RNA–Protein interactions for RNA: ENST00000563739.5

SF3B3-204, Transcript of splicing factor 3b subunit 3, humanhuman

TSL 2

Gene SF3B3, Length 1,105 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B3-204ENST00000563739 DIP2BQ9P265 1576 aa19.13■□□□□ 0.65
SF3B3-204ENST00000563739 PRG4Q92954 1404 aaPredicted RBP19.12■□□□□ 0.65
SF3B3-204ENST00000563739 ADCY10Q96PN6 1610 aa19.11■□□□□ 0.65
SF3B3-204ENST00000563739 MAPKBP1O60336 1514 aa19.1■□□□□ 0.65
SF3B3-204ENST00000563739 ABCC10Q5T3U5 1492 aa19.09■□□□□ 0.65
SF3B3-204ENST00000563739 JPH4Q96JJ6 628 aa18.99■□□□□ 0.63
SF3B3-204ENST00000563739 KDM6BO15054 1643 aa18.96■□□□□ 0.63
SF3B3-204ENST00000563739 PPRC1Q5VV67 1664 aaKnown RBP18.94■□□□□ 0.62
SF3B3-204ENST00000563739 TSPOAP1O95153 1857 aa18.94■□□□□ 0.62
SF3B3-204ENST00000563739 KDM4FA0A1W2PPD8 638 aa18.92■□□□□ 0.62
SF3B3-204ENST00000563739 FAM69CQ0P6D2 419 aa18.92■□□□□ 0.62
SF3B3-204ENST00000563739 SUPT5HO00267 1087 aaKnown RBP18.91■□□□□ 0.62
SF3B3-204ENST00000563739 KIAA0586Q9BVV6 1533 aa18.9■□□□□ 0.62
SF3B3-204ENST00000563739 CUL7Q14999 1698 aa18.87■□□□□ 0.61
SF3B3-204ENST00000563739 IGF1RP08069 1367 aa18.83■□□□□ 0.61
SF3B3-204ENST00000563739 GLI2P10070 1586 aa18.78■□□□□ 0.6
SF3B3-204ENST00000563739 ABCC2Q92887 1545 aa18.77■□□□□ 0.6
SF3B3-204ENST00000563739 COL17A1Q9UMD9 1497 aaPredicted RBP18.75■□□□□ 0.59
SF3B3-204ENST00000563739 NPM1P06748 294 aaKnown RBP eCLIP18.72■□□□□ 0.59
SF3B3-204ENST00000563739 ASXL2Q76L83 1435 aa18.72■□□□□ 0.59
SF3B3-204ENST00000563739 MAP3K4Q9Y6R4 1608 aa18.71■□□□□ 0.59
SF3B3-204ENST00000563739 DISP1Q96F81 1524 aa18.71■□□□□ 0.59
SF3B3-204ENST00000563739 KIF27Q86VH2 1401 aa18.71■□□□□ 0.59
SF3B3-204ENST00000563739 UHRF1BP1LA0JNW5 1464 aa18.71■□□□□ 0.59
SF3B3-204ENST00000563739 ADGRL1O94910 1474 aa18.71■□□□□ 0.59
SF3B3-204ENST00000563739 PTPRGP23470 1445 aa18.7■□□□□ 0.58
SF3B3-204ENST00000563739 IQGAP2Q13576 1575 aa18.7■□□□□ 0.58
SF3B3-204ENST00000563739 TNIKQ9UKE5 1360 aa18.67■□□□□ 0.58
SF3B3-204ENST00000563739 PLB1Q6P1J6 1458 aa18.65■□□□□ 0.58
SF3B3-204ENST00000563739 ZCCHC11Q5TAX3 1644 aaKnown RBP18.65■□□□□ 0.58
SF3B3-204ENST00000563739 EPRSP07814 1512 aaKnown RBP18.64■□□□□ 0.58
SF3B3-204ENST00000563739 KDM5BQ9UGL1 1544 aa18.64■□□□□ 0.58
SF3B3-204ENST00000563739 CARMIL1Q5VZK9 1371 aa18.63■□□□□ 0.57
SF3B3-204ENST00000563739 HECW2Q9P2P5 1572 aa18.62■□□□□ 0.57
SF3B3-204ENST00000563739 UGGT2Q9NYU1 1516 aa18.6■□□□□ 0.57
SF3B3-204ENST00000563739 UACAQ9BZF9 1416 aa18.6■□□□□ 0.57
SF3B3-204ENST00000563739 KIAA0556O60303 1618 aa18.6■□□□□ 0.57
SF3B3-204ENST00000563739 CARMIL2Q6F5E8 1435 aa18.58■□□□□ 0.57
SF3B3-204ENST00000563739 TTBK1Q5TCY1 1321 aaPredicted RBP18.54■□□□□ 0.56
SF3B3-204ENST00000563739 TEX14Q8IWB6 1497 aa18.49■□□□□ 0.55
SF3B3-204ENST00000563739 WDR7Q9Y4E6 1490 aa18.48■□□□□ 0.55
SF3B3-204ENST00000563739 CFAP43Q8NDM7 1665 aa18.47■□□□□ 0.55
SF3B3-204ENST00000563739 CTTNBP2Q8WZ74 1663 aa18.47■□□□□ 0.55
SF3B3-204ENST00000563739 ABCA8O94911 1581 aa18.46■□□□□ 0.55
SF3B3-204ENST00000563739 RAPGEF2Q9Y4G8 1499 aa18.46■□□□□ 0.54
SF3B3-204ENST00000563739 KIF21BO75037 1637 aa18.44■□□□□ 0.54
SF3B3-204ENST00000563739 MAGI3Q5TCQ9 1506 aa18.44■□□□□ 0.54
SF3B3-204ENST00000563739 FBXO41Q8TF61 875 aa18.38■□□□□ 0.53
SF3B3-204ENST00000563739 CD109Q6YHK3 1445 aa18.33■□□□□ 0.53
SF3B3-204ENST00000563739 LMTK3Q96Q04 1460 aa18.33■□□□□ 0.52
SF3B3-204ENST00000563739 ADAMTSL3P82987 1691 aa18.32■□□□□ 0.52
SF3B3-204ENST00000563739 ARAP3Q8WWN8 1544 aa18.3■□□□□ 0.52
SF3B3-204ENST00000563739 FRMPD1Q5SYB0 1578 aa18.3■□□□□ 0.52
SF3B3-204ENST00000563739 ABCA9Q8IUA7 1624 aa18.28■□□□□ 0.52
SF3B3-204ENST00000563739 PRXQ9BXM0 1461 aa18.26■□□□□ 0.51
SF3B3-204ENST00000563739 GOLGA3Q08378 1498 aa18.26■□□□□ 0.51
SF3B3-204ENST00000563739 ILDR2Q71H61 639 aa18.23■□□□□ 0.51
SF3B3-204ENST00000563739 ATP10BO94823 1461 aa18.22■□□□□ 0.51
SF3B3-204ENST00000563739 SOCS7O14512 581 aa18.22■□□□□ 0.51
SF3B3-204ENST00000563739 BCORL1Q5H9F3 1711 aa18.22■□□□□ 0.51
SF3B3-204ENST00000563739 PTPRMP28827 1452 aa18.21■□□□□ 0.51
SF3B3-204ENST00000563739 SAMD9Q5K651 1589 aa18.21■□□□□ 0.51
SF3B3-204ENST00000563739 MADDQ8WXG6 1647 aa18.2■□□□□ 0.5
SF3B3-204ENST00000563739 SIGLEC1Q9BZZ2 1709 aa18.18■□□□□ 0.5
SF3B3-204ENST00000563739 KCNH8Q96L42 1107 aa18.18■□□□□ 0.5
SF3B3-204ENST00000563739 ARHGEF40Q8TER5 1519 aa18.14■□□□□ 0.49
SF3B3-204ENST00000563739 PCF11O94913 1555 aaKnown RBP18.14■□□□□ 0.49
SF3B3-204ENST00000563739 RAPGEF6Q8TEU7 1601 aa18.14■□□□□ 0.49
SF3B3-204ENST00000563739 RICTORQ6R327 1708 aa18.13■□□□□ 0.49
SF3B3-204ENST00000563739 NEO1Q92859 1461 aa18.12■□□□□ 0.49
SF3B3-204ENST00000563739 RIMS1Q86UR5 1692 aaKnown RBP18.1■□□□□ 0.49
SF3B3-204ENST00000563739 NUP153P49790 1475 aaKnown RBP18.09■□□□□ 0.49
SF3B3-204ENST00000563739 ARID3CA6NKF2 412 aa18.09■□□□□ 0.49
SF3B3-204ENST00000563739 RAPGEF3O95398 923 aa18.08■□□□□ 0.48
SF3B3-204ENST00000563739 PHLDB1Q86UU1 1377 aa18.06■□□□□ 0.48
SF3B3-204ENST00000563739 TTC37Q6PGP7 1564 aa18.03■□□□□ 0.48
SF3B3-204ENST00000563739 ZMYM4Q5VZL5 1548 aa18.03■□□□□ 0.48
SF3B3-204ENST00000563739 P3H3Q8IVL6 736 aa18.02■□□□□ 0.48
SF3B3-204ENST00000563739 FHOD3Q2V2M9 1422 aa17.99■□□□□ 0.47
SF3B3-204ENST00000563739 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP17.99■□□□□ 0.47
SF3B3-204ENST00000563739 YEATS2Q9ULM3 1422 aa17.97■□□□□ 0.47
SF3B3-204ENST00000563739 CFAP74Q9C0B2 1584 aa17.95■□□□□ 0.46
SF3B3-204ENST00000563739 DENND4BO75064 1496 aaPredicted RBP17.95■□□□□ 0.46
SF3B3-204ENST00000563739 FER1L4A9Z1Z3 1794 aa17.94■□□□□ 0.46
SF3B3-204ENST00000563739 DISP3Q9P2K9 1392 aa17.93■□□□□ 0.46
SF3B3-204ENST00000563739 AKNAQ7Z591 1439 aa17.93■□□□□ 0.46
SF3B3-204ENST00000563739 HECW1Q76N89 1606 aa17.93■□□□□ 0.46
SF3B3-204ENST00000563739 ZFYVE16Q7Z3T8 1539 aa17.93■□□□□ 0.46
SF3B3-204ENST00000563739 FANCAO15360 1455 aa17.92■□□□□ 0.46
SF3B3-204ENST00000563739 HSPA2P54652 639 aa17.9■□□□□ 0.46
SF3B3-204ENST00000563739 EFCAB5A4FU69 1503 aa17.89■□□□□ 0.45
SF3B3-204ENST00000563739 CDK13Q14004 1512 aaKnown RBP17.88■□□□□ 0.45
SF3B3-204ENST00000563739 ARHGEF12Q9NZN5 1544 aa17.88■□□□□ 0.45
SF3B3-204ENST00000563739 STRCQ7RTU9 1775 aa17.86■□□□□ 0.45
SF3B3-204ENST00000563739 ARID4BQ4LE39 1312 aaPredicted RBP17.85■□□□□ 0.45
SF3B3-204ENST00000563739 POGZQ7Z3K3 1410 aa17.85■□□□□ 0.45
SF3B3-204ENST00000563739 PREX1Q8TCU6 1659 aa17.84■□□□□ 0.45
SF3B3-204ENST00000563739 MAGI2Q86UL8 1455 aa17.84■□□□□ 0.45
SF3B3-204ENST00000563739 CSRNP3Q8WYN3 585 aa17.82■□□□□ 0.44
SF3B3-204ENST00000563739 KIF14Q15058 1648 aa17.8■□□□□ 0.44
Retrieved 100 of 20,778 RNA–protein pairs in 52 ms