RNA–Protein interactions for RNA: ENST00000566756.5

CMTM3-213, Transcript of CKLF like MARVEL transmembrane domain containing 3, humanhuman

TSL 2

Gene CMTM3, Length 1,950 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CMTM3-213ENST00000566756 TTBK1Q5TCY1 1321 aaPredicted RBP25.23■■□□□ 1.63
CMTM3-213ENST00000566756 ARHGAP35Q9NRY4 1499 aa25.23■■□□□ 1.63
CMTM3-213ENST00000566756 ZNF608Q9ULD9 1512 aaPredicted RBP25.22■■□□□ 1.63
CMTM3-213ENST00000566756 FHAD1B1AJZ9 1412 aa25.21■■□□□ 1.63
CMTM3-213ENST00000566756 ADAMTS12P58397 1594 aa25.2■■□□□ 1.62
CMTM3-213ENST00000566756 RANGAP1P46060 587 aaPredicted RBP25.19■■□□□ 1.62
CMTM3-213ENST00000566756 EIF4G3O43432 1585 aaKnown RBP25.18■■□□□ 1.62
CMTM3-213ENST00000566756 APLP2Q06481 763 aa25.13■■□□□ 1.61
CMTM3-213ENST00000566756 DIEXFQ68CQ4 756 aaKnown RBP25.13■■□□□ 1.61
CMTM3-213ENST00000566756 EFCAB5A4FU69 1503 aa25.11■■□□□ 1.61
CMTM3-213ENST00000566756 SCAF1Q9H7N4 1312 aaKnown RBP25.07■■□□□ 1.6
CMTM3-213ENST00000566756 MAGI1Q96QZ7 1491 aaPredicted RBP25.05■■□□□ 1.6
CMTM3-213ENST00000566756 SNAPC4Q5SXM2 1469 aa25.04■■□□□ 1.6
CMTM3-213ENST00000566756 ZNF316A6NFI3 1004 aaPredicted RBP25.02■■□□□ 1.6
CMTM3-213ENST00000566756 SAMD9Q5K651 1589 aa25■■□□□ 1.59
CMTM3-213ENST00000566756 ACIN1Q9UKV3 1341 aaKnown RBP24.97■■□□□ 1.59
CMTM3-213ENST00000566756 HNRNPUL2Q1KMD3 747 aaKnown RBP24.95■■□□□ 1.58
CMTM3-213ENST00000566756 GRIN2AQ12879 1464 aa24.95■■□□□ 1.58
CMTM3-213ENST00000566756 IQGAP2Q13576 1575 aa24.94■■□□□ 1.58
CMTM3-213ENST00000566756 SYNJ2O15056 1496 aa24.94■■□□□ 1.58
CMTM3-213ENST00000566756 CLSPNQ9HAW4 1339 aa24.94■■□□□ 1.58
CMTM3-213ENST00000566756 PELP1Q8IZL8 1130 aaKnown RBP24.93■■□□□ 1.58
CMTM3-213ENST00000566756 MAP3K1Q13233 1512 aa24.93■■□□□ 1.58
CMTM3-213ENST00000566756 CENPBP07199 599 aaPredicted RBP24.91■■□□□ 1.58
CMTM3-213ENST00000566756 FHOD3Q2V2M9 1422 aa24.89■■□□□ 1.57
CMTM3-213ENST00000566756 KIAA0586Q9BVV6 1533 aa24.89■■□□□ 1.57
CMTM3-213ENST00000566756 FMN1Q68DA7 1419 aa24.87■■□□□ 1.57
CMTM3-213ENST00000566756 UGGT2Q9NYU1 1516 aa24.86■■□□□ 1.57
CMTM3-213ENST00000566756 RRBP1Q9P2E9 1410 aaKnown RBP24.85■■□□□ 1.57
CMTM3-213ENST00000566756 PCF11O94913 1555 aaKnown RBP24.84■■□□□ 1.57
CMTM3-213ENST00000566756 P3H3Q8IVL6 736 aa24.84■■□□□ 1.57
CMTM3-213ENST00000566756 FYCO1Q9BQS8 1478 aa24.83■■□□□ 1.57
CMTM3-213ENST00000566756 CASKIN1Q8WXD9 1431 aa24.83■■□□□ 1.56
CMTM3-213ENST00000566756 TIAM1Q13009 1591 aa24.82■■□□□ 1.56
CMTM3-213ENST00000566756 CHMP7Q8WUX9 453 aaPredicted RBP24.82■■□□□ 1.56
CMTM3-213ENST00000566756 NEUROD1Q13562 356 aa24.81■■□□□ 1.56
CMTM3-213ENST00000566756 CEP170Q5SW79 1584 aa24.79■■□□□ 1.56
CMTM3-213ENST00000566756 CFAP43Q8NDM7 1665 aa24.79■■□□□ 1.56
CMTM3-213ENST00000566756 NUP160Q12769 1436 aa24.78■■□□□ 1.56
CMTM3-213ENST00000566756 KANK4Q5T7N3 995 aaPredicted RBP24.76■■□□□ 1.55
CMTM3-213ENST00000566756 DHX57Q6P158 1386 aaKnown RBP24.72■■□□□ 1.55
CMTM3-213ENST00000566756 KIAA0556O60303 1618 aa24.69■■□□□ 1.54
CMTM3-213ENST00000566756 LRRC9Q6ZRR7 1453 aa24.69■■□□□ 1.54
CMTM3-213ENST00000566756 DISP1Q96F81 1524 aa24.68■■□□□ 1.54
CMTM3-213ENST00000566756 FBLN2P98095 1184 aa24.67■■□□□ 1.54
CMTM3-213ENST00000566756 CCNB3Q8WWL7 1395 aa24.65■■□□□ 1.54
CMTM3-213ENST00000566756 CHD1O14646 1710 aa24.64■■□□□ 1.53
CMTM3-213ENST00000566756 LRRIQ1Q96JM4 1722 aa24.64■■□□□ 1.53
CMTM3-213ENST00000566756 HECW1Q76N89 1606 aa24.6■■□□□ 1.53
CMTM3-213ENST00000566756 ATP1B4Q9UN42 357 aaPredicted RBP24.58■■□□□ 1.53
CMTM3-213ENST00000566756 CCDC18Q5T9S5 1454 aa24.56■■□□□ 1.52
CMTM3-213ENST00000566756 JPH4Q96JJ6 628 aa24.56■■□□□ 1.52
CMTM3-213ENST00000566756 GTF3C3Q9Y5Q9 886 aa24.56■■□□□ 1.52
CMTM3-213ENST00000566756 CARMIL2Q6F5E8 1435 aa24.55■■□□□ 1.52
CMTM3-213ENST00000566756 MIER1Q8N108 512 aa24.51■■□□□ 1.51
CMTM3-213ENST00000566756 EPRSP07814 1512 aaKnown RBP24.48■■□□□ 1.51
CMTM3-213ENST00000566756 RAPGEF6Q8TEU7 1601 aa24.48■■□□□ 1.51
CMTM3-213ENST00000566756 EHBP1L1Q8N3D4 1523 aa24.46■■□□□ 1.51
CMTM3-213ENST00000566756 SHROOM2Q13796 1616 aa24.46■■□□□ 1.51
CMTM3-213ENST00000566756 MTUS2Q5JR59 1369 aa24.45■■□□□ 1.5
CMTM3-213ENST00000566756 PHLDB1Q86UU1 1377 aa24.44■■□□□ 1.5
CMTM3-213ENST00000566756 SUPT6HQ7KZ85 1726 aaKnown RBP24.42■■□□□ 1.5
CMTM3-213ENST00000566756 NUP153P49790 1475 aaKnown RBP24.4■■□□□ 1.5
CMTM3-213ENST00000566756 MAGI3Q5TCQ9 1506 aa24.38■■□□□ 1.49
CMTM3-213ENST00000566756 PRG4Q92954 1404 aaPredicted RBP24.38■■□□□ 1.49
CMTM3-213ENST00000566756 CDK13Q14004 1512 aaKnown RBP24.36■■□□□ 1.49
CMTM3-213ENST00000566756 ARHGEF11O15085 1522 aa24.36■■□□□ 1.49
CMTM3-213ENST00000566756 RAB3GAP2Q9H2M9 1393 aa24.36■■□□□ 1.49
CMTM3-213ENST00000566756 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP24.36■■□□□ 1.49
CMTM3-213ENST00000566756 CLASP1Q7Z460 1538 aa24.35■■□□□ 1.49
CMTM3-213ENST00000566756 NCOA2Q15596 1464 aa24.35■■□□□ 1.49
CMTM3-213ENST00000566756 SETD5Q9C0A6 1442 aa24.35■■□□□ 1.49
CMTM3-213ENST00000566756 ABCA8O94911 1581 aa24.34■■□□□ 1.49
CMTM3-213ENST00000566756 MAPKBP1O60336 1514 aa24.33■■□□□ 1.48
CMTM3-213ENST00000566756 PLB1Q6P1J6 1458 aa24.32■■□□□ 1.48
CMTM3-213ENST00000566756 FGD6Q6ZV73 1430 aa24.29■■□□□ 1.48
CMTM3-213ENST00000566756 YTHDC1Q96MU7 727 aaKnown RBP24.28■■□□□ 1.48
CMTM3-213ENST00000566756 MYOM3Q5VTT5 1437 aa24.28■■□□□ 1.48
CMTM3-213ENST00000566756 PTPRGP23470 1445 aa24.26■■□□□ 1.47
CMTM3-213ENST00000566756 CDK11AQ9UQ88 783 aaPredicted RBP24.25■■□□□ 1.47
CMTM3-213ENST00000566756 ITGAEP38570 1179 aa24.2■■□□□ 1.46
CMTM3-213ENST00000566756 TIMELESSQ9UNS1 1208 aa24.2■■□□□ 1.46
CMTM3-213ENST00000566756 TROQ12816 1431 aaPredicted RBP24.18■■□□□ 1.46
CMTM3-213ENST00000566756 FAM50AQ14320 339 aaKnown RBP24.18■■□□□ 1.46
CMTM3-213ENST00000566756 ADCY10Q96PN6 1610 aa24.18■■□□□ 1.46
CMTM3-213ENST00000566756 ERCC6L2Q5T890 1561 aa24.18■■□□□ 1.46
CMTM3-213ENST00000566756 ARID3CA6NKF2 412 aa24.17■■□□□ 1.46
CMTM3-213ENST00000566756 MIA2Q96PC5 1412 aa24.17■■□□□ 1.46
CMTM3-213ENST00000566756 PTPN23Q9H3S7 1636 aa24.16■■□□□ 1.46
CMTM3-213ENST00000566756 ATP10BO94823 1461 aa24.16■■□□□ 1.46
CMTM3-213ENST00000566756 TCOF1Q13428 1488 aaKnown RBP24.15■■□□□ 1.46
CMTM3-213ENST00000566756 UACAQ9BZF9 1416 aa24.14■■□□□ 1.45
CMTM3-213ENST00000566756 ABCC2Q92887 1545 aa24.08■■□□□ 1.44
CMTM3-213ENST00000566756 ITSN2Q9NZM3 1697 aa24.06■■□□□ 1.44
CMTM3-213ENST00000566756 PLEKHD1A6NEE1 506 aa24.05■■□□□ 1.44
CMTM3-213ENST00000566756 UHRF1BP1LA0JNW5 1464 aa24.04■■□□□ 1.44
CMTM3-213ENST00000566756 KIF14Q15058 1648 aa24.04■■□□□ 1.44
CMTM3-213ENST00000566756 OSCARQ8IYS5 282 aa24.01■■□□□ 1.43
CMTM3-213ENST00000566756 PTPRKQ15262 1439 aa23.99■■□□□ 1.43
CMTM3-213ENST00000566756 HFM1A2PYH4 1435 aa23.98■■□□□ 1.43
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms