q9NYU1 1516 aa22.76■■□□□ 1.23
COMMD4-221ENST00000567935 HSPA2P54652 639 aa22.75■■□□□ 1.23
COMMD4-221ENST00000567935 BCORL1Q5H9F3 1711 aa22.74■■□□□ 1.23
COMMD4-221ENST00000567935 PCGF6Q9BYE7 350 aa22.72■■□□□ 1.23
COMMD4-221ENST00000567935 CTTNBP2Q8WZ74 1663 aa22.68■■□□□ 1.22
COMMD4-221ENST00000567935 SPATA31D1Q6ZQQ2 1576 aa22.65■■□□□ 1.22
COMMD4-221ENST00000567935 ARHGAP35Q9NRY4 1499 aa22.65■■□□□ 1.22
COMMD4-221ENST00000567935 RIMS1Q86UR5 1692 aaKnown RBP22.65■■□□□ 1.22
COMMD4-221ENST00000567935 ARID4BQ4LE39 1312 aaPredicted RBP22.64■■□□□ 1.22
COMMD4-221ENST00000567935 RAPGEF3O95398 923 aa22.64■■□□□ 1.21
COMMD4-221ENST00000567935 EFCAB5A4FU69 1503 aa22.63■■□□□ 1.21
COMMD4-221ENST00000567935 ABCA8O94911 1581 aa22.62■■□□□ 1.21
COMMD4-221ENST00000567935 FRMPD1Q5SYB0 1578 aa22.59■■□□□ 1.21
COMMD4-221ENST00000567935 PLPPR3Q6T4P5 718 aa22.58■■□□□ 1.21
COMMD4-221ENST00000567935 APLP2Q06481 763 aa22.57■■□□□ 1.2
COMMD4-221ENST00000567935 PHLDB1Q86UU1 1377 aa22.55■■□□□ 1.2
COMMD4-221ENST00000567935 RANGAP1P46060 587 aaPredicted RBP22.55■■□□□ 1.2
COMMD4-221ENST00000567935 ABCA9Q8IUA7 1624 aa22.51■■□□□ 1.19
COMMD4-221ENST00000567935 ARHGEF40Q8TER5 1519 aa22.5■■□□□ 1.19
COMMD4-221ENST00000567935 ARID3CA6NKF2 412 aa22.49■■□□□ 1.19
COMMD4-221ENST00000567935 NEO1Q92859 1461 aa22.48■■□□□ 1.19
COMMD4-221ENST00000567935 MAP3K1Q13233 1512 aa22.47■■□□□ 1.19
COMMD4-221ENST00000567935 SAMD9Q5K651 1589 aa22.45■■□□□ 1.18
COMMD4-221ENST00000567935 ATP10BO94823 1461 aa22.43■■□□□ 1.18
COMMD4-221ENST00000567935 PPARGC1BQ86YN6 1023 aaKnown RBP22.42■■□□□ 1.18
COMMD4-221ENST00000567935 SIGLEC1Q9BZZ2 1709 aa22.41■■□□□ 1.18
COMMD4-221ENST00000567935 FMN1Q68DA7 1419 aa22.4■■□□□ 1.18
COMMD4-221ENST00000567935 FANCAO15360 1455 aa22.37■■□□□ 1.17
COMMD4-221ENST00000567935 FYCO1Q9BQS8 1478 aa22.37■■□□□ 1.17
COMMD4-221ENST00000567935 POGZQ7Z3K3 1410 aa22.36■■□□□ 1.17
COMMD4-221ENST00000567935 YEATS2Q9ULM3 1422 aa22.36■■□□□ 1.17
Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms