RNA–Protein interactions for RNA: ENST00000567704.5

CSPG4P13-202, Transcript of chondroitin sulfate proteoglycan 4 pseudogene 13, humanhuman

BASIC

Gene CSPG4P13, Length 4,801 nt, Biotype transcribed unprocessed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4P13-202ENST00000567704 DDRGK1Q96HY6 314 aa16.55■□□□□ 0.24
CSPG4P13-202ENST00000567704 CHIC2Q9UKJ5 165 aa16.54■□□□□ 0.24
CSPG4P13-202ENST00000567704 PPM1GO15355 546 aaPredicted RBP16.53■□□□□ 0.24
CSPG4P13-202ENST00000567704 EIF4G2P78344 907 aaKnown RBP eCLIP16.53■□□□□ 0.24
CSPG4P13-202ENST00000567704 CECR2Q9BXF3 1484 aa16.53■□□□□ 0.24
CSPG4P13-202ENST00000567704 GOLGA6L2Q8N9W4 650 aaPredicted RBP16.52■□□□□ 0.24
CSPG4P13-202ENST00000567704 ZNF777Q9ULD5 760 aaPredicted RBP16.52■□□□□ 0.23
CSPG4P13-202ENST00000567704 BAZ1BQ9UIG0 1483 aaKnown RBP16.51■□□□□ 0.23
CSPG4P13-202ENST00000567704 ERICH6BQ5W0A0 696 aa16.49■□□□□ 0.23
CSPG4P13-202ENST00000567704 SIN3AQ96ST3 1273 aa16.45■□□□□ 0.22
CSPG4P13-202ENST00000567704 TRIM44Q96DX7 344 aaPredicted RBP16.43■□□□□ 0.22
CSPG4P13-202ENST00000567704 BECN1Q14457 450 aa16.42■□□□□ 0.22
CSPG4P13-202ENST00000567704 NAP1L5Q96NT1 182 aaPredicted RBP16.41■□□□□ 0.22
CSPG4P13-202ENST00000567704 TNIKQ9UKE5 1360 aa16.4■□□□□ 0.22
CSPG4P13-202ENST00000567704 WDR43Q15061 677 aaKnown RBP eCLIP16.4■□□□□ 0.22
CSPG4P13-202ENST00000567704 KDM2AQ9Y2K7 1162 aa16.39■□□□□ 0.21
CSPG4P13-202ENST00000567704 GOLGA3Q08378 1498 aa16.39■□□□□ 0.21
CSPG4P13-202ENST00000567704 SMARCA2P51531 1590 aa16.38■□□□□ 0.21
CSPG4P13-202ENST00000567704 ZBTB4Q9P1Z0 1013 aaPredicted RBP16.37■□□□□ 0.21
CSPG4P13-202ENST00000567704 MROH2BQ7Z745 1585 aa16.36■□□□□ 0.21
CSPG4P13-202ENST00000567704 SLC24A1O60721 1099 aa16.36■□□□□ 0.21
CSPG4P13-202ENST00000567704 RRP7BPQ9NSQ0 103 aa16.35■□□□□ 0.21
CSPG4P13-202ENST00000567704 CCER2I3L3R5 266 aa16.34■□□□□ 0.21
CSPG4P13-202ENST00000567704 EEA1Q15075 1411 aa16.33■□□□□ 0.2
CSPG4P13-202ENST00000567704 FBLN2P98095 1184 aa16.32■□□□□ 0.2
CSPG4P13-202ENST00000567704 MTUS2Q5JR59 1369 aa16.3■□□□□ 0.2
CSPG4P13-202ENST00000567704 RGS3P49796 1198 aa16.3■□□□□ 0.2
CSPG4P13-202ENST00000567704 SMARCA4P51532 1647 aa16.25■□□□□ 0.19
CSPG4P13-202ENST00000567704 NCLP19338 710 aaKnown RBP16.22■□□□□ 0.19
CSPG4P13-202ENST00000567704 KCNH8Q96L42 1107 aa16.22■□□□□ 0.19
CSPG4P13-202ENST00000567704 GOLGA6L22H0YM25 854 aa16.22■□□□□ 0.19
CSPG4P13-202ENST00000567704 ATAD2BQ9ULI0 1458 aa16.22■□□□□ 0.19
CSPG4P13-202ENST00000567704 TNNT2P45379 298 aaPredicted RBP16.2■□□□□ 0.18
CSPG4P13-202ENST00000567704 GRWD1Q9BQ67 446 aaKnown RBP eCLIP16.2■□□□□ 0.18
CSPG4P13-202ENST00000567704 IPO9Q96P70 1041 aaKnown RBP16.17■□□□□ 0.18
CSPG4P13-202ENST00000567704 CHGAP10645 457 aaKnown RBP16.17■□□□□ 0.18
CSPG4P13-202ENST00000567704 CEP164Q9UPV0 1460 aa16.17■□□□□ 0.18
CSPG4P13-202ENST00000567704 CCNB3Q8WWL7 1395 aa16.16■□□□□ 0.18
CSPG4P13-202ENST00000567704 EIF4G1Q04637 1599 aaKnown RBP16.16■□□□□ 0.18
CSPG4P13-202ENST00000567704 PTMAP06454 111 aaKnown RBP16.15■□□□□ 0.18
CSPG4P13-202ENST00000567704 ARID4BQ4LE39 1312 aaPredicted RBP16.15■□□□□ 0.18
CSPG4P13-202ENST00000567704 DNTTIP2Q5QJE6 756 aaKnown RBP16.15■□□□□ 0.18
CSPG4P13-202ENST00000567704 TOP2AP11388 1531 aaKnown RBP16.15■□□□□ 0.18
CSPG4P13-202ENST00000567704 TIMELESSQ9UNS1 1208 aa16.14■□□□□ 0.17
CSPG4P13-202ENST00000567704 WIZO95785 1651 aa16.14■□□□□ 0.17
CSPG4P13-202ENST00000567704 BICRAQ9NZM4 1560 aa16.14■□□□□ 0.17
CSPG4P13-202ENST00000567704 WRNQ14191 1432 aaPredicted RBP eCLIP16.13■□□□□ 0.17
CSPG4P13-202ENST00000567704 L1TD1Q5T7N2 865 aaKnown RBP16.12■□□□□ 0.17
CSPG4P13-202ENST00000567704 CARD11Q9BXL7 1154 aa16.11■□□□□ 0.17
CSPG4P13-202ENST00000567704 ERCC6Q03468 1493 aa16.11■□□□□ 0.17
CSPG4P13-202ENST00000567704 TSPY4P0CV99 314 aa16.11■□□□□ 0.17
CSPG4P13-202ENST00000567704 TSPY10P0CW01 314 aa16.11■□□□□ 0.17
CSPG4P13-202ENST00000567704 SOGA1O94964 1423 aa16.11■□□□□ 0.17
CSPG4P13-202ENST00000567704 MYH16Q9H6N6 1097 aa16.09■□□□□ 0.17
CSPG4P13-202ENST00000567704 HSPA5P11021 654 aaKnown RBP16.09■□□□□ 0.17
CSPG4P13-202ENST00000567704 RGL3Q3MIN7 710 aa16.09■□□□□ 0.17
CSPG4P13-202ENST00000567704 CCDC88BA6NC98 1476 aa16.09■□□□□ 0.17
CSPG4P13-202ENST00000567704 TCERG1O14776 1098 aaKnown RBP16.07■□□□□ 0.16
CSPG4P13-202ENST00000567704 SPRYD3Q8NCJ5 442 aa16.07■□□□□ 0.16
CSPG4P13-202ENST00000567704 FRAT1Q92837 279 aaPredicted RBP16.07■□□□□ 0.16
CSPG4P13-202ENST00000567704 PNNQ9H307 717 aaKnown RBP16.06■□□□□ 0.16
CSPG4P13-202ENST00000567704 FANCIQ9NVI1 1328 aa16.06■□□□□ 0.16
CSPG4P13-202ENST00000567704 NEUROD2Q15784 382 aa16.06■□□□□ 0.16
CSPG4P13-202ENST00000567704 KANK4Q5T7N3 995 aaPredicted RBP16.06■□□□□ 0.16
CSPG4P13-202ENST00000567704 KNSTRNQ9Y448 316 aa16.05■□□□□ 0.16
CSPG4P13-202ENST00000567704 NCAPD3P42695 1498 aa16.05■□□□□ 0.16
CSPG4P13-202ENST00000567704 TPRNQ4KMQ1 711 aa16.04■□□□□ 0.16
CSPG4P13-202ENST00000567704 VPS8Q8N3P4 1428 aa16.03■□□□□ 0.16
CSPG4P13-202ENST00000567704 CC2D1BQ5T0F9 858 aaKnown RBP16.03■□□□□ 0.16
CSPG4P13-202ENST00000567704 PDS5BQ9NTI5 1447 aa16.03■□□□□ 0.16
CSPG4P13-202ENST00000567704 FTSJ3Q8IY81 847 aaKnown RBP16.02■□□□□ 0.16
CSPG4P13-202ENST00000567704 SETD5Q9C0A6 1442 aa16.02■□□□□ 0.16
CSPG4P13-202ENST00000567704 SLKQ9H2G2 1235 aaPredicted RBP16.02■□□□□ 0.16
CSPG4P13-202ENST00000567704 GZF1Q9H116 711 aaPredicted RBP16.02■□□□□ 0.15
CSPG4P13-202ENST00000567704 HSP90AB1P08238 724 aaKnown RBP16.01■□□□□ 0.15
CSPG4P13-202ENST00000567704 PPP1R15AO75807 674 aaPredicted RBP16.01■□□□□ 0.15
CSPG4P13-202ENST00000567704 RCAN3Q9UKA8 241 aa16■□□□□ 0.15
CSPG4P13-202ENST00000567704 UNC13AQ9UPW8 1703 aa16■□□□□ 0.15
CSPG4P13-202ENST00000567704 RAB3GAP2Q9H2M9 1393 aa15.99■□□□□ 0.15
CSPG4P13-202ENST00000567704 CADPSQ9ULU8 1353 aa15.99■□□□□ 0.15
CSPG4P13-202ENST00000567704 MSNP26038 577 aaKnown RBP15.99■□□□□ 0.15
CSPG4P13-202ENST00000567704 PLCB2Q00722 1185 aa15.98■□□□□ 0.15
CSPG4P13-202ENST00000567704 NUDCQ9Y266 331 aa15.97■□□□□ 0.15
CSPG4P13-202ENST00000567704 HSCBQ8IWL3 235 aa15.96■□□□□ 0.15
CSPG4P13-202ENST00000567704 USP35Q9P2H5 1018 aa15.96■□□□□ 0.15
CSPG4P13-202ENST00000567704 CC2D2AQ9P2K1 1620 aa15.96■□□□□ 0.15
CSPG4P13-202ENST00000567704 ARID3AQ99856 593 aa15.94■□□□□ 0.14
CSPG4P13-202ENST00000567704 CDK11BP21127 795 aaKnown RBP15.92■□□□□ 0.14
CSPG4P13-202ENST00000567704 GSE1Q14687 1217 aa15.92■□□□□ 0.14
CSPG4P13-202ENST00000567704 DHX57Q6P158 1386 aaKnown RBP15.92■□□□□ 0.14
CSPG4P13-202ENST00000567704 KIF27Q86VH2 1401 aa15.92■□□□□ 0.14
CSPG4P13-202ENST00000567704 SLC4A3P48751 1232 aa15.91■□□□□ 0.14
CSPG4P13-202ENST00000567704 CFAP53Q96M91 514 aa15.91■□□□□ 0.14
CSPG4P13-202ENST00000567704 RSPH6AQ9H0K4 717 aa15.91■□□□□ 0.14
CSPG4P13-202ENST00000567704 GOLGA6L3A6NEY3 463 aa15.9■□□□□ 0.14
CSPG4P13-202ENST00000567704 CDCA8Q53HL2 280 aa15.9■□□□□ 0.14
CSPG4P13-202ENST00000567704 VSIG10Q8N0Z9 540 aa15.9■□□□□ 0.14
CSPG4P13-202ENST00000567704 PDE4AP27815 886 aa15.89■□□□□ 0.13
CSPG4P13-202ENST00000567704 HSP90AA2PQ14568 343 aaPredicted RBP15.89■□□□□ 0.13
CSPG4P13-202ENST00000567704 FOXD1Q16676 465 aa15.88■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 24.2 ms