RNA–Protein interactions for RNA: ENST00000561673.1

CLK3-205, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 639 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-205ENST00000561673 JPH4Q96JJ6 628 aa17.8■□□□□ 0.44
CLK3-205ENST00000561673 SHROOM2Q13796 1616 aa17.77■□□□□ 0.44
CLK3-205ENST00000561673 PRG4Q92954 1404 aaPredicted RBP17.75■□□□□ 0.43
CLK3-205ENST00000561673 CARMIL1Q5VZK9 1371 aa17.71■□□□□ 0.43
CLK3-205ENST00000561673 RUSC2Q8N2Y8 1516 aa17.69■□□□□ 0.42
CLK3-205ENST00000561673 CUL7Q14999 1698 aa17.69■□□□□ 0.42
CLK3-205ENST00000561673 KIAA0586Q9BVV6 1533 aa17.67■□□□□ 0.42
CLK3-205ENST00000561673 RAPGEF2Q9Y4G8 1499 aa17.55■□□□□ 0.4
CLK3-205ENST00000561673 NPM1P06748 294 aaKnown RBP eCLIP17.53■□□□□ 0.4
CLK3-205ENST00000561673 PTPRGP23470 1445 aa17.51■□□□□ 0.39
CLK3-205ENST00000561673 TTBK1Q5TCY1 1321 aaPredicted RBP17.5■□□□□ 0.39
CLK3-205ENST00000561673 CARMIL2Q6F5E8 1435 aa17.5■□□□□ 0.39
CLK3-205ENST00000561673 IQGAP2Q13576 1575 aa17.49■□□□□ 0.39
CLK3-205ENST00000561673 ADCY10Q96PN6 1610 aa17.48■□□□□ 0.39
CLK3-205ENST00000561673 TNIKQ9UKE5 1360 aa17.48■□□□□ 0.39
CLK3-205ENST00000561673 FAM69CQ0P6D2 419 aa17.45■□□□□ 0.38
CLK3-205ENST00000561673 DISP1Q96F81 1524 aa17.44■□□□□ 0.38
CLK3-205ENST00000561673 MAPKBP1O60336 1514 aa17.42■□□□□ 0.38
CLK3-205ENST00000561673 ABCC10Q5T3U5 1492 aa17.42■□□□□ 0.38
CLK3-205ENST00000561673 PRXQ9BXM0 1461 aa17.41■□□□□ 0.38
CLK3-205ENST00000561673 UGGT2Q9NYU1 1516 aa17.41■□□□□ 0.38
CLK3-205ENST00000561673 KIF13AQ9H1H9 1805 aa17.39■□□□□ 0.37
CLK3-205ENST00000561673 UACAQ9BZF9 1416 aa17.37■□□□□ 0.37
CLK3-205ENST00000561673 CSRNP3Q8WYN3 585 aa17.36■□□□□ 0.37
CLK3-205ENST00000561673 ABCC2Q92887 1545 aa17.36■□□□□ 0.37
CLK3-205ENST00000561673 UHRF1BP1LA0JNW5 1464 aa17.35■□□□□ 0.37
CLK3-205ENST00000561673 DIP2BQ9P265 1576 aa17.34■□□□□ 0.37
CLK3-205ENST00000561673 KIAA0556O60303 1618 aa17.33■□□□□ 0.37
CLK3-205ENST00000561673 ASXL2Q76L83 1435 aa17.3■□□□□ 0.36
CLK3-205ENST00000561673 CTTNBP2Q8WZ74 1663 aa17.29■□□□□ 0.36
CLK3-205ENST00000561673 GOLGA3Q08378 1498 aa17.29■□□□□ 0.36
CLK3-205ENST00000561673 PLB1Q6P1J6 1458 aa17.28■□□□□ 0.36
CLK3-205ENST00000561673 KDM5BQ9UGL1 1544 aa17.26■□□□□ 0.35
CLK3-205ENST00000561673 FAM9AQ8IZU1 332 aaPredicted RBP17.26■□□□□ 0.35
CLK3-205ENST00000561673 EEA1Q15075 1411 aa17.26■□□□□ 0.35
CLK3-205ENST00000561673 P3H3Q8IVL6 736 aa17.23■□□□□ 0.35
CLK3-205ENST00000561673 ZCCHC11Q5TAX3 1644 aaKnown RBP17.2■□□□□ 0.34
CLK3-205ENST00000561673 GLI2P10070 1586 aa17.19■□□□□ 0.34
CLK3-205ENST00000561673 EPRSP07814 1512 aaKnown RBP17.19■□□□□ 0.34
CLK3-205ENST00000561673 TSPOAP1O95153 1857 aa17.18■□□□□ 0.34
CLK3-205ENST00000561673 ABCA8O94911 1581 aa17.18■□□□□ 0.34
CLK3-205ENST00000561673 RANGAP1P46060 587 aaPredicted RBP17.15■□□□□ 0.34
CLK3-205ENST00000561673 WDR7Q9Y4E6 1490 aa17.14■□□□□ 0.33
CLK3-205ENST00000561673 KDM6BO15054 1643 aa17.14■□□□□ 0.33
CLK3-205ENST00000561673 KCNH8Q96L42 1107 aa17.13■□□□□ 0.33
CLK3-205ENST00000561673 ARID3CA6NKF2 412 aa17.12■□□□□ 0.33
CLK3-205ENST00000561673 PPRC1Q5VV67 1664 aaKnown RBP17.11■□□□□ 0.33
CLK3-205ENST00000561673 SAMD9Q5K651 1589 aa17.11■□□□□ 0.33
CLK3-205ENST00000561673 MAP3K4Q9Y6R4 1608 aa17.09■□□□□ 0.33
CLK3-205ENST00000561673 ATP10BO94823 1461 aa17.08■□□□□ 0.32
CLK3-205ENST00000561673 EHMT2Q96KQ7 1210 aa17.08■□□□□ 0.32
CLK3-205ENST00000561673 KIF21BO75037 1637 aa17.07■□□□□ 0.32
CLK3-205ENST00000561673 TEX14Q8IWB6 1497 aa17.05■□□□□ 0.32
CLK3-205ENST00000561673 COL17A1Q9UMD9 1497 aaPredicted RBP17.05■□□□□ 0.32
CLK3-205ENST00000561673 FHOD3Q2V2M9 1422 aa17.05■□□□□ 0.32
CLK3-205ENST00000561673 CD109Q6YHK3 1445 aa17.05■□□□□ 0.32
CLK3-205ENST00000561673 UBTFP17480 764 aaKnown RBP17.04■□□□□ 0.32
CLK3-205ENST00000561673 RAPGEF6Q8TEU7 1601 aa17.01■□□□□ 0.31
CLK3-205ENST00000561673 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP17.01■□□□□ 0.31
CLK3-205ENST00000561673 HNRNPUL2Q1KMD3 747 aaKnown RBP17.01■□□□□ 0.31
CLK3-205ENST00000561673 KDM4FA0A1W2PPD8 638 aa17■□□□□ 0.31
CLK3-205ENST00000561673 SENP3Q9H4L4 574 aaPredicted RBP17■□□□□ 0.31
CLK3-205ENST00000561673 MAGI3Q5TCQ9 1506 aa17■□□□□ 0.31
CLK3-205ENST00000561673 NUP153P49790 1475 aaKnown RBP16.99■□□□□ 0.31
CLK3-205ENST00000561673 EFCAB5A4FU69 1503 aa16.97■□□□□ 0.31
CLK3-205ENST00000561673 CFAP43Q8NDM7 1665 aa16.97■□□□□ 0.31
CLK3-205ENST00000561673 PLEKHD1A6NEE1 506 aa16.93■□□□□ 0.3
CLK3-205ENST00000561673 ABCA9Q8IUA7 1624 aa16.89■□□□□ 0.29
CLK3-205ENST00000561673 ARHGAP35Q9NRY4 1499 aa16.89■□□□□ 0.29
CLK3-205ENST00000561673 ATP1B4Q9UN42 357 aaPredicted RBP16.87■□□□□ 0.29
CLK3-205ENST00000561673 ARAP3Q8WWN8 1544 aa16.86■□□□□ 0.29
CLK3-205ENST00000561673 PHLDB1Q86UU1 1377 aa16.86■□□□□ 0.29
CLK3-205ENST00000561673 FMN1Q68DA7 1419 aa16.86■□□□□ 0.29
CLK3-205ENST00000561673 ADGRL1O94910 1474 aa16.83■□□□□ 0.28
CLK3-205ENST00000561673 RAPGEF3O95398 923 aa16.83■□□□□ 0.28
CLK3-205ENST00000561673 CDK13Q14004 1512 aaKnown RBP16.83■□□□□ 0.28
CLK3-205ENST00000561673 NEO1Q92859 1461 aa16.82■□□□□ 0.28
CLK3-205ENST00000561673 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP16.8■□□□□ 0.28
CLK3-205ENST00000561673 PLPPR3Q6T4P5 718 aa16.78■□□□□ 0.28
CLK3-205ENST00000561673 CDK11AQ9UQ88 783 aaPredicted RBP16.77■□□□□ 0.28
CLK3-205ENST00000561673 HECW1Q76N89 1606 aa16.76■□□□□ 0.27
CLK3-205ENST00000561673 AKNAQ7Z591 1439 aa16.75■□□□□ 0.27
CLK3-205ENST00000561673 FANCAO15360 1455 aa16.74■□□□□ 0.27
CLK3-205ENST00000561673 TTC37Q6PGP7 1564 aa16.74■□□□□ 0.27
CLK3-205ENST00000561673 DENND4BO75064 1496 aaPredicted RBP16.72■□□□□ 0.27
CLK3-205ENST00000561673 PLCH2O75038 1416 aa16.71■□□□□ 0.27
CLK3-205ENST00000561673 FRMPD1Q5SYB0 1578 aa16.71■□□□□ 0.27
CLK3-205ENST00000561673 CASKIN1Q8WXD9 1431 aa16.7■□□□□ 0.26
CLK3-205ENST00000561673 TROQ12816 1431 aaPredicted RBP16.7■□□□□ 0.26
CLK3-205ENST00000561673 CLIP1P30622 1438 aa16.69■□□□□ 0.26
CLK3-205ENST00000561673 EFCAB2Q5VUJ9 269 aa16.67■□□□□ 0.26
CLK3-205ENST00000561673 CFAP74Q9C0B2 1584 aa16.67■□□□□ 0.26
CLK3-205ENST00000561673 LRRIQ1Q96JM4 1722 aa16.65■□□□□ 0.26
CLK3-205ENST00000561673 PCF11O94913 1555 aaKnown RBP16.65■□□□□ 0.26
CLK3-205ENST00000561673 SCAPERQ9BY12 1400 aa16.65■□□□□ 0.26
CLK3-205ENST00000561673 KIF14Q15058 1648 aa16.65■□□□□ 0.26
CLK3-205ENST00000561673 ARID4BQ4LE39 1312 aaPredicted RBP16.65■□□□□ 0.26
CLK3-205ENST00000561673 CCDC18Q5T9S5 1454 aa16.64■□□□□ 0.25
CLK3-205ENST00000561673 RICTORQ6R327 1708 aa16.64■□□□□ 0.25
CLK3-205ENST00000561673 FYCO1Q9BQS8 1478 aa16.61■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 129.7 ms