RNA–Protein interactions for RNA: ENST00000565140.5

CLN3-214, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,225 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-214ENST00000565140 CARMIL1Q5VZK9 1371 aa31.5■■■□□ 2.63
CLN3-214ENST00000565140 PRG4Q92954 1404 aaPredicted RBP31.47■■■□□ 2.63
CLN3-214ENST00000565140 KIAA0586Q9BVV6 1533 aa31.42■■■□□ 2.62
CLN3-214ENST00000565140 TRHP20396 242 aaPredicted RBP31.37■■■□□ 2.61
CLN3-214ENST00000565140 RAPGEF2Q9Y4G8 1499 aa31.27■■■□□ 2.6
CLN3-214ENST00000565140 IQGAP2Q13576 1575 aa31.2■■■□□ 2.58
CLN3-214ENST00000565140 PRXQ9BXM0 1461 aa31.08■■■□□ 2.57
CLN3-214ENST00000565140 ADCY10Q96PN6 1610 aa31.08■■■□□ 2.57
CLN3-214ENST00000565140 CARMIL2Q6F5E8 1435 aa31.07■■■□□ 2.56
CLN3-214ENST00000565140 CTTNBP2Q8WZ74 1663 aa31.05■■■□□ 2.56
CLN3-214ENST00000565140 DISP1Q96F81 1524 aa31.03■■■□□ 2.56
CLN3-214ENST00000565140 PTPRGP23470 1445 aa31.03■■■□□ 2.56
CLN3-214ENST00000565140 TTBK1Q5TCY1 1321 aaPredicted RBP31.02■■■□□ 2.56
CLN3-214ENST00000565140 UGGT2Q9NYU1 1516 aa31.02■■■□□ 2.56
CLN3-214ENST00000565140 TNIKQ9UKE5 1360 aa31.02■■■□□ 2.56
CLN3-214ENST00000565140 CSRNP3Q8WYN3 585 aa30.97■■■□□ 2.55
CLN3-214ENST00000565140 KIF13AQ9H1H9 1805 aa30.96■■■□□ 2.55
CLN3-214ENST00000565140 NPM1P06748 294 aaKnown RBP eCLIP30.96■■■□□ 2.55
CLN3-214ENST00000565140 KIAA0556O60303 1618 aa30.91■■■□□ 2.54
CLN3-214ENST00000565140 MAPKBP1O60336 1514 aa30.89■■■□□ 2.54
CLN3-214ENST00000565140 CHIC1Q5VXU3 224 aa30.87■■■□□ 2.53
CLN3-214ENST00000565140 EEA1Q15075 1411 aa30.87■■■□□ 2.53
CLN3-214ENST00000565140 FAM9AQ8IZU1 332 aaPredicted RBP30.83■■■□□ 2.53
CLN3-214ENST00000565140 ABCC10Q5T3U5 1492 aa30.82■■■□□ 2.52
CLN3-214ENST00000565140 UACAQ9BZF9 1416 aa30.81■■■□□ 2.52
CLN3-214ENST00000565140 ABCC2Q92887 1545 aa30.8■■■□□ 2.52
CLN3-214ENST00000565140 UHRF1BP1LA0JNW5 1464 aa30.8■■■□□ 2.52
CLN3-214ENST00000565140 FAM69CQ0P6D2 419 aa30.78■■■□□ 2.52
CLN3-214ENST00000565140 GOLGA3Q08378 1498 aa30.77■■■□□ 2.52
CLN3-214ENST00000565140 DIP2BQ9P265 1576 aa30.77■■■□□ 2.52
CLN3-214ENST00000565140 KDM5BQ9UGL1 1544 aa30.67■■■□□ 2.5
CLN3-214ENST00000565140 PLB1Q6P1J6 1458 aa30.66■■■□□ 2.5
CLN3-214ENST00000565140 ASXL2Q76L83 1435 aa30.65■■■□□ 2.5
CLN3-214ENST00000565140 KIF21BO75037 1637 aa30.65■■■□□ 2.5
CLN3-214ENST00000565140 ZCCHC11Q5TAX3 1644 aaKnown RBP30.65■■■□□ 2.5
CLN3-214ENST00000565140 P3H3Q8IVL6 736 aa30.63■■■□□ 2.49
CLN3-214ENST00000565140 TSPOAP1O95153 1857 aa30.63■■■□□ 2.49
CLN3-214ENST00000565140 ABCA8O94911 1581 aa30.62■■■□□ 2.49
CLN3-214ENST00000565140 SAMD9Q5K651 1589 aa30.6■■■□□ 2.49
CLN3-214ENST00000565140 RANGAP1P46060 587 aaPredicted RBP30.53■■■□□ 2.48
CLN3-214ENST00000565140 GLI2P10070 1586 aa30.52■■■□□ 2.48
CLN3-214ENST00000565140 EHMT2Q96KQ7 1210 aa30.5■■■□□ 2.47
CLN3-214ENST00000565140 EPRSP07814 1512 aaKnown RBP30.47■■■□□ 2.47
CLN3-214ENST00000565140 PPRC1Q5VV67 1664 aaKnown RBP30.45■■■□□ 2.46
CLN3-214ENST00000565140 WDR7Q9Y4E6 1490 aa30.43■■■□□ 2.46
CLN3-214ENST00000565140 UBTFP17480 764 aaKnown RBP30.4■■■□□ 2.46
CLN3-214ENST00000565140 MAP3K4Q9Y6R4 1608 aa30.4■■■□□ 2.46
CLN3-214ENST00000565140 FHOD3Q2V2M9 1422 aa30.39■■■□□ 2.46
CLN3-214ENST00000565140 ARID3CA6NKF2 412 aa30.39■■■□□ 2.46
CLN3-214ENST00000565140 RAPGEF6Q8TEU7 1601 aa30.38■■■□□ 2.45
CLN3-214ENST00000565140 ATP10BO94823 1461 aa30.37■■■□□ 2.45
CLN3-214ENST00000565140 KDM6BO15054 1643 aa30.36■■■□□ 2.45
CLN3-214ENST00000565140 EFCAB5A4FU69 1503 aa30.35■■■□□ 2.45
CLN3-214ENST00000565140 KCNH8Q96L42 1107 aa30.32■■■□□ 2.44
CLN3-214ENST00000565140 NUP153P49790 1475 aaKnown RBP30.26■■■□□ 2.44
CLN3-214ENST00000565140 CFAP43Q8NDM7 1665 aa30.24■■■□□ 2.43
CLN3-214ENST00000565140 TEX14Q8IWB6 1497 aa30.2■■■□□ 2.43
CLN3-214ENST00000565140 CD109Q6YHK3 1445 aa30.2■■■□□ 2.42
CLN3-214ENST00000565140 ARHGAP35Q9NRY4 1499 aa30.19■■■□□ 2.42
CLN3-214ENST00000565140 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP30.18■■■□□ 2.42
CLN3-214ENST00000565140 HNRNPUL2Q1KMD3 747 aaKnown RBP30.18■■■□□ 2.42
CLN3-214ENST00000565140 COL17A1Q9UMD9 1497 aaPredicted RBP30.18■■■□□ 2.42
CLN3-214ENST00000565140 MAGI3Q5TCQ9 1506 aa30.15■■■□□ 2.42
CLN3-214ENST00000565140 ABCA9Q8IUA7 1624 aa30.11■■■□□ 2.41
CLN3-214ENST00000565140 FMN1Q68DA7 1419 aa30.06■■■□□ 2.4
CLN3-214ENST00000565140 CDK13Q14004 1512 aaKnown RBP30.04■■■□□ 2.4
CLN3-214ENST00000565140 PLEKHD1A6NEE1 506 aa30.03■■■□□ 2.4
CLN3-214ENST00000565140 AEBP2Q6ZN18 517 aaPredicted RBP30.03■■■□□ 2.4
CLN3-214ENST00000565140 ATP1B4Q9UN42 357 aaPredicted RBP29.99■■■□□ 2.39
CLN3-214ENST00000565140 HECW1Q76N89 1606 aa29.99■■■□□ 2.39
CLN3-214ENST00000565140 LRRIQ1Q96JM4 1722 aa29.95■■■□□ 2.38
CLN3-214ENST00000565140 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP29.91■■■□□ 2.38
CLN3-214ENST00000565140 ARAP3Q8WWN8 1544 aa29.91■■■□□ 2.38
CLN3-214ENST00000565140 KDM4FA0A1W2PPD8 638 aa29.88■■■□□ 2.37
CLN3-214ENST00000565140 TTC37Q6PGP7 1564 aa29.87■■■□□ 2.37
CLN3-214ENST00000565140 CLIP1P30622 1438 aa29.87■■■□□ 2.37
CLN3-214ENST00000565140 PHLDB1Q86UU1 1377 aa29.85■■■□□ 2.37
CLN3-214ENST00000565140 NEO1Q92859 1461 aa29.85■■■□□ 2.37
CLN3-214ENST00000565140 PCF11O94913 1555 aaKnown RBP29.85■■■□□ 2.37
CLN3-214ENST00000565140 CASKIN1Q8WXD9 1431 aa29.82■■■□□ 2.36
CLN3-214ENST00000565140 CDK11AQ9UQ88 783 aaPredicted RBP29.79■■■□□ 2.36
CLN3-214ENST00000565140 RAPGEF3O95398 923 aa29.78■■■□□ 2.36
CLN3-214ENST00000565140 KIF14Q15058 1648 aa29.77■■■□□ 2.36
CLN3-214ENST00000565140 FANCAO15360 1455 aa29.75■■■□□ 2.35
CLN3-214ENST00000565140 TROQ12816 1431 aaPredicted RBP29.74■■■□□ 2.35
CLN3-214ENST00000565140 FRMPD1Q5SYB0 1578 aa29.73■■■□□ 2.35
CLN3-214ENST00000565140 AKNAQ7Z591 1439 aa29.73■■■□□ 2.35
CLN3-214ENST00000565140 ADGRL1O94910 1474 aa29.73■■■□□ 2.35
CLN3-214ENST00000565140 CFAP74Q9C0B2 1584 aa29.73■■■□□ 2.35
CLN3-214ENST00000565140 FYCO1Q9BQS8 1478 aa29.72■■■□□ 2.35
CLN3-214ENST00000565140 CCDC18Q5T9S5 1454 aa29.71■■■□□ 2.35
CLN3-214ENST00000565140 MYO5CQ9NQX4 1742 aa29.71■■■□□ 2.35
CLN3-214ENST00000565140 PLCH2O75038 1416 aa29.71■■■□□ 2.35
CLN3-214ENST00000565140 RICTORQ6R327 1708 aa29.68■■■□□ 2.34
CLN3-214ENST00000565140 LOC105371045A0A1W2PR82 267 aa29.67■■■□□ 2.34
CLN3-214ENST00000565140 CEP162Q5TB80 1403 aa29.65■■■□□ 2.34
CLN3-214ENST00000565140 DENND4BO75064 1496 aaPredicted RBP29.65■■■□□ 2.34
CLN3-214ENST00000565140 EFCAB2Q5VUJ9 269 aa29.58■■■□□ 2.33
CLN3-214ENST00000565140 CDC42BPBQ9Y5S2 1711 aa29.58■■■□□ 2.33
CLN3-214ENST00000565140 SCAPERQ9BY12 1400 aa29.55■■■□□ 2.32
Retrieved 100 of 20,778 RNA–protein pairs in 48 ms