RNA–Protein interactions for RNA: ENST00000563498.1

NME3-204, Transcript of NME/NM23 nucleoside diphosphate kinase 3, humanhuman

TSL 2 BASIC

Gene NME3, Length 920 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NME3-204ENST00000563498 KIF13AQ9H1H9 1805 aa33.02■■■□□ 2.88
NME3-204ENST00000563498 IGF1RP08069 1367 aa32.94■■■□□ 2.86
NME3-204ENST00000563498 KIF27Q86VH2 1401 aa32.94■■■□□ 2.86
NME3-204ENST00000563498 KIAA0586Q9BVV6 1533 aa32.93■■■□□ 2.86
NME3-204ENST00000563498 CUL7Q14999 1698 aa32.91■■■□□ 2.86
NME3-204ENST00000563498 MAPKBP1O60336 1514 aa32.9■■■□□ 2.86
NME3-204ENST00000563498 NPM1P06748 294 aaKnown RBP eCLIP32.89■■■□□ 2.86
NME3-204ENST00000563498 ABCC10Q5T3U5 1492 aa32.88■■■□□ 2.85
NME3-204ENST00000563498 ADCY10Q96PN6 1610 aa32.84■■■□□ 2.85
NME3-204ENST00000563498 FAM69CQ0P6D2 419 aa32.81■■■□□ 2.84
NME3-204ENST00000563498 DIP2BQ9P265 1576 aa32.78■■■□□ 2.84
NME3-204ENST00000563498 CARMIL1Q5VZK9 1371 aa32.7■■■□□ 2.83
NME3-204ENST00000563498 PTPRGP23470 1445 aa32.65■■■□□ 2.82
NME3-204ENST00000563498 CARMIL2Q6F5E8 1435 aa32.61■■■□□ 2.81
NME3-204ENST00000563498 TNIKQ9UKE5 1360 aa32.58■■■□□ 2.81
NME3-204ENST00000563498 IQGAP2Q13576 1575 aa32.57■■■□□ 2.8
NME3-204ENST00000563498 KDM6BO15054 1643 aa32.55■■■□□ 2.8
NME3-204ENST00000563498 ABCC2Q92887 1545 aa32.53■■■□□ 2.8
NME3-204ENST00000563498 TSPOAP1O95153 1857 aa32.48■■■□□ 2.79
NME3-204ENST00000563498 UHRF1BP1LA0JNW5 1464 aa32.47■■■□□ 2.79
NME3-204ENST00000563498 TTBK1Q5TCY1 1321 aaPredicted RBP32.45■■■□□ 2.78
NME3-204ENST00000563498 PLB1Q6P1J6 1458 aa32.43■■■□□ 2.78
NME3-204ENST00000563498 DISP1Q96F81 1524 aa32.43■■■□□ 2.78
NME3-204ENST00000563498 ASXL2Q76L83 1435 aa32.42■■■□□ 2.78
NME3-204ENST00000563498 UACAQ9BZF9 1416 aa32.41■■■□□ 2.78
NME3-204ENST00000563498 GLI2P10070 1586 aa32.41■■■□□ 2.78
NME3-204ENST00000563498 RAPGEF2Q9Y4G8 1499 aa32.4■■■□□ 2.78
NME3-204ENST00000563498 UGGT2Q9NYU1 1516 aa32.37■■■□□ 2.77
NME3-204ENST00000563498 KDM5BQ9UGL1 1544 aa32.31■■■□□ 2.76
NME3-204ENST00000563498 KDM4FA0A1W2PPD8 638 aa32.3■■■□□ 2.76
NME3-204ENST00000563498 PPRC1Q5VV67 1664 aaKnown RBP32.3■■■□□ 2.76
NME3-204ENST00000563498 KIAA0556O60303 1618 aa32.27■■■□□ 2.76
NME3-204ENST00000563498 EPRSP07814 1512 aaKnown RBP32.23■■■□□ 2.75
NME3-204ENST00000563498 ZCCHC11Q5TAX3 1644 aaKnown RBP32.2■■■□□ 2.75
NME3-204ENST00000563498 MAP3K4Q9Y6R4 1608 aa32.2■■■□□ 2.75
NME3-204ENST00000563498 TEX14Q8IWB6 1497 aa32.14■■■□□ 2.74
NME3-204ENST00000563498 CTTNBP2Q8WZ74 1663 aa32.14■■■□□ 2.74
NME3-204ENST00000563498 GOLGA3Q08378 1498 aa32.1■■■□□ 2.73
NME3-204ENST00000563498 COL17A1Q9UMD9 1497 aaPredicted RBP32.1■■■□□ 2.73
NME3-204ENST00000563498 WDR7Q9Y4E6 1490 aa32.08■■■□□ 2.73
NME3-204ENST00000563498 PRXQ9BXM0 1461 aa32.02■■■□□ 2.72
NME3-204ENST00000563498 ADGRL1O94910 1474 aa32.01■■■□□ 2.71
NME3-204ENST00000563498 ABCA8O94911 1581 aa32■■■□□ 2.71
NME3-204ENST00000563498 MAGI3Q5TCQ9 1506 aa31.92■■■□□ 2.7
NME3-204ENST00000563498 CFAP43Q8NDM7 1665 aa31.92■■■□□ 2.7
NME3-204ENST00000563498 CD109Q6YHK3 1445 aa31.9■■■□□ 2.7
NME3-204ENST00000563498 KCNH8Q96L42 1107 aa31.84■■■□□ 2.69
NME3-204ENST00000563498 FAM9AQ8IZU1 332 aaPredicted RBP31.8■■■□□ 2.68
NME3-204ENST00000563498 ATP10BO94823 1461 aa31.72■■■□□ 2.67
NME3-204ENST00000563498 ARAP3Q8WWN8 1544 aa31.69■■■□□ 2.66
NME3-204ENST00000563498 SAMD9Q5K651 1589 aa31.68■■■□□ 2.66
NME3-204ENST00000563498 P3H3Q8IVL6 736 aa31.67■■■□□ 2.66
NME3-204ENST00000563498 CSRNP3Q8WYN3 585 aa31.67■■■□□ 2.66
NME3-204ENST00000563498 HECW2Q9P2P5 1572 aa31.64■■■□□ 2.66
NME3-204ENST00000563498 ABCA9Q8IUA7 1624 aa31.64■■■□□ 2.65
NME3-204ENST00000563498 ARID3CA6NKF2 412 aa31.63■■■□□ 2.65
NME3-204ENST00000563498 PHLDB1Q86UU1 1377 aa31.62■■■□□ 2.65
NME3-204ENST00000563498 RAPGEF6Q8TEU7 1601 aa31.6■■■□□ 2.65
NME3-204ENST00000563498 KIF21BO75037 1637 aa31.57■■■□□ 2.64
NME3-204ENST00000563498 EEA1Q15075 1411 aa31.56■■■□□ 2.64
NME3-204ENST00000563498 ILDR1Q86SU0 546 aaPredicted RBP31.54■■■□□ 2.64
NME3-204ENST00000563498 NEO1Q92859 1461 aa31.52■■■□□ 2.64
NME3-204ENST00000563498 NUP153P49790 1475 aaKnown RBP31.49■■■□□ 2.63
NME3-204ENST00000563498 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP31.45■■■□□ 2.63
NME3-204ENST00000563498 HNRNPUL2Q1KMD3 747 aaKnown RBP31.45■■■□□ 2.63
NME3-204ENST00000563498 FHOD3Q2V2M9 1422 aa31.41■■■□□ 2.62
NME3-204ENST00000563498 RAPGEF3O95398 923 aa31.41■■■□□ 2.62
NME3-204ENST00000563498 ADAMTSL3P82987 1691 aa31.38■■■□□ 2.61
NME3-204ENST00000563498 FRMPD1Q5SYB0 1578 aa31.37■■■□□ 2.61
NME3-204ENST00000563498 EFCAB5A4FU69 1503 aa31.34■■■□□ 2.61
NME3-204ENST00000563498 RANGAP1P46060 587 aaPredicted RBP31.34■■■□□ 2.61
NME3-204ENST00000563498 PLEKHD1A6NEE1 506 aa31.33■■■□□ 2.61
NME3-204ENST00000563498 PTPRMP28827 1452 aa31.33■■■□□ 2.61
NME3-204ENST00000563498 BCORL1Q5H9F3 1711 aa31.27■■■□□ 2.6
NME3-204ENST00000563498 DENND4BO75064 1496 aaPredicted RBP31.26■■■□□ 2.59
NME3-204ENST00000563498 CFAP74Q9C0B2 1584 aa31.26■■■□□ 2.59
NME3-204ENST00000563498 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP31.24■■■□□ 2.593e-22■□□□□ 10.7
NME3-204ENST00000563498 ARHGEF40Q8TER5 1519 aa31.24■■■□□ 2.59
NME3-204ENST00000563498 AKNAQ7Z591 1439 aa31.24■■■□□ 2.59
NME3-204ENST00000563498 FANCAO15360 1455 aa31.23■■■□□ 2.59
NME3-204ENST00000563498 RICTORQ6R327 1708 aa31.23■■■□□ 2.59
NME3-204ENST00000563498 ARID4BQ4LE39 1312 aaPredicted RBP31.21■■■□□ 2.59
NME3-204ENST00000563498 MADDQ8WXG6 1647 aa31.19■■■□□ 2.58
NME3-204ENST00000563498 TTC37Q6PGP7 1564 aa31.18■■■□□ 2.58
NME3-204ENST00000563498 ZMYM4Q5VZL5 1548 aa31.15■■■□□ 2.58
NME3-204ENST00000563498 CDK13Q14004 1512 aaKnown RBP31.12■■■□□ 2.57
NME3-204ENST00000563498 PCF11O94913 1555 aaKnown RBP31.09■■■□□ 2.57
NME3-204ENST00000563498 MAGI2Q86UL8 1455 aa31.09■■■□□ 2.57
NME3-204ENST00000563498 ZFYVE16Q7Z3T8 1539 aa31.08■■■□□ 2.57
NME3-204ENST00000563498 PLCH2O75038 1416 aa31.07■■■□□ 2.56
NME3-204ENST00000563498 FMN1Q68DA7 1419 aa31.07■■■□□ 2.56
NME3-204ENST00000563498 POGZQ7Z3K3 1410 aa31.07■■■□□ 2.56
NME3-204ENST00000563498 LMTK3Q96Q04 1460 aa31.06■■■□□ 2.56
NME3-204ENST00000563498 RIMS1Q86UR5 1692 aaKnown RBP31.06■■■□□ 2.56
NME3-204ENST00000563498 HECW1Q76N89 1606 aa31.02■■■□□ 2.56
NME3-204ENST00000563498 YEATS2Q9ULM3 1422 aa31.02■■■□□ 2.56
NME3-204ENST00000563498 UBTFP17480 764 aaKnown RBP31.01■■■□□ 2.55
NME3-204ENST00000563498 FBXO41Q8TF61 875 aa31■■■□□ 2.55
NME3-204ENST00000563498 SCAPERQ9BY12 1400 aa30.99■■■□□ 2.55
NME3-204ENST00000563498 ARHGAP35Q9NRY4 1499 aa30.99■■■□□ 2.55
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms