RNA–Protein interactions for RNA: ENST00000563404.1

HDGFL3-203, Transcript of HDGF like 3, humanhuman

TSL 5

Gene HDGFL3, Length 448 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDGFL3-203ENST00000563404 KIF27Q86VH2 1401 aa29.54■■■□□ 2.32
HDGFL3-203ENST00000563404 KIAA0586Q9BVV6 1533 aa29.49■■■□□ 2.31
HDGFL3-203ENST00000563404 KIF13AQ9H1H9 1805 aa29.48■■■□□ 2.31
HDGFL3-203ENST00000563404 CUL7Q14999 1698 aa29.47■■■□□ 2.31
HDGFL3-203ENST00000563404 ADCY10Q96PN6 1610 aa29.4■■■□□ 2.3
HDGFL3-203ENST00000563404 CARMIL1Q5VZK9 1371 aa29.37■■■□□ 2.29
HDGFL3-203ENST00000563404 AEBP2Q6ZN18 517 aaPredicted RBP29.35■■■□□ 2.29
HDGFL3-203ENST00000563404 ABCC10Q5T3U5 1492 aa29.35■■■□□ 2.29
HDGFL3-203ENST00000563404 MAPKBP1O60336 1514 aa29.35■■■□□ 2.29
HDGFL3-203ENST00000563404 NPM1P06748 294 aaKnown RBP eCLIP29.34■■■□□ 2.29
HDGFL3-203ENST00000563404 FAM69CQ0P6D2 419 aa29.32■■■□□ 2.28
HDGFL3-203ENST00000563404 DIP2BQ9P265 1576 aa29.27■■■□□ 2.28
HDGFL3-203ENST00000563404 PTPRGP23470 1445 aa29.23■■■□□ 2.27
HDGFL3-203ENST00000563404 TTBK1Q5TCY1 1321 aaPredicted RBP29.18■■■□□ 2.26
HDGFL3-203ENST00000563404 IQGAP2Q13576 1575 aa29.18■■■□□ 2.26
HDGFL3-203ENST00000563404 TNIKQ9UKE5 1360 aa29.17■■■□□ 2.26
HDGFL3-203ENST00000563404 CARMIL2Q6F5E8 1435 aa29.16■■■□□ 2.26
HDGFL3-203ENST00000563404 DISP1Q96F81 1524 aa29.1■■■□□ 2.25
HDGFL3-203ENST00000563404 ABCC2Q92887 1545 aa29.09■■■□□ 2.25
HDGFL3-203ENST00000563404 RAPGEF2Q9Y4G8 1499 aa29.08■■■□□ 2.25
HDGFL3-203ENST00000563404 TSPOAP1O95153 1857 aa29.04■■■□□ 2.24
HDGFL3-203ENST00000563404 UHRF1BP1LA0JNW5 1464 aa29.03■■■□□ 2.24
HDGFL3-203ENST00000563404 UGGT2Q9NYU1 1516 aa29.01■■■□□ 2.23
HDGFL3-203ENST00000563404 ASXL2Q76L83 1435 aa29.01■■■□□ 2.23
HDGFL3-203ENST00000563404 UACAQ9BZF9 1416 aa29.01■■■□□ 2.23
HDGFL3-203ENST00000563404 KDM6BO15054 1643 aa29.01■■■□□ 2.23
HDGFL3-203ENST00000563404 PLB1Q6P1J6 1458 aa28.96■■■□□ 2.23
HDGFL3-203ENST00000563404 KIAA0556O60303 1618 aa28.94■■■□□ 2.22
HDGFL3-203ENST00000563404 GLI2P10070 1586 aa28.92■■■□□ 2.22
HDGFL3-203ENST00000563404 KDM5BQ9UGL1 1544 aa28.9■■■□□ 2.22
HDGFL3-203ENST00000563404 PPRC1Q5VV67 1664 aaKnown RBP28.89■■■□□ 2.22
HDGFL3-203ENST00000563404 EPRSP07814 1512 aaKnown RBP28.84■■■□□ 2.21
HDGFL3-203ENST00000563404 KDM4FA0A1W2PPD8 638 aa28.84■■■□□ 2.21
HDGFL3-203ENST00000563404 ZCCHC11Q5TAX3 1644 aaKnown RBP28.83■■■□□ 2.21
HDGFL3-203ENST00000563404 CTTNBP2Q8WZ74 1663 aa28.81■■■□□ 2.2
HDGFL3-203ENST00000563404 PRXQ9BXM0 1461 aa28.79■■■□□ 2.2
HDGFL3-203ENST00000563404 MAP3K4Q9Y6R4 1608 aa28.76■■■□□ 2.2
HDGFL3-203ENST00000563404 COL17A1Q9UMD9 1497 aaPredicted RBP28.75■■■□□ 2.19
HDGFL3-203ENST00000563404 GOLGA3Q08378 1498 aa28.72■■■□□ 2.19
HDGFL3-203ENST00000563404 WDR7Q9Y4E6 1490 aa28.7■■■□□ 2.18
HDGFL3-203ENST00000563404 ABCA8O94911 1581 aa28.69■■■□□ 2.18
HDGFL3-203ENST00000563404 TEX14Q8IWB6 1497 aa28.64■■■□□ 2.17
HDGFL3-203ENST00000563404 KCNH8Q96L42 1107 aa28.56■■■□□ 2.16
HDGFL3-203ENST00000563404 ADGRL1O94910 1474 aa28.54■■■□□ 2.16
HDGFL3-203ENST00000563404 P3H3Q8IVL6 736 aa28.54■■■□□ 2.16
HDGFL3-203ENST00000563404 CD109Q6YHK3 1445 aa28.53■■■□□ 2.16
HDGFL3-203ENST00000563404 CSRNP3Q8WYN3 585 aa28.53■■■□□ 2.16
HDGFL3-203ENST00000563404 MAGI3Q5TCQ9 1506 aa28.52■■■□□ 2.16
HDGFL3-203ENST00000563404 CFAP43Q8NDM7 1665 aa28.51■■■□□ 2.15
HDGFL3-203ENST00000563404 ARID3CA6NKF2 412 aa28.48■■■□□ 2.15
HDGFL3-203ENST00000563404 ATP10BO94823 1461 aa28.46■■■□□ 2.15
HDGFL3-203ENST00000563404 SAMD9Q5K651 1589 aa28.45■■■□□ 2.14
HDGFL3-203ENST00000563404 FAM9AQ8IZU1 332 aaPredicted RBP28.35■■■□□ 2.13
HDGFL3-203ENST00000563404 EEA1Q15075 1411 aa28.35■■■□□ 2.13
HDGFL3-203ENST00000563404 RAPGEF6Q8TEU7 1601 aa28.33■■■□□ 2.13
HDGFL3-203ENST00000563404 ABCA9Q8IUA7 1624 aa28.3■■■□□ 2.12
HDGFL3-203ENST00000563404 ARAP3Q8WWN8 1544 aa28.3■■■□□ 2.12
HDGFL3-203ENST00000563404 RANGAP1P46060 587 aaPredicted RBP28.29■■■□□ 2.12
HDGFL3-203ENST00000563404 NUP153P49790 1475 aaKnown RBP28.27■■■□□ 2.12
HDGFL3-203ENST00000563404 FHOD3Q2V2M9 1422 aa28.27■■■□□ 2.12
HDGFL3-203ENST00000563404 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP28.22■■■□□ 2.11
HDGFL3-203ENST00000563404 HNRNPUL2Q1KMD3 747 aaKnown RBP28.22■■■□□ 2.11
HDGFL3-203ENST00000563404 KIF21BO75037 1637 aa28.21■■■□□ 2.11
HDGFL3-203ENST00000563404 PHLDB1Q86UU1 1377 aa28.18■■■□□ 2.1
HDGFL3-203ENST00000563404 HECW2Q9P2P5 1572 aa28.17■■■□□ 2.1
HDGFL3-203ENST00000563404 RAPGEF3O95398 923 aa28.16■■■□□ 2.1
HDGFL3-203ENST00000563404 NEO1Q92859 1461 aa28.15■■■□□ 2.1
HDGFL3-203ENST00000563404 EFCAB5A4FU69 1503 aa28.11■■■□□ 2.09
HDGFL3-203ENST00000563404 FRMPD1Q5SYB0 1578 aa28.1■■■□□ 2.09
HDGFL3-203ENST00000563404 PLEKHD1A6NEE1 506 aa28.07■■■□□ 2.08
HDGFL3-203ENST00000563404 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP28.02■■■□□ 2.08
HDGFL3-203ENST00000563404 ILDR1Q86SU0 546 aaPredicted RBP28.02■■■□□ 2.08
HDGFL3-203ENST00000563404 EHMT2Q96KQ7 1210 aa28.01■■■□□ 2.07
HDGFL3-203ENST00000563404 ADAMTSL3P82987 1691 aa28■■■□□ 2.07
HDGFL3-203ENST00000563404 CDK13Q14004 1512 aaKnown RBP27.99■■■□□ 2.07
HDGFL3-203ENST00000563404 AKNAQ7Z591 1439 aa27.98■■■□□ 2.07
HDGFL3-203ENST00000563404 TTC37Q6PGP7 1564 aa27.98■■■□□ 2.07
HDGFL3-203ENST00000563404 FANCAO15360 1455 aa27.96■■■□□ 2.07
HDGFL3-203ENST00000563404 CHIC1Q5VXU3 224 aa27.96■■■□□ 2.07
HDGFL3-203ENST00000563404 DENND4BO75064 1496 aaPredicted RBP27.95■■■□□ 2.07
HDGFL3-203ENST00000563404 PTPRMP28827 1452 aa27.95■■■□□ 2.07
HDGFL3-203ENST00000563404 RICTORQ6R327 1708 aa27.95■■■□□ 2.06
HDGFL3-203ENST00000563404 UBTFP17480 764 aaKnown RBP27.94■■■□□ 2.06
HDGFL3-203ENST00000563404 BCORL1Q5H9F3 1711 aa27.92■■■□□ 2.06
HDGFL3-203ENST00000563404 ARHGAP35Q9NRY4 1499 aa27.91■■■□□ 2.06
HDGFL3-203ENST00000563404 ARHGEF40Q8TER5 1519 aa27.91■■■□□ 2.06
HDGFL3-203ENST00000563404 CFAP74Q9C0B2 1584 aa27.9■■■□□ 2.06
HDGFL3-203ENST00000563404 ARID4BQ4LE39 1312 aaPredicted RBP27.89■■■□□ 2.05
HDGFL3-203ENST00000563404 MADDQ8WXG6 1647 aa27.88■■■□□ 2.05
HDGFL3-203ENST00000563404 FMN1Q68DA7 1419 aa27.85■■■□□ 2.05
HDGFL3-203ENST00000563404 ZMYM4Q5VZL5 1548 aa27.84■■■□□ 2.05
HDGFL3-203ENST00000563404 PLCH2O75038 1416 aa27.84■■■□□ 2.05
HDGFL3-203ENST00000563404 HECW1Q76N89 1606 aa27.83■■■□□ 2.05
HDGFL3-203ENST00000563404 ATP1B4Q9UN42 357 aaPredicted RBP27.83■■■□□ 2.05
HDGFL3-203ENST00000563404 YEATS2Q9ULM3 1422 aa27.82■■■□□ 2.04
HDGFL3-203ENST00000563404 SIGLEC1Q9BZZ2 1709 aa27.8■■■□□ 2.04
HDGFL3-203ENST00000563404 ZFYVE16Q7Z3T8 1539 aa27.78■■■□□ 2.04
HDGFL3-203ENST00000563404 SCAPERQ9BY12 1400 aa27.78■■■□□ 2.04
HDGFL3-203ENST00000563404 POGZQ7Z3K3 1410 aa27.76■■■□□ 2.04
HDGFL3-203ENST00000563404 RIMS1Q86UR5 1692 aaKnown RBP27.75■■■□□ 2.03
Retrieved 100 of 20,778 RNA–protein pairs in 8.9 ms