RNA–Protein interactions for RNA: ENST00000564288.5

MACF1-231, Transcript of microtubule-actin crosslinking factor 1, human

APPRIS ALT2 TSL 5 BASIC

Gene MACF1, Length 24,828 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
MACF1-231	ENST00000564288	GSE1	Q14687	1217 aa		5.62	□□□□□ -1.51
MACF1-231	ENST00000564288	VSIG10	Q8N0Z9	540 aa		5.62	□□□□□ -1.51
MACF1-231	ENST00000564288	TNIK	Q9UKE5	1360 aa		5.62	□□□□□ -1.51
MACF1-231	ENST00000564288	CEP164	Q9UPV0	1460 aa		5.62	□□□□□ -1.51
MACF1-231	ENST00000564288	MTERF4	Q7Z6M4	381 aa	Known RBP	5.61	□□□□□ -1.51
MACF1-231	ENST00000564288	ANO8	Q9HCE9	1232 aa	Predicted RBP	5.61	□□□□□ -1.51
MACF1-231	ENST00000564288	GOLGA6L2	Q8N9W4	650 aa	Predicted RBP	5.61	□□□□□ -1.51
MACF1-231	ENST00000564288	NAP1L5	Q96NT1	182 aa	Predicted RBP	5.61	□□□□□ -1.51
MACF1-231	ENST00000564288	RRP9	O43818	475 aa	Known RBP	5.6	□□□□□ -1.51
MACF1-231	ENST00000564288	FHAD1	B1AJZ9	1412 aa		5.59	□□□□□ -1.51
MACF1-231	ENST00000564288	MS4A1	P11836	297 aa		5.59	□□□□□ -1.51
MACF1-231	ENST00000564288	RSF1	Q96T23	1441 aa	Predicted RBP	5.59	□□□□□ -1.51
MACF1-231	ENST00000564288	PODXL2	Q9NZ53	605 aa		5.59	□□□□□ -1.51
MACF1-231	ENST00000564288	CFAP44	Q96MT7	982 aa		5.58	□□□□□ -1.52
MACF1-231	ENST00000564288	CEP162	Q5TB80	1403 aa		5.57	□□□□□ -1.52
MACF1-231	ENST00000564288	PKNOX2	Q96KN3	472 aa		5.57	□□□□□ -1.52
MACF1-231	ENST00000564288	TMC1	Q8TDI8	760 aa		5.57	□□□□□ -1.52
MACF1-231	ENST00000564288	NPM2	Q86SE8	214 aa	Known RBP	5.57	□□□□□ -1.52
MACF1-231	ENST00000564288	TRIM52	Q96A61	297 aa		5.57	□□□□□ -1.52
MACF1-231	ENST00000564288	GOLGA6L22	H0YM25	854 aa		5.56	□□□□□ -1.52
MACF1-231	ENST00000564288	LAS1L	Q9Y4W2	734 aa	Known RBP	5.56	□□□□□ -1.52
MACF1-231	ENST00000564288	FAM43A	Q8N2R8	423 aa		5.55	□□□□□ -1.52
MACF1-231	ENST00000564288	SKOR2	Q2VWA4	1001 aa	Predicted RBP	5.55	□□□□□ -1.52
MACF1-231	ENST00000564288	ATP1B4	Q9UN42	357 aa	Predicted RBP	5.55	□□□□□ -1.52
MACF1-231	ENST00000564288	TAF3	Q5VWG9	929 aa		5.55	□□□□□ -1.52
MACF1-231	ENST00000564288	MYH16	Q9H6N6	1097 aa		5.55	□□□□□ -1.52
MACF1-231	ENST00000564288	CNGB1	Q14028	1251 aa	Predicted RBP	5.54	□□□□□ -1.52
MACF1-231	ENST00000564288	RTN4	Q9NQC3	1192 aa	Known RBP	5.53	□□□□□ -1.52
MACF1-231	ENST00000564288	NGEF	Q8N5V2	710 aa		5.53	□□□□□ -1.52
MACF1-231	ENST00000564288	TPM2	P07951	284 aa		5.53	□□□□□ -1.52
MACF1-231	ENST00000564288	KTN1	Q86UP2	1357 aa	Known RBP	5.52	□□□□□ -1.53
MACF1-231	ENST00000564288	PDCL3	Q9H2J4	239 aa		5.52	□□□□□ -1.53
MACF1-231	ENST00000564288	GOLGA6L3	A6NEY3	463 aa		5.52	□□□□□ -1.53
MACF1-231	ENST00000564288	IL27	Q8NEV9	243 aa		5.52	□□□□□ -1.53
MACF1-231	ENST00000564288	CSPP1	Q1MSJ5	1256 aa		5.51	□□□□□ -1.53
MACF1-231	ENST00000564288	CDK11B	P21127	795 aa	Known RBP	5.51	□□□□□ -1.53
MACF1-231	ENST00000564288	PHLDB1	Q86UU1	1377 aa		5.51	□□□□□ -1.53
MACF1-231	ENST00000564288	ZMYND15	Q9H091	742 aa		5.51	□□□□□ -1.53
MACF1-231	ENST00000564288	C11orf95	C9JLR9	678 aa	Predicted RBP	5.51	□□□□□ -1.53
MACF1-231	ENST00000564288	TNNT3	P45378	269 aa	Predicted RBP	5.51	□□□□□ -1.53
MACF1-231	ENST00000564288	SMARCA2	P51531	1590 aa		5.5	□□□□□ -1.53
MACF1-231	ENST00000564288	AAMP	Q13685	434 aa		5.5	□□□□□ -1.53
MACF1-231	ENST00000564288	CLIP1	P30622	1438 aa		5.5	□□□□□ -1.53
MACF1-231	ENST00000564288	ISY1	Q9ULR0	285 aa	Known RBP	5.5	□□□□□ -1.53
MACF1-231	ENST00000564288	MRS2	Q9HD23	443 aa		5.5	□□□□□ -1.53
MACF1-231	ENST00000564288	FAM9B	Q8IZU0	186 aa		5.5	□□□□□ -1.53
MACF1-231	ENST00000564288	KIF27	Q86VH2	1401 aa		5.5	□□□□□ -1.53
MACF1-231	ENST00000564288	STAC3	Q96MF2	364 aa		5.49	□□□□□ -1.53
MACF1-231	ENST00000564288	ROCK2	O75116	1388 aa	Known RBP	5.49	□□□□□ -1.53
MACF1-231	ENST00000564288	EIF4G2	P78344	907 aa	Known RBP eCLIP	5.49	□□□□□ -1.53	2e-8	■■■■□ 19.7
MACF1-231	ENST00000564288	SALL2	Q9Y467	1007 aa	Predicted RBP	5.49	□□□□□ -1.53
MACF1-231	ENST00000564288	B4GALNT3	Q6L9W6	998 aa		5.49	□□□□□ -1.53
MACF1-231	ENST00000564288	CHMP4B	Q9H444	224 aa	Known RBP	5.49	□□□□□ -1.53
MACF1-231	ENST00000564288	PDE3B	Q13370	1112 aa		5.49	□□□□□ -1.53
MACF1-231	ENST00000564288	VPS8	Q8N3P4	1428 aa		5.48	□□□□□ -1.53
MACF1-231	ENST00000564288	CDCA8	Q53HL2	280 aa		5.48	□□□□□ -1.53
MACF1-231	ENST00000564288	DNTTIP2	Q5QJE6	756 aa	Known RBP	5.48	□□□□□ -1.53
MACF1-231	ENST00000564288	ZBTB4	Q9P1Z0	1013 aa	Predicted RBP	5.48	□□□□□ -1.53
MACF1-231	ENST00000564288	MSN	P26038	577 aa	Known RBP	5.47	□□□□□ -1.53
MACF1-231	ENST00000564288	PDE4A	P27815	886 aa		5.47	□□□□□ -1.53
MACF1-231	ENST00000564288	DROSHA	Q9NRR4	1374 aa	Known RBP eCLIP	5.47	□□□□□ -1.53	1e-6	■□□□□ 11
MACF1-231	ENST00000564288	CHAF1A	Q13111	956 aa	Predicted RBP	5.47	□□□□□ -1.53
MACF1-231	ENST00000564288	MRE11	P49959	708 aa		5.46	□□□□□ -1.53
MACF1-231	ENST00000564288	POLR3GL	Q9BT43	218 aa		5.46	□□□□□ -1.54
MACF1-231	ENST00000564288	CALR	P27797	417 aa	Known RBP	5.46	□□□□□ -1.54
MACF1-231	ENST00000564288	PPP1R15A	O75807	674 aa	Predicted RBP	5.45	□□□□□ -1.54
MACF1-231	ENST00000564288	PDE4C	Q08493	712 aa		5.45	□□□□□ -1.54
MACF1-231	ENST00000564288	KIAA2012	Q0VF49	1180 aa		5.45	□□□□□ -1.54
MACF1-231	ENST00000564288	GBP4	Q96PP9	640 aa		5.45	□□□□□ -1.54
MACF1-231	ENST00000564288	ERICH3	Q5RHP9	1530 aa		5.45	□□□□□ -1.54
MACF1-231	ENST00000564288	ABCC8	Q09428	1581 aa		5.45	□□□□□ -1.54
MACF1-231	ENST00000564288	FAM50A	Q14320	339 aa	Known RBP	5.44	□□□□□ -1.54
MACF1-231	ENST00000564288	CCDC18	Q5T9S5	1454 aa		5.44	□□□□□ -1.54
MACF1-231	ENST00000564288	HAP1	P54257	671 aa	Predicted RBP	5.44	□□□□□ -1.54
MACF1-231	ENST00000564288	PTMA	P06454	111 aa	Known RBP	5.44	□□□□□ -1.54
MACF1-231	ENST00000564288	TONSL	Q96HA7	1378 aa		5.44	□□□□□ -1.54
MACF1-231	ENST00000564288	TOP2A	P11388	1531 aa	Known RBP	5.44	□□□□□ -1.54
MACF1-231	ENST00000564288	FMN1	Q68DA7	1419 aa		5.43	□□□□□ -1.54
MACF1-231	ENST00000564288	MAP3K1	Q13233	1512 aa		5.43	□□□□□ -1.54
MACF1-231	ENST00000564288	IRX6	P78412	446 aa	Predicted RBP	5.43	□□□□□ -1.54
MACF1-231	ENST00000564288	PDCL2	Q8N4E4	241 aa		5.43	□□□□□ -1.54
MACF1-231	ENST00000564288	CANX	P27824	592 aa	Known RBP	5.42	□□□□□ -1.54
MACF1-231	ENST00000564288	CCNB3	Q8WWL7	1395 aa		5.42	□□□□□ -1.54
MACF1-231	ENST00000564288	SCAPER	Q9BY12	1400 aa		5.42	□□□□□ -1.54
MACF1-231	ENST00000564288	CHMP4A	Q9BY43	222 aa		5.42	□□□□□ -1.54
MACF1-231	ENST00000564288	APP	P05067	770 aa		5.41	□□□□□ -1.54
MACF1-231	ENST00000564288	RCAN3	Q9UKA8	241 aa		5.41	□□□□□ -1.54
MACF1-231	ENST00000564288	NFKBIB	Q15653	356 aa		5.41	□□□□□ -1.54
MACF1-231	ENST00000564288	CALD1	Q05682	793 aa	Known RBP	5.41	□□□□□ -1.54
MACF1-231	ENST00000564288	AKNA	Q7Z591	1439 aa		5.41	□□□□□ -1.54
MACF1-231	ENST00000564288	HMGN5	P82970	282 aa	Known RBP	5.41	□□□□□ -1.54
MACF1-231	ENST00000564288	MSH5	O43196	834 aa		5.4	□□□□□ -1.54
MACF1-231	ENST00000564288	RWDD1	Q9H446	243 aa	Predicted RBP	5.4	□□□□□ -1.54
MACF1-231	ENST00000564288	GOLGA6L6	A8MZA4	724 aa		5.4	□□□□□ -1.55
MACF1-231	ENST00000564288	FAM161A	Q3B820	660 aa		5.4	□□□□□ -1.55
MACF1-231	ENST00000564288	TERF1	P54274	439 aa		5.39	□□□□□ -1.55
MACF1-231	ENST00000564288	TSPYL1	Q9H0U9	437 aa		5.39	□□□□□ -1.55
MACF1-231	ENST00000564288	PDZRN4	Q6ZMN7	1036 aa	Predicted RBP	5.39	□□□□□ -1.55
MACF1-231	ENST00000564288	MCM5	P33992	734 aa		5.39	□□□□□ -1.55
MACF1-231	ENST00000564288	RALBP1	Q15311	655 aa		5.39	□□□□□ -1.55

Retrieved 100 of 20,778 RNA–protein pairs in 13 ms