RNA–Protein interactions for RNA: ENST00000565393.2

TCF4-228, Transcript of transcription factor 4, humanhuman

TSL 1 (best)

Gene TCF4, Length 314 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCF4-228ENST00000565393 ERCC6L2Q5T890 1561 aa10.98□□□□□ -0.65
TCF4-228ENST00000565393 CARMIL1Q5VZK9 1371 aa10.96□□□□□ -0.65
TCF4-228ENST00000565393 KIAA0586Q9BVV6 1533 aa10.92□□□□□ -0.66
TCF4-228ENST00000565393 FAM69CQ0P6D2 419 aa10.91□□□□□ -0.66
TCF4-228ENST00000565393 SHROOM2Q13796 1616 aa10.89□□□□□ -0.67
TCF4-228ENST00000565393 AEBP2Q6ZN18 517 aaPredicted RBP10.89□□□□□ -0.67
TCF4-228ENST00000565393 PTPRGP23470 1445 aa10.88□□□□□ -0.67
TCF4-228ENST00000565393 CARMIL2Q6F5E8 1435 aa10.86□□□□□ -0.67
TCF4-228ENST00000565393 RUSC2Q8N2Y8 1516 aa10.84□□□□□ -0.67
TCF4-228ENST00000565393 CUL7Q14999 1698 aa10.83□□□□□ -0.68
TCF4-228ENST00000565393 TNIKQ9UKE5 1360 aa10.83□□□□□ -0.68
TCF4-228ENST00000565393 RAPGEF2Q9Y4G8 1499 aa10.81□□□□□ -0.68
TCF4-228ENST00000565393 FAM9AQ8IZU1 332 aaPredicted RBP10.81□□□□□ -0.68
TCF4-228ENST00000565393 CSRNP3Q8WYN3 585 aa10.78□□□□□ -0.68
TCF4-228ENST00000565393 ABCC10Q5T3U5 1492 aa10.78□□□□□ -0.68
TCF4-228ENST00000565393 P3H3Q8IVL6 736 aa10.76□□□□□ -0.69
TCF4-228ENST00000565393 UACAQ9BZF9 1416 aa10.75□□□□□ -0.69
TCF4-228ENST00000565393 IQGAP2Q13576 1575 aa10.75□□□□□ -0.69
TCF4-228ENST00000565393 RANGAP1P46060 587 aaPredicted RBP10.75□□□□□ -0.69
TCF4-228ENST00000565393 ADCY10Q96PN6 1610 aa10.74□□□□□ -0.69
TCF4-228ENST00000565393 KCNH8Q96L42 1107 aa10.73□□□□□ -0.69
TCF4-228ENST00000565393 MAPKBP1O60336 1514 aa10.73□□□□□ -0.69
TCF4-228ENST00000565393 DISP1Q96F81 1524 aa10.73□□□□□ -0.69
TCF4-228ENST00000565393 ASXL2Q76L83 1435 aa10.72□□□□□ -0.69
TCF4-228ENST00000565393 ABCC2Q92887 1545 aa10.72□□□□□ -0.69
TCF4-228ENST00000565393 PLB1Q6P1J6 1458 aa10.7□□□□□ -0.7
TCF4-228ENST00000565393 ARID3CA6NKF2 412 aa10.7□□□□□ -0.7
TCF4-228ENST00000565393 UGGT2Q9NYU1 1516 aa10.69□□□□□ -0.7
TCF4-228ENST00000565393 UHRF1BP1LA0JNW5 1464 aa10.69□□□□□ -0.7
TCF4-228ENST00000565393 EHMT2Q96KQ7 1210 aa10.69□□□□□ -0.7
TCF4-228ENST00000565393 PRXQ9BXM0 1461 aa10.68□□□□□ -0.7
TCF4-228ENST00000565393 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP10.68□□□□□ -0.7
TCF4-228ENST00000565393 HNRNPUL2Q1KMD3 747 aaKnown RBP10.68□□□□□ -0.7
TCF4-228ENST00000565393 GOLGA3Q08378 1498 aa10.68□□□□□ -0.7
TCF4-228ENST00000565393 DIP2BQ9P265 1576 aa10.67□□□□□ -0.7
TCF4-228ENST00000565393 KIF13AQ9H1H9 1805 aa10.65□□□□□ -0.71
TCF4-228ENST00000565393 KDM5BQ9UGL1 1544 aa10.64□□□□□ -0.71
TCF4-228ENST00000565393 KIAA0556O60303 1618 aa10.63□□□□□ -0.71
TCF4-228ENST00000565393 UBTFP17480 764 aaKnown RBP10.62□□□□□ -0.71
TCF4-228ENST00000565393 KDM4FA0A1W2PPD8 638 aa10.61□□□□□ -0.71
TCF4-228ENST00000565393 CHIC1Q5VXU3 224 aa10.61□□□□□ -0.71
TCF4-228ENST00000565393 EPRSP07814 1512 aaKnown RBP10.61□□□□□ -0.71
TCF4-228ENST00000565393 EEA1Q15075 1411 aa10.6□□□□□ -0.71
TCF4-228ENST00000565393 KDM6BO15054 1643 aa10.6□□□□□ -0.71
TCF4-228ENST00000565393 ATP1B4Q9UN42 357 aaPredicted RBP10.59□□□□□ -0.71
TCF4-228ENST00000565393 GLI2P10070 1586 aa10.59□□□□□ -0.71
TCF4-228ENST00000565393 CD109Q6YHK3 1445 aa10.58□□□□□ -0.72
TCF4-228ENST00000565393 TSPOAP1O95153 1857 aa10.58□□□□□ -0.72
TCF4-228ENST00000565393 WDR7Q9Y4E6 1490 aa10.58□□□□□ -0.72
TCF4-228ENST00000565393 PLEKHD1A6NEE1 506 aa10.57□□□□□ -0.72
TCF4-228ENST00000565393 TEX14Q8IWB6 1497 aa10.56□□□□□ -0.72
TCF4-228ENST00000565393 ZCCHC11Q5TAX3 1644 aaKnown RBP10.56□□□□□ -0.72
TCF4-228ENST00000565393 ATP10BO94823 1461 aa10.55□□□□□ -0.72
TCF4-228ENST00000565393 COL17A1Q9UMD9 1497 aaPredicted RBP10.55□□□□□ -0.72
TCF4-228ENST00000565393 CTTNBP2Q8WZ74 1663 aa10.55□□□□□ -0.72
TCF4-228ENST00000565393 ABCA8O94911 1581 aa10.55□□□□□ -0.72
TCF4-228ENST00000565393 FHOD3Q2V2M9 1422 aa10.52□□□□□ -0.73
TCF4-228ENST00000565393 RAPGEF3O95398 923 aa10.5□□□□□ -0.73
TCF4-228ENST00000565393 MAGI3Q5TCQ9 1506 aa10.49□□□□□ -0.73
TCF4-228ENST00000565393 MAP3K4Q9Y6R4 1608 aa10.49□□□□□ -0.73
TCF4-228ENST00000565393 PPRC1Q5VV67 1664 aaKnown RBP10.47□□□□□ -0.73
TCF4-228ENST00000565393 CDK11AQ9UQ88 783 aaPredicted RBP10.46□□□□□ -0.73
TCF4-228ENST00000565393 PHLDB1Q86UU1 1377 aa10.46□□□□□ -0.74
TCF4-228ENST00000565393 SAMD9Q5K651 1589 aa10.45□□□□□ -0.74
TCF4-228ENST00000565393 NUP153P49790 1475 aaKnown RBP10.45□□□□□ -0.74
TCF4-228ENST00000565393 ARID4BQ4LE39 1312 aaPredicted RBP10.45□□□□□ -0.74
TCF4-228ENST00000565393 RAPGEF6Q8TEU7 1601 aa10.44□□□□□ -0.74
TCF4-228ENST00000565393 ADGRL1O94910 1474 aa10.44□□□□□ -0.74
TCF4-228ENST00000565393 CFAP43Q8NDM7 1665 aa10.42□□□□□ -0.74
TCF4-228ENST00000565393 KIF21BO75037 1637 aa10.42□□□□□ -0.74
TCF4-228ENST00000565393 ARAP3Q8WWN8 1544 aa10.41□□□□□ -0.74
TCF4-228ENST00000565393 FMN1Q68DA7 1419 aa10.41□□□□□ -0.74
TCF4-228ENST00000565393 EFCAB5A4FU69 1503 aa10.4□□□□□ -0.74
TCF4-228ENST00000565393 EFCAB2Q5VUJ9 269 aa10.4□□□□□ -0.74
TCF4-228ENST00000565393 MYT1LQ9UL68 1186 aa10.4□□□□□ -0.74
TCF4-228ENST00000565393 NEO1Q92859 1461 aa10.39□□□□□ -0.75
TCF4-228ENST00000565393 AKNAQ7Z591 1439 aa10.38□□□□□ -0.75
TCF4-228ENST00000565393 ARHGAP35Q9NRY4 1499 aa10.37□□□□□ -0.75
TCF4-228ENST00000565393 ABCA9Q8IUA7 1624 aa10.37□□□□□ -0.75
TCF4-228ENST00000565393 PLPPR3Q6T4P5 718 aa10.37□□□□□ -0.75
TCF4-228ENST00000565393 DENND4BO75064 1496 aaPredicted RBP10.36□□□□□ -0.75
TCF4-228ENST00000565393 CDK13Q14004 1512 aaKnown RBP10.36□□□□□ -0.75
TCF4-228ENST00000565393 FANCAO15360 1455 aa10.36□□□□□ -0.75
TCF4-228ENST00000565393 MLECQ14165 292 aa10.35□□□□□ -0.75
TCF4-228ENST00000565393 PLCH2O75038 1416 aa10.34□□□□□ -0.75
TCF4-228ENST00000565393 SCAPERQ9BY12 1400 aa10.34□□□□□ -0.75
TCF4-228ENST00000565393 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP10.33□□□□□ -0.76
TCF4-228ENST00000565393 AFAP1Q8N556 730 aa10.32□□□□□ -0.76
TCF4-228ENST00000565393 CLIP1P30622 1438 aa10.32□□□□□ -0.76
TCF4-228ENST00000565393 ZNF777Q9ULD5 760 aaPredicted RBP10.31□□□□□ -0.76
TCF4-228ENST00000565393 TROQ12816 1431 aaPredicted RBP10.3□□□□□ -0.76
TCF4-228ENST00000565393 HECW1Q76N89 1606 aa10.29□□□□□ -0.76
TCF4-228ENST00000565393 CASKIN1Q8WXD9 1431 aa10.28□□□□□ -0.76
TCF4-228ENST00000565393 POGZQ7Z3K3 1410 aa10.27□□□□□ -0.77
TCF4-228ENST00000565393 YEATS2Q9ULM3 1422 aa10.27□□□□□ -0.77
TCF4-228ENST00000565393 PTPRMP28827 1452 aa10.27□□□□□ -0.77
TCF4-228ENST00000565393 TTC37Q6PGP7 1564 aa10.26□□□□□ -0.77
TCF4-228ENST00000565393 LOC105371045A0A1W2PR82 267 aa10.26□□□□□ -0.77
TCF4-228ENST00000565393 ILDR1Q86SU0 546 aaPredicted RBP10.26□□□□□ -0.77
TCF4-228ENST00000565393 MAGI2Q86UL8 1455 aa10.25□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 10.9 ms