RNA–Protein interactions for RNA: ENST00000562543.5

TCF4-213, Transcript of transcription factor 4, humanhuman

TSL 1 (best)

Gene TCF4, Length 598 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCF4-213ENST00000562543 SMARCA2P51531 1590 aa13.41□□□□□ -0.26
TCF4-213ENST00000562543 KIF21AQ7Z4S6 1674 aa13.35□□□□□ -0.27
TCF4-213ENST00000562543 NCAPD3P42695 1498 aa13.35□□□□□ -0.27
TCF4-213ENST00000562543 ARHGEF11O15085 1522 aa13.34□□□□□ -0.27
TCF4-213ENST00000562543 GABBR2O75899 941 aa13.32□□□□□ -0.28
TCF4-213ENST00000562543 FARP1Q9Y4F1 1045 aaPredicted RBP13.3□□□□□ -0.28
TCF4-213ENST00000562543 DCAF1Q9Y4B6 1507 aa13.29□□□□□ -0.28
TCF4-213ENST00000562543 SPDYE4A6NLX3 237 aa13.28□□□□□ -0.28
TCF4-213ENST00000562543 LAMC3Q9Y6N6 1575 aa13.25□□□□□ -0.29
TCF4-213ENST00000562543 CD44P16070 742 aaKnown RBP13.24□□□□□ -0.29
TCF4-213ENST00000562543 WDR62O43379 1518 aa13.21□□□□□ -0.29
TCF4-213ENST00000562543 HMGXB3Q12766 1538 aa13.19□□□□□ -0.3
TCF4-213ENST00000562543 CREBZFQ9NS37 354 aa13.19□□□□□ -0.3
TCF4-213ENST00000562543 CYB5RLQ6IPT4 315 aa13.17□□□□□ -0.3
TCF4-213ENST00000562543 MRC2Q9UBG0 1479 aa13.16□□□□□ -0.3
TCF4-213ENST00000562543 PDS5BQ9NTI5 1447 aa13.15□□□□□ -0.3
TCF4-213ENST00000562543 ZCCHC6Q5VYS8 1495 aaKnown RBP13.15□□□□□ -0.3
TCF4-213ENST00000562543 ATAD2BQ9ULI0 1458 aa13.14□□□□□ -0.31
TCF4-213ENST00000562543 ARAP1Q96P48 1450 aa13.13□□□□□ -0.31
TCF4-213ENST00000562543 STAG3Q9UJ98 1225 aa13.12□□□□□ -0.31
TCF4-213ENST00000562543 POTEIP0CG38 1075 aa13.08□□□□□ -0.32
TCF4-213ENST00000562543 ZRANB1Q9UGI0 708 aa13.06□□□□□ -0.32
TCF4-213ENST00000562543 LHX8Q68G74 356 aa13□□□□□ -0.33
TCF4-213ENST00000562543 ZNF579Q8NAF0 562 aaKnown RBP12.97□□□□□ -0.33
TCF4-213ENST00000562543 MNX1P50219 401 aaPredicted RBP12.96□□□□□ -0.33
TCF4-213ENST00000562543 GALR2O43603 387 aaPredicted RBP12.93□□□□□ -0.34
TCF4-213ENST00000562543 BAZ1BQ9UIG0 1483 aaKnown RBP12.92□□□□□ -0.34
TCF4-213ENST00000562543 DCBLD2Q96PD2 775 aa12.92□□□□□ -0.34
TCF4-213ENST00000562543 PHF12Q96QT6 1004 aa12.91□□□□□ -0.34
TCF4-213ENST00000562543 PROM2Q8N271 834 aa12.89□□□□□ -0.35
TCF4-213ENST00000562543 RSF1Q96T23 1441 aaPredicted RBP12.88□□□□□ -0.35
TCF4-213ENST00000562543 CLCN6P51797 869 aa12.88□□□□□ -0.35
TCF4-213ENST00000562543 SMARCA4P51532 1647 aa12.87□□□□□ -0.35
TCF4-213ENST00000562543 CEP164Q9UPV0 1460 aa12.85□□□□□ -0.35
TCF4-213ENST00000562543 NPM1P06748 294 aaKnown RBP eCLIP12.85□□□□□ -0.35
TCF4-213ENST00000562543 LMTK3Q96Q04 1460 aa12.85□□□□□ -0.35
TCF4-213ENST00000562543 CADPSQ9ULU8 1353 aa12.84□□□□□ -0.35
TCF4-213ENST00000562543 PAK3O75914 559 aaPredicted RBP12.84□□□□□ -0.35
TCF4-213ENST00000562543 ERCC6L2Q5T890 1561 aa12.82□□□□□ -0.36
TCF4-213ENST00000562543 KDM4FA0A1W2PPD8 638 aa12.8□□□□□ -0.36
TCF4-213ENST00000562543 CHD1O14646 1710 aa12.79□□□□□ -0.36
TCF4-213ENST00000562543 PEG3Q9GZU2 1588 aa12.78□□□□□ -0.36
TCF4-213ENST00000562543 SOCS7O14512 581 aa12.78□□□□□ -0.36
TCF4-213ENST00000562543 FBXO41Q8TF61 875 aa12.78□□□□□ -0.36
TCF4-213ENST00000562543 TSPYL2Q9H2G4 693 aaPredicted RBP12.76□□□□□ -0.37
TCF4-213ENST00000562543 ZNF608Q9ULD9 1512 aaPredicted RBP12.74□□□□□ -0.37
TCF4-213ENST00000562543 URB2Q14146 1524 aaKnown RBP12.72□□□□□ -0.37
TCF4-213ENST00000562543 PELP1Q8IZL8 1130 aaKnown RBP12.72□□□□□ -0.37
TCF4-213ENST00000562543 FANCD2Q9BXW9 1451 aa12.72□□□□□ -0.37
TCF4-213ENST00000562543 HECW2Q9P2P5 1572 aa12.7□□□□□ -0.38
TCF4-213ENST00000562543 MIER1Q8N108 512 aa12.7□□□□□ -0.38
TCF4-213ENST00000562543 MS4A3Q96HJ5 214 aa12.7□□□□□ -0.38
TCF4-213ENST00000562543 POTEB2H3BUK9 544 aa12.68□□□□□ -0.38
TCF4-213ENST00000562543 EIF4G3O43432 1585 aaKnown RBP12.66□□□□□ -0.38
TCF4-213ENST00000562543 ILDR2Q71H61 639 aa12.65□□□□□ -0.38
TCF4-213ENST00000562543 CCDC61Q9Y6R9 512 aa12.64□□□□□ -0.39
TCF4-213ENST00000562543 IFT140Q96RY7 1462 aa12.64□□□□□ -0.39
TCF4-213ENST00000562543 CLASP1Q7Z460 1538 aa12.62□□□□□ -0.39
TCF4-213ENST00000562543 KIF13AQ9H1H9 1805 aa12.62□□□□□ -0.39
TCF4-213ENST00000562543 RASEFQ8IZ41 740 aa12.61□□□□□ -0.39
TCF4-213ENST00000562543 FKBP8Q14318 412 aa12.59□□□□□ -0.39
TCF4-213ENST00000562543 OTUD5Q96G74 571 aa12.59□□□□□ -0.39
TCF4-213ENST00000562543 ATMINO43313 823 aaPredicted RBP12.58□□□□□ -0.4
TCF4-213ENST00000562543 PLEKHG5O94827 1062 aa12.57□□□□□ -0.4
TCF4-213ENST00000562543 ASTLQ6HA08 431 aaPredicted RBP12.57□□□□□ -0.4
TCF4-213ENST00000562543 PLCD3Q8N3E9 789 aa12.57□□□□□ -0.4
TCF4-213ENST00000562543 KIF12Q96FN5 646 aa12.57□□□□□ -0.4
TCF4-213ENST00000562543 TRPC6Q9Y210 931 aa12.56□□□□□ -0.4
TCF4-213ENST00000562543 MAP3K13O43283 966 aa12.53□□□□□ -0.4
TCF4-213ENST00000562543 METRNQ9UJH8 293 aa12.53□□□□□ -0.4
TCF4-213ENST00000562543 GAPVD1Q14C86 1478 aa12.52□□□□□ -0.41
TCF4-213ENST00000562543 ATN1P54259 1190 aaPredicted RBP12.51□□□□□ -0.41
TCF4-213ENST00000562543 CFTRP13569 1480 aa12.5□□□□□ -0.41
TCF4-213ENST00000562543 SYNJ2O15056 1496 aa12.49□□□□□ -0.41
TCF4-213ENST00000562543 POTEJP0CG39 1038 aa12.49□□□□□ -0.41
TCF4-213ENST00000562543 DISP3Q9P2K9 1392 aa12.47□□□□□ -0.41
TCF4-213ENST00000562543 KDM6BO15054 1643 aa12.47□□□□□ -0.41
TCF4-213ENST00000562543 ADGRL1O94910 1474 aa12.46□□□□□ -0.41
TCF4-213ENST00000562543 SLC39A7Q92504 469 aa12.46□□□□□ -0.41
TCF4-213ENST00000562543 BMP2KQ9NSY1 1161 aaPredicted RBP12.46□□□□□ -0.41
TCF4-213ENST00000562543 SYNJ1O43426 1573 aa12.46□□□□□ -0.42
TCF4-213ENST00000562543 C7P10643 843 aa12.45□□□□□ -0.42
TCF4-213ENST00000562543 NUBP1P53384 320 aa12.44□□□□□ -0.42
TCF4-213ENST00000562543 AQRO60306 1485 aaKnown RBP eCLIP12.43□□□□□ -0.42
TCF4-213ENST00000562543 MROH2BQ7Z745 1585 aa12.41□□□□□ -0.42
TCF4-213ENST00000562543 TARBP1Q13395 1621 aaKnown RBP12.4□□□□□ -0.42
TCF4-213ENST00000562543 POTEFA5A3E0 1075 aa12.39□□□□□ -0.43
TCF4-213ENST00000562543 TOPBP1Q92547 1522 aa12.37□□□□□ -0.43
TCF4-213ENST00000562543 PCDHB13Q9Y5F0 798 aa12.36□□□□□ -0.43
TCF4-213ENST00000562543 PRDM2Q13029 1718 aa12.36□□□□□ -0.43
TCF4-213ENST00000562543 TTLL13PA6NNM8 815 aa12.35□□□□□ -0.43
TCF4-213ENST00000562543 TIE1P35590 1138 aa12.35□□□□□ -0.43
TCF4-213ENST00000562543 ZBTB47Q9UFB7 747 aaPredicted RBP12.35□□□□□ -0.43
TCF4-213ENST00000562543 SPATA31D1Q6ZQQ2 1576 aa12.35□□□□□ -0.43
TCF4-213ENST00000562543 ABCC10Q5T3U5 1492 aa12.33□□□□□ -0.44
TCF4-213ENST00000562543 IFNL1Q8IU54 200 aa12.32□□□□□ -0.44
TCF4-213ENST00000562543 COLQQ9Y215 455 aaPredicted RBP12.32□□□□□ -0.44
TCF4-213ENST00000562543 SNAPC4Q5SXM2 1469 aa12.31□□□□□ -0.44
TCF4-213ENST00000562543 DIP2BQ9P265 1576 aa12.3□□□□□ -0.44
TCF4-213ENST00000562543 FAM212AQ96EL1 285 aa12.29□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 35.8 ms