RNA–Protein interactions for RNA: ENST00000567635.5

SF3B3-209, Transcript of splicing factor 3b subunit 3, human

TSL 5

Gene SF3B3, Length 630 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SF3B3-209	ENST00000567635	TRH	P20396	242 aa	Predicted RBP	11.86	□□□□□ -0.51
SF3B3-209	ENST00000567635	SHROOM2	Q13796	1616 aa		11.86	□□□□□ -0.51
SF3B3-209	ENST00000567635	CUL7	Q14999	1698 aa		11.84	□□□□□ -0.51
SF3B3-209	ENST00000567635	ERCC6L2	Q5T890	1561 aa		11.84	□□□□□ -0.51
SF3B3-209	ENST00000567635	CARMIL1	Q5VZK9	1371 aa		11.82	□□□□□ -0.52
SF3B3-209	ENST00000567635	PRG4	Q92954	1404 aa	Predicted RBP	11.82	□□□□□ -0.52
SF3B3-209	ENST00000567635	KIAA0586	Q9BVV6	1533 aa		11.79	□□□□□ -0.52
SF3B3-209	ENST00000567635	RUSC2	Q8N2Y8	1516 aa		11.78	□□□□□ -0.52
SF3B3-209	ENST00000567635	RAPGEF2	Q9Y4G8	1499 aa		11.71	□□□□□ -0.53
SF3B3-209	ENST00000567635	NPM1	P06748	294 aa	Known RBP eCLIP	11.7	□□□□□ -0.54
SF3B3-209	ENST00000567635	CARMIL2	Q6F5E8	1435 aa		11.69	□□□□□ -0.54
SF3B3-209	ENST00000567635	IQGAP2	Q13576	1575 aa		11.68	□□□□□ -0.54
SF3B3-209	ENST00000567635	PTPRG	P23470	1445 aa		11.67	□□□□□ -0.54
SF3B3-209	ENST00000567635	TTBK1	Q5TCY1	1321 aa	Predicted RBP	11.66	□□□□□ -0.54
SF3B3-209	ENST00000567635	TNIK	Q9UKE5	1360 aa		11.66	□□□□□ -0.54
SF3B3-209	ENST00000567635	ADCY10	Q96PN6	1610 aa		11.64	□□□□□ -0.55
SF3B3-209	ENST00000567635	KIF13A	Q9H1H9	1805 aa		11.64	□□□□□ -0.55
SF3B3-209	ENST00000567635	CSRNP3	Q8WYN3	585 aa		11.63	□□□□□ -0.55
SF3B3-209	ENST00000567635	CTTNBP2	Q8WZ74	1663 aa		11.62	□□□□□ -0.55
SF3B3-209	ENST00000567635	UGGT2	Q9NYU1	1516 aa		11.62	□□□□□ -0.55
SF3B3-209	ENST00000567635	PRX	Q9BXM0	1461 aa		11.62	□□□□□ -0.55
SF3B3-209	ENST00000567635	DISP1	Q96F81	1524 aa		11.61	□□□□□ -0.55
SF3B3-209	ENST00000567635	FAM69C	Q0P6D2	419 aa		11.6	□□□□□ -0.55
SF3B3-209	ENST00000567635	MAPKBP1	O60336	1514 aa		11.59	□□□□□ -0.55
SF3B3-209	ENST00000567635	ABCC10	Q5T3U5	1492 aa		11.57	□□□□□ -0.56
SF3B3-209	ENST00000567635	UACA	Q9BZF9	1416 aa		11.57	□□□□□ -0.56
SF3B3-209	ENST00000567635	EEA1	Q15075	1411 aa		11.56	□□□□□ -0.56
SF3B3-209	ENST00000567635	KIAA0556	O60303	1618 aa		11.56	□□□□□ -0.56
SF3B3-209	ENST00000567635	UHRF1BP1L	A0JNW5	1464 aa		11.56	□□□□□ -0.56
SF3B3-209	ENST00000567635	GOLGA3	Q08378	1498 aa		11.56	□□□□□ -0.56
SF3B3-209	ENST00000567635	ABCC2	Q92887	1545 aa		11.55	□□□□□ -0.56
SF3B3-209	ENST00000567635	FAM9A	Q8IZU1	332 aa	Predicted RBP	11.55	□□□□□ -0.56
SF3B3-209	ENST00000567635	TSPOAP1	O95153	1857 aa		11.54	□□□□□ -0.56
SF3B3-209	ENST00000567635	DIP2B	Q9P265	1576 aa		11.53	□□□□□ -0.56
SF3B3-209	ENST00000567635	ASXL2	Q76L83	1435 aa		11.52	□□□□□ -0.57
SF3B3-209	ENST00000567635	PLB1	Q6P1J6	1458 aa		11.51	□□□□□ -0.57
SF3B3-209	ENST00000567635	P3H3	Q8IVL6	736 aa		11.5	□□□□□ -0.57
SF3B3-209	ENST00000567635	KDM5B	Q9UGL1	1544 aa		11.5	□□□□□ -0.57
SF3B3-209	ENST00000567635	ZCCHC11	Q5TAX3	1644 aa	Known RBP	11.49	□□□□□ -0.57
SF3B3-209	ENST00000567635	ABCA8	O94911	1581 aa		11.46	□□□□□ -0.57
SF3B3-209	ENST00000567635	RANGAP1	P46060	587 aa	Predicted RBP	11.46	□□□□□ -0.57
SF3B3-209	ENST00000567635	PLPPR3	Q6T4P5	718 aa		11.46	□□□□□ -0.57
SF3B3-209	ENST00000567635	GLI2	P10070	1586 aa		11.45	□□□□□ -0.58
SF3B3-209	ENST00000567635	KIF21B	O75037	1637 aa		11.45	□□□□□ -0.58
SF3B3-209	ENST00000567635	FOXD1	Q16676	465 aa		11.44	□□□□□ -0.58
SF3B3-209	ENST00000567635	SAMD9	Q5K651	1589 aa		11.43	□□□□□ -0.58
SF3B3-209	ENST00000567635	KCNH8	Q96L42	1107 aa		11.43	□□□□□ -0.58
SF3B3-209	ENST00000567635	EPRS	P07814	1512 aa	Known RBP	11.43	□□□□□ -0.58
SF3B3-209	ENST00000567635	UBTF	P17480	764 aa	Known RBP	11.42	□□□□□ -0.58
SF3B3-209	ENST00000567635	EHMT2	Q96KQ7	1210 aa		11.42	□□□□□ -0.58
SF3B3-209	ENST00000567635	PPRC1	Q5VV67	1664 aa	Known RBP	11.41	□□□□□ -0.58
SF3B3-209	ENST00000567635	WDR7	Q9Y4E6	1490 aa		11.41	□□□□□ -0.58
SF3B3-209	ENST00000567635	KDM6B	O15054	1643 aa		11.4	□□□□□ -0.58
SF3B3-209	ENST00000567635	MAP3K4	Q9Y6R4	1608 aa		11.4	□□□□□ -0.58
SF3B3-209	ENST00000567635	ARID3C	A6NKF2	412 aa		11.39	□□□□□ -0.59
SF3B3-209	ENST00000567635	ATP10B	O94823	1461 aa		11.38	□□□□□ -0.59
SF3B3-209	ENST00000567635	RAPGEF6	Q8TEU7	1601 aa		11.38	□□□□□ -0.59
SF3B3-209	ENST00000567635	HNRNPUL2-BSCL2	H3BQZ7	746 aa	Predicted RBP	11.37	□□□□□ -0.59
SF3B3-209	ENST00000567635	HNRNPUL2	Q1KMD3	747 aa	Known RBP	11.37	□□□□□ -0.59
SF3B3-209	ENST00000567635	FHOD3	Q2V2M9	1422 aa		11.36	□□□□□ -0.59
SF3B3-209	ENST00000567635	TEX14	Q8IWB6	1497 aa		11.36	□□□□□ -0.59
SF3B3-209	ENST00000567635	CFAP43	Q8NDM7	1665 aa		11.36	□□□□□ -0.59
SF3B3-209	ENST00000567635	CD109	Q6YHK3	1445 aa		11.35	□□□□□ -0.59
SF3B3-209	ENST00000567635	EFCAB5	A4FU69	1503 aa		11.35	□□□□□ -0.59
SF3B3-209	ENST00000567635	PLEKHD1	A6NEE1	506 aa		11.32	□□□□□ -0.6
SF3B3-209	ENST00000567635	NUP153	P49790	1475 aa	Known RBP	11.32	□□□□□ -0.6
SF3B3-209	ENST00000567635	COL17A1	Q9UMD9	1497 aa	Predicted RBP	11.32	□□□□□ -0.6
SF3B3-209	ENST00000567635	MAGI3	Q5TCQ9	1506 aa		11.31	□□□□□ -0.6
SF3B3-209	ENST00000567635	ATP1B4	Q9UN42	357 aa	Predicted RBP	11.29	□□□□□ -0.6
SF3B3-209	ENST00000567635	ABCA9	Q8IUA7	1624 aa		11.28	□□□□□ -0.6
SF3B3-209	ENST00000567635	FMN1	Q68DA7	1419 aa		11.27	□□□□□ -0.6
SF3B3-209	ENST00000567635	ARHGAP35	Q9NRY4	1499 aa		11.27	□□□□□ -0.6
SF3B3-209	ENST00000567635	KDM4F	A0A1W2PPD8	638 aa		11.26	□□□□□ -0.61
SF3B3-209	ENST00000567635	PHLDB1	Q86UU1	1377 aa		11.26	□□□□□ -0.61
SF3B3-209	ENST00000567635	CDK11A	Q9UQ88	783 aa	Predicted RBP	11.24	□□□□□ -0.61
SF3B3-209	ENST00000567635	ARAP3	Q8WWN8	1544 aa		11.24	□□□□□ -0.61
SF3B3-209	ENST00000567635	CDK13	Q14004	1512 aa	Known RBP	11.23	□□□□□ -0.61
SF3B3-209	ENST00000567635	HECW1	Q76N89	1606 aa		11.22	□□□□□ -0.61
SF3B3-209	ENST00000567635	NEO1	Q92859	1461 aa		11.21	□□□□□ -0.61
SF3B3-209	ENST00000567635	GEMIN5	Q8TEQ6	1508 aa	Known RBP eCLIP	11.19	□□□□□ -0.62
SF3B3-209	ENST00000567635	RAPGEF3	O95398	923 aa		11.19	□□□□□ -0.62
SF3B3-209	ENST00000567635	LRRIQ1	Q96JM4	1722 aa		11.18	□□□□□ -0.62
SF3B3-209	ENST00000567635	ADGRL1	O94910	1474 aa		11.17	□□□□□ -0.62
SF3B3-209	ENST00000567635	CLIP1	P30622	1438 aa		11.17	□□□□□ -0.62
SF3B3-209	ENST00000567635	AKNA	Q7Z591	1439 aa		11.17	□□□□□ -0.62
SF3B3-209	ENST00000567635	CASKIN1	Q8WXD9	1431 aa		11.17	□□□□□ -0.62
SF3B3-209	ENST00000567635	TTC37	Q6PGP7	1564 aa		11.16	□□□□□ -0.62
SF3B3-209	ENST00000567635	FANCA	O15360	1455 aa		11.16	□□□□□ -0.62
SF3B3-209	ENST00000567635	CFAP74	Q9C0B2	1584 aa		11.16	□□□□□ -0.62
SF3B3-209	ENST00000567635	PLCH2	O75038	1416 aa		11.15	□□□□□ -0.62
SF3B3-209	ENST00000567635	DENND4B	O75064	1496 aa	Predicted RBP	11.14	□□□□□ -0.63
SF3B3-209	ENST00000567635	EFCAB2	Q5VUJ9	269 aa		11.14	□□□□□ -0.63
SF3B3-209	ENST00000567635	TRO	Q12816	1431 aa	Predicted RBP	11.14	□□□□□ -0.63
SF3B3-209	ENST00000567635	MYO5C	Q9NQX4	1742 aa		11.14	□□□□□ -0.63
SF3B3-209	ENST00000567635	CCDC18	Q5T9S5	1454 aa		11.12	□□□□□ -0.63
SF3B3-209	ENST00000567635	RICTOR	Q6R327	1708 aa		11.12	□□□□□ -0.63
SF3B3-209	ENST00000567635	PCF11	O94913	1555 aa	Known RBP	11.12	□□□□□ -0.63
SF3B3-209	ENST00000567635	FYCO1	Q9BQS8	1478 aa		11.12	□□□□□ -0.63
SF3B3-209	ENST00000567635	FRMPD1	Q5SYB0	1578 aa		11.11	□□□□□ -0.63
SF3B3-209	ENST00000567635	KIF14	Q15058	1648 aa		11.11	□□□□□ -0.63

Retrieved 100 of 20,778 RNA–protein pairs in 47.9 ms