RNA–Protein interactions for RNA: ENST00000562722.1

SF3B3-202, Transcript of splicing factor 3b subunit 3, humanhuman

TSL 2

Gene SF3B3, Length 881 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B3-202ENST00000562722 KIF27Q86VH2 1401 aa22.72■■□□□ 1.23
SF3B3-202ENST00000562722 IGF1RP08069 1367 aa22.68■■□□□ 1.22
SF3B3-202ENST00000562722 NPM1P06748 294 aaKnown RBP eCLIP22.67■■□□□ 1.22
SF3B3-202ENST00000562722 CUL7Q14999 1698 aa22.65■■□□□ 1.22
SF3B3-202ENST00000562722 KIAA0586Q9BVV6 1533 aa22.63■■□□□ 1.21
SF3B3-202ENST00000562722 KIF13AQ9H1H9 1805 aa22.59■■□□□ 1.21
SF3B3-202ENST00000562722 FAM69CQ0P6D2 419 aa22.59■■□□□ 1.21
SF3B3-202ENST00000562722 CARMIL1Q5VZK9 1371 aa22.56■■□□□ 1.2
SF3B3-202ENST00000562722 ADCY10Q96PN6 1610 aa22.55■■□□□ 1.2
SF3B3-202ENST00000562722 TTBK1Q5TCY1 1321 aaPredicted RBP22.54■■□□□ 1.2
SF3B3-202ENST00000562722 ABCC10Q5T3U5 1492 aa22.54■■□□□ 1.2
SF3B3-202ENST00000562722 MAPKBP1O60336 1514 aa22.53■■□□□ 1.2
SF3B3-202ENST00000562722 PTPRGP23470 1445 aa22.48■■□□□ 1.19
SF3B3-202ENST00000562722 DIP2BQ9P265 1576 aa22.47■■□□□ 1.19
SF3B3-202ENST00000562722 CARMIL2Q6F5E8 1435 aa22.47■■□□□ 1.19
SF3B3-202ENST00000562722 TNIKQ9UKE5 1360 aa22.43■■□□□ 1.18
SF3B3-202ENST00000562722 IQGAP2Q13576 1575 aa22.42■■□□□ 1.18
SF3B3-202ENST00000562722 ABCC2Q92887 1545 aa22.35■■□□□ 1.17
SF3B3-202ENST00000562722 RAPGEF2Q9Y4G8 1499 aa22.34■■□□□ 1.17
SF3B3-202ENST00000562722 KDM6BO15054 1643 aa22.34■■□□□ 1.17
SF3B3-202ENST00000562722 TSPOAP1O95153 1857 aa22.33■■□□□ 1.17
SF3B3-202ENST00000562722 DISP1Q96F81 1524 aa22.3■■□□□ 1.16
SF3B3-202ENST00000562722 ASXL2Q76L83 1435 aa22.3■■□□□ 1.16
SF3B3-202ENST00000562722 UACAQ9BZF9 1416 aa22.3■■□□□ 1.16
SF3B3-202ENST00000562722 PLB1Q6P1J6 1458 aa22.28■■□□□ 1.16
SF3B3-202ENST00000562722 UHRF1BP1LA0JNW5 1464 aa22.27■■□□□ 1.16
SF3B3-202ENST00000562722 UGGT2Q9NYU1 1516 aa22.25■■□□□ 1.15
SF3B3-202ENST00000562722 KIAA0556O60303 1618 aa22.21■■□□□ 1.15
SF3B3-202ENST00000562722 GLI2P10070 1586 aa22.2■■□□□ 1.14
SF3B3-202ENST00000562722 KDM5BQ9UGL1 1544 aa22.17■■□□□ 1.14
SF3B3-202ENST00000562722 ZCCHC11Q5TAX3 1644 aaKnown RBP22.14■■□□□ 1.14
SF3B3-202ENST00000562722 EPRSP07814 1512 aaKnown RBP22.14■■□□□ 1.13
SF3B3-202ENST00000562722 CTTNBP2Q8WZ74 1663 aa22.14■■□□□ 1.13
SF3B3-202ENST00000562722 PPRC1Q5VV67 1664 aaKnown RBP22.12■■□□□ 1.13
SF3B3-202ENST00000562722 GOLGA3Q08378 1498 aa22.12■■□□□ 1.13
SF3B3-202ENST00000562722 KDM4FA0A1W2PPD8 638 aa22.12■■□□□ 1.13
SF3B3-202ENST00000562722 TEX14Q8IWB6 1497 aa22.08■■□□□ 1.12
SF3B3-202ENST00000562722 MAP3K4Q9Y6R4 1608 aa22.06■■□□□ 1.12
SF3B3-202ENST00000562722 PRXQ9BXM0 1461 aa22.06■■□□□ 1.12
SF3B3-202ENST00000562722 WDR7Q9Y4E6 1490 aa22.06■■□□□ 1.12
SF3B3-202ENST00000562722 FAM9AQ8IZU1 332 aaPredicted RBP22.01■■□□□ 1.11
SF3B3-202ENST00000562722 COL17A1Q9UMD9 1497 aaPredicted RBP22.01■■□□□ 1.11
SF3B3-202ENST00000562722 KCNH8Q96L42 1107 aa22■■□□□ 1.11
SF3B3-202ENST00000562722 ABCA8O94911 1581 aa21.99■■□□□ 1.11
SF3B3-202ENST00000562722 P3H3Q8IVL6 736 aa21.97■■□□□ 1.11
SF3B3-202ENST00000562722 ADGRL1O94910 1474 aa21.96■■□□□ 1.11
SF3B3-202ENST00000562722 ARID3CA6NKF2 412 aa21.95■■□□□ 1.1
SF3B3-202ENST00000562722 CD109Q6YHK3 1445 aa21.95■■□□□ 1.1
SF3B3-202ENST00000562722 CSRNP3Q8WYN3 585 aa21.92■■□□□ 1.1
SF3B3-202ENST00000562722 CFAP43Q8NDM7 1665 aa21.9■■□□□ 1.1
SF3B3-202ENST00000562722 MAGI3Q5TCQ9 1506 aa21.9■■□□□ 1.1
SF3B3-202ENST00000562722 RANGAP1P46060 587 aaPredicted RBP21.85■■□□□ 1.09
SF3B3-202ENST00000562722 ATP10BO94823 1461 aa21.83■■□□□ 1.08
SF3B3-202ENST00000562722 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP21.82■■□□□ 1.08
SF3B3-202ENST00000562722 HNRNPUL2Q1KMD3 747 aaKnown RBP21.82■■□□□ 1.08
SF3B3-202ENST00000562722 SAMD9Q5K651 1589 aa21.81■■□□□ 1.08
SF3B3-202ENST00000562722 EEA1Q15075 1411 aa21.8■■□□□ 1.08
SF3B3-202ENST00000562722 RAPGEF6Q8TEU7 1601 aa21.77■■□□□ 1.08
SF3B3-202ENST00000562722 FHOD3Q2V2M9 1422 aa21.72■■□□□ 1.07
SF3B3-202ENST00000562722 ABCA9Q8IUA7 1624 aa21.72■■□□□ 1.07
SF3B3-202ENST00000562722 ARAP3Q8WWN8 1544 aa21.71■■□□□ 1.07
SF3B3-202ENST00000562722 KIF21BO75037 1637 aa21.69■■□□□ 1.06
SF3B3-202ENST00000562722 NUP153P49790 1475 aaKnown RBP21.69■■□□□ 1.06
SF3B3-202ENST00000562722 PHLDB1Q86UU1 1377 aa21.68■■□□□ 1.06
SF3B3-202ENST00000562722 HECW2Q9P2P5 1572 aa21.67■■□□□ 1.06
SF3B3-202ENST00000562722 RAPGEF3O95398 923 aa21.65■■□□□ 1.06
SF3B3-202ENST00000562722 NEO1Q92859 1461 aa21.64■■□□□ 1.06
SF3B3-202ENST00000562722 PLEKHD1A6NEE1 506 aa21.63■■□□□ 1.05
SF3B3-202ENST00000562722 EFCAB5A4FU69 1503 aa21.61■■□□□ 1.05
SF3B3-202ENST00000562722 EHMT2Q96KQ7 1210 aa21.61■■□□□ 1.05
SF3B3-202ENST00000562722 ARID4BQ4LE39 1312 aaPredicted RBP21.56■■□□□ 1.04
SF3B3-202ENST00000562722 ILDR1Q86SU0 546 aaPredicted RBP21.56■■□□□ 1.04
SF3B3-202ENST00000562722 UBTFP17480 764 aaKnown RBP21.55■■□□□ 1.04
SF3B3-202ENST00000562722 FRMPD1Q5SYB0 1578 aa21.53■■□□□ 1.04
SF3B3-202ENST00000562722 ATP1B4Q9UN42 357 aaPredicted RBP21.52■■□□□ 1.04
SF3B3-202ENST00000562722 FANCAO15360 1455 aa21.52■■□□□ 1.03
SF3B3-202ENST00000562722 DENND4BO75064 1496 aaPredicted RBP21.52■■□□□ 1.03
SF3B3-202ENST00000562722 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP21.5■■□□□ 1.03
SF3B3-202ENST00000562722 AKNAQ7Z591 1439 aa21.5■■□□□ 1.03
SF3B3-202ENST00000562722 CDK13Q14004 1512 aaKnown RBP21.5■■□□□ 1.03
SF3B3-202ENST00000562722 CFAP74Q9C0B2 1584 aa21.49■■□□□ 1.03
SF3B3-202ENST00000562722 PTPRMP28827 1452 aa21.49■■□□□ 1.03
SF3B3-202ENST00000562722 TTC37Q6PGP7 1564 aa21.48■■□□□ 1.03
SF3B3-202ENST00000562722 ADAMTSL3P82987 1691 aa21.47■■□□□ 1.03
SF3B3-202ENST00000562722 ARHGEF40Q8TER5 1519 aa21.45■■□□□ 1.02
SF3B3-202ENST00000562722 FMN1Q68DA7 1419 aa21.44■■□□□ 1.02
SF3B3-202ENST00000562722 BCORL1Q5H9F3 1711 aa21.43■■□□□ 1.02
SF3B3-202ENST00000562722 RICTORQ6R327 1708 aa21.43■■□□□ 1.02
SF3B3-202ENST00000562722 CHIC1Q5VXU3 224 aa21.42■■□□□ 1.02
SF3B3-202ENST00000562722 HECW1Q76N89 1606 aa21.42■■□□□ 1.02
SF3B3-202ENST00000562722 MADDQ8WXG6 1647 aa21.42■■□□□ 1.02
SF3B3-202ENST00000562722 ARHGAP35Q9NRY4 1499 aa21.39■■□□□ 1.02
SF3B3-202ENST00000562722 CDK11AQ9UQ88 783 aaPredicted RBP21.39■■□□□ 1.01
SF3B3-202ENST00000562722 ZFYVE16Q7Z3T8 1539 aa21.38■■□□□ 1.01
SF3B3-202ENST00000562722 PLPPR3Q6T4P5 718 aa21.37■■□□□ 1.01
SF3B3-202ENST00000562722 ZMYM4Q5VZL5 1548 aa21.37■■□□□ 1.01
SF3B3-202ENST00000562722 PLCH2O75038 1416 aa21.37■■□□□ 1.01
SF3B3-202ENST00000562722 POGZQ7Z3K3 1410 aa21.37■■□□□ 1.01
SF3B3-202ENST00000562722 SCAPERQ9BY12 1400 aa21.37■■□□□ 1.01
SF3B3-202ENST00000562722 RIMS1Q86UR5 1692 aaKnown RBP21.35■■□□□ 1.01
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms