RNA–Protein interactions for RNA: ENST00000561713.1

VPS35-202, Transcript of VPS35, retromer complex component, humanhuman

TSL 4

Gene VPS35, Length 589 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-202ENST00000561713 RUSC2Q8N2Y8 1516 aa33.44■■■□□ 2.94
VPS35-202ENST00000561713 NPM1P06748 294 aaKnown RBP eCLIP33.3■■■□□ 2.92
VPS35-202ENST00000561713 FAM69CQ0P6D2 419 aa33.3■■■□□ 2.92
VPS35-202ENST00000561713 IGF1RP08069 1367 aa33.28■■■□□ 2.92
VPS35-202ENST00000561713 ABCC10Q5T3U5 1492 aa33.28■■■□□ 2.92
VPS35-202ENST00000561713 ADCY10Q96PN6 1610 aa33.25■■■□□ 2.91
VPS35-202ENST00000561713 KIAA0586Q9BVV6 1533 aa33.24■■■□□ 2.91
VPS35-202ENST00000561713 MAPKBP1O60336 1514 aa33.23■■■□□ 2.91
VPS35-202ENST00000561713 KIF27Q86VH2 1401 aa33.2■■■□□ 2.91
VPS35-202ENST00000561713 CUL7Q14999 1698 aa33.18■■■□□ 2.9
VPS35-202ENST00000561713 DIP2BQ9P265 1576 aa33.17■■■□□ 2.9
VPS35-202ENST00000561713 CARMIL1Q5VZK9 1371 aa33.03■■■□□ 2.88
VPS35-202ENST00000561713 PTPRGP23470 1445 aa33.02■■■□□ 2.88
VPS35-202ENST00000561713 TTBK1Q5TCY1 1321 aaPredicted RBP33.02■■■□□ 2.88
VPS35-202ENST00000561713 TSPOAP1O95153 1857 aa32.97■■■□□ 2.87
VPS35-202ENST00000561713 KDM6BO15054 1643 aa32.97■■■□□ 2.87
VPS35-202ENST00000561713 TNIKQ9UKE5 1360 aa32.92■■■□□ 2.86
VPS35-202ENST00000561713 CARMIL2Q6F5E8 1435 aa32.92■■■□□ 2.86
VPS35-202ENST00000561713 ABCC2Q92887 1545 aa32.87■■■□□ 2.85
VPS35-202ENST00000561713 IQGAP2Q13576 1575 aa32.87■■■□□ 2.85
VPS35-202ENST00000561713 KDM4FA0A1W2PPD8 638 aa32.86■■■□□ 2.85
VPS35-202ENST00000561713 ASXL2Q76L83 1435 aa32.82■■■□□ 2.84
VPS35-202ENST00000561713 DISP1Q96F81 1524 aa32.77■■■□□ 2.84
VPS35-202ENST00000561713 PLB1Q6P1J6 1458 aa32.77■■■□□ 2.84
VPS35-202ENST00000561713 UHRF1BP1LA0JNW5 1464 aa32.76■■■□□ 2.84
VPS35-202ENST00000561713 UACAQ9BZF9 1416 aa32.75■■■□□ 2.83
VPS35-202ENST00000561713 GLI2P10070 1586 aa32.72■■■□□ 2.83
VPS35-202ENST00000561713 PPRC1Q5VV67 1664 aaKnown RBP32.71■■■□□ 2.83
VPS35-202ENST00000561713 RAPGEF2Q9Y4G8 1499 aa32.67■■■□□ 2.82
VPS35-202ENST00000561713 UGGT2Q9NYU1 1516 aa32.65■■■□□ 2.82
VPS35-202ENST00000561713 KDM5BQ9UGL1 1544 aa32.63■■■□□ 2.81
VPS35-202ENST00000561713 EPRSP07814 1512 aaKnown RBP32.61■■■□□ 2.81
VPS35-202ENST00000561713 CTTNBP2Q8WZ74 1663 aa32.59■■■□□ 2.81
VPS35-202ENST00000561713 KIAA0556O60303 1618 aa32.58■■■□□ 2.81
VPS35-202ENST00000561713 COL17A1Q9UMD9 1497 aaPredicted RBP32.56■■■□□ 2.8
VPS35-202ENST00000561713 ZCCHC11Q5TAX3 1644 aaKnown RBP32.56■■■□□ 2.8
VPS35-202ENST00000561713 MAP3K4Q9Y6R4 1608 aa32.55■■■□□ 2.8
VPS35-202ENST00000561713 ADGRL1O94910 1474 aa32.48■■■□□ 2.79
VPS35-202ENST00000561713 TEX14Q8IWB6 1497 aa32.46■■■□□ 2.79
VPS35-202ENST00000561713 WDR7Q9Y4E6 1490 aa32.42■■■□□ 2.78
VPS35-202ENST00000561713 PRXQ9BXM0 1461 aa32.35■■■□□ 2.77
VPS35-202ENST00000561713 GOLGA3Q08378 1498 aa32.34■■■□□ 2.77
VPS35-202ENST00000561713 KCNH8Q96L42 1107 aa32.31■■■□□ 2.76
VPS35-202ENST00000561713 ABCA8O94911 1581 aa32.31■■■□□ 2.76
VPS35-202ENST00000561713 CD109Q6YHK3 1445 aa32.27■■■□□ 2.76
VPS35-202ENST00000561713 MAGI3Q5TCQ9 1506 aa32.24■■■□□ 2.75
VPS35-202ENST00000561713 CFAP43Q8NDM7 1665 aa32.23■■■□□ 2.75
VPS35-202ENST00000561713 ILDR1Q86SU0 546 aaPredicted RBP32.2■■■□□ 2.75
VPS35-202ENST00000561713 ARID3CA6NKF2 412 aa32.14■■■□□ 2.74
VPS35-202ENST00000561713 HECW2Q9P2P5 1572 aa32.14■■■□□ 2.74
VPS35-202ENST00000561713 P3H3Q8IVL6 736 aa32.13■■■□□ 2.73
VPS35-202ENST00000561713 ATP10BO94823 1461 aa32.07■■■□□ 2.72
VPS35-202ENST00000561713 SAMD9Q5K651 1589 aa32.04■■■□□ 2.72
VPS35-202ENST00000561713 FAM9AQ8IZU1 332 aaPredicted RBP32.04■■■□□ 2.72
VPS35-202ENST00000561713 CSRNP3Q8WYN3 585 aa32.03■■■□□ 2.72
VPS35-202ENST00000561713 ARAP3Q8WWN8 1544 aa32.01■■■□□ 2.72
VPS35-202ENST00000561713 KIF21BO75037 1637 aa32■■■□□ 2.71
VPS35-202ENST00000561713 EEA1Q15075 1411 aa31.97■■■□□ 2.71
VPS35-202ENST00000561713 ABCA9Q8IUA7 1624 aa31.93■■■□□ 2.7
VPS35-202ENST00000561713 RAPGEF6Q8TEU7 1601 aa31.89■■■□□ 2.7
VPS35-202ENST00000561713 PHLDB1Q86UU1 1377 aa31.87■■■□□ 2.69
VPS35-202ENST00000561713 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP31.87■■■□□ 2.69
VPS35-202ENST00000561713 RAPGEF3O95398 923 aa31.87■■■□□ 2.69
VPS35-202ENST00000561713 HNRNPUL2Q1KMD3 747 aaKnown RBP31.87■■■□□ 2.69
VPS35-202ENST00000561713 RANGAP1P46060 587 aaPredicted RBP31.85■■■□□ 2.69
VPS35-202ENST00000561713 NEO1Q92859 1461 aa31.81■■■□□ 2.68
VPS35-202ENST00000561713 FHOD3Q2V2M9 1422 aa31.81■■■□□ 2.68
VPS35-202ENST00000561713 NUP153P49790 1475 aaKnown RBP31.8■■■□□ 2.68
VPS35-202ENST00000561713 ADAMTSL3P82987 1691 aa31.76■■■□□ 2.67
VPS35-202ENST00000561713 FRMPD1Q5SYB0 1578 aa31.74■■■□□ 2.67
VPS35-202ENST00000561713 PTPRMP28827 1452 aa31.74■■■□□ 2.67
VPS35-202ENST00000561713 EHMT2Q96KQ7 1210 aa31.7■■■□□ 2.67
VPS35-202ENST00000561713 EFCAB5A4FU69 1503 aa31.69■■■□□ 2.66
VPS35-202ENST00000561713 ARID4BQ4LE39 1312 aaPredicted RBP31.68■■■□□ 2.66
VPS35-202ENST00000561713 CHIC1Q5VXU3 224 aa31.67■■■□□ 2.66
VPS35-202ENST00000561713 PLEKHD1A6NEE1 506 aa31.66■■■□□ 2.66
VPS35-202ENST00000561713 BCORL1Q5H9F3 1711 aa31.65■■■□□ 2.66
VPS35-202ENST00000561713 MADDQ8WXG6 1647 aa31.61■■■□□ 2.65
VPS35-202ENST00000561713 DENND4BO75064 1496 aaPredicted RBP31.59■■■□□ 2.65
VPS35-202ENST00000561713 AKNAQ7Z591 1439 aa31.59■■■□□ 2.65
VPS35-202ENST00000561713 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP31.57■■■□□ 2.64
VPS35-202ENST00000561713 FANCAO15360 1455 aa31.57■■■□□ 2.64
VPS35-202ENST00000561713 ARHGEF40Q8TER5 1519 aa31.56■■■□□ 2.64
VPS35-202ENST00000561713 RICTORQ6R327 1708 aa31.56■■■□□ 2.64
VPS35-202ENST00000561713 TTC37Q6PGP7 1564 aa31.52■■■□□ 2.64
VPS35-202ENST00000561713 CDK13Q14004 1512 aaKnown RBP31.51■■■□□ 2.63
VPS35-202ENST00000561713 FBXO41Q8TF61 875 aa31.5■■■□□ 2.63
VPS35-202ENST00000561713 PCF11O94913 1555 aaKnown RBP31.5■■■□□ 2.63
VPS35-202ENST00000561713 CFAP74Q9C0B2 1584 aa31.5■■■□□ 2.63
VPS35-202ENST00000561713 LMTK3Q96Q04 1460 aa31.48■■■□□ 2.63
VPS35-202ENST00000561713 RIMS1Q86UR5 1692 aaKnown RBP31.48■■■□□ 2.63
VPS35-202ENST00000561713 UBTFP17480 764 aaKnown RBP31.47■■■□□ 2.63
VPS35-202ENST00000561713 ARHGAP35Q9NRY4 1499 aa31.45■■■□□ 2.62
VPS35-202ENST00000561713 YEATS2Q9ULM3 1422 aa31.44■■■□□ 2.62
VPS35-202ENST00000561713 ZMYM4Q5VZL5 1548 aa31.44■■■□□ 2.62
VPS35-202ENST00000561713 HECW1Q76N89 1606 aa31.42■■■□□ 2.62
VPS35-202ENST00000561713 SIGLEC1Q9BZZ2 1709 aa31.41■■■□□ 2.62
VPS35-202ENST00000561713 ZFYVE16Q7Z3T8 1539 aa31.41■■■□□ 2.62
VPS35-202ENST00000561713 PLPPR3Q6T4P5 718 aa31.4■■■□□ 2.62
VPS35-202ENST00000561713 POGZQ7Z3K3 1410 aa31.39■■■□□ 2.62
Retrieved 100 of 20,778 RNA–protein pairs in 9.8 ms