RNA–Protein interactions for RNA: ENST00000561026.5

SNX1-213, Transcript of sorting nexin 1, humanhuman

TSL 1 (best) BASIC

Gene SNX1, Length 1,374 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-213ENST00000561026 RUSC2Q8N2Y8 1516 aa28.16■■■□□ 2.1
SNX1-213ENST00000561026 CUL7Q14999 1698 aa28.11■■■□□ 2.09
SNX1-213ENST00000561026 KIAA0586Q9BVV6 1533 aa28.1■■■□□ 2.09
SNX1-213ENST00000561026 CARMIL1Q5VZK9 1371 aa28.07■■■□□ 2.08
SNX1-213ENST00000561026 NPM1P06748 294 aaKnown RBP eCLIP27.91■■■□□ 2.06
SNX1-213ENST00000561026 ADCY10Q96PN6 1610 aa27.84■■■□□ 2.05
SNX1-213ENST00000561026 PTPRGP23470 1445 aa27.83■■■□□ 2.05
SNX1-213ENST00000561026 CARMIL2Q6F5E8 1435 aa27.81■■■□□ 2.04
SNX1-213ENST00000561026 MAPKBP1O60336 1514 aa27.81■■■□□ 2.04
SNX1-213ENST00000561026 KIF13AQ9H1H9 1805 aa27.8■■■□□ 2.04
SNX1-213ENST00000561026 RAPGEF2Q9Y4G8 1499 aa27.8■■■□□ 2.04
SNX1-213ENST00000561026 IQGAP2Q13576 1575 aa27.8■■■□□ 2.04
SNX1-213ENST00000561026 FAM69CQ0P6D2 419 aa27.79■■■□□ 2.04
SNX1-213ENST00000561026 ABCC10Q5T3U5 1492 aa27.79■■■□□ 2.04
SNX1-213ENST00000561026 TNIKQ9UKE5 1360 aa27.78■■■□□ 2.04
SNX1-213ENST00000561026 TTBK1Q5TCY1 1321 aaPredicted RBP27.76■■■□□ 2.03
SNX1-213ENST00000561026 DISP1Q96F81 1524 aa27.68■■■□□ 2.02
SNX1-213ENST00000561026 DIP2BQ9P265 1576 aa27.68■■■□□ 2.02
SNX1-213ENST00000561026 UGGT2Q9NYU1 1516 aa27.65■■■□□ 2.02
SNX1-213ENST00000561026 ABCC2Q92887 1545 aa27.64■■■□□ 2.01
SNX1-213ENST00000561026 UACAQ9BZF9 1416 aa27.61■■■□□ 2.01
SNX1-213ENST00000561026 UHRF1BP1LA0JNW5 1464 aa27.61■■■□□ 2.01
SNX1-213ENST00000561026 AEBP2Q6ZN18 517 aaPredicted RBP27.57■■■□□ 2
SNX1-213ENST00000561026 PRXQ9BXM0 1461 aa27.56■■■□□ 2
SNX1-213ENST00000561026 KIAA0556O60303 1618 aa27.54■■■□□ 2
SNX1-213ENST00000561026 ASXL2Q76L83 1435 aa27.54■■■□□ 2
SNX1-213ENST00000561026 PLB1Q6P1J6 1458 aa27.52■■■□□ 2
SNX1-213ENST00000561026 CTTNBP2Q8WZ74 1663 aa27.48■■□□□ 1.99
SNX1-213ENST00000561026 KDM5BQ9UGL1 1544 aa27.48■■□□□ 1.99
SNX1-213ENST00000561026 GOLGA3Q08378 1498 aa27.44■■□□□ 1.98
SNX1-213ENST00000561026 TSPOAP1O95153 1857 aa27.44■■□□□ 1.98
SNX1-213ENST00000561026 GLI2P10070 1586 aa27.42■■□□□ 1.98
SNX1-213ENST00000561026 CSRNP3Q8WYN3 585 aa27.41■■□□□ 1.98
SNX1-213ENST00000561026 KDM6BO15054 1643 aa27.4■■□□□ 1.98
SNX1-213ENST00000561026 ZCCHC11Q5TAX3 1644 aaKnown RBP27.37■■□□□ 1.97
SNX1-213ENST00000561026 EPRSP07814 1512 aaKnown RBP27.36■■□□□ 1.97
SNX1-213ENST00000561026 ABCA8O94911 1581 aa27.3■■□□□ 1.96
SNX1-213ENST00000561026 PPRC1Q5VV67 1664 aaKnown RBP27.29■■□□□ 1.96
SNX1-213ENST00000561026 EEA1Q15075 1411 aa27.28■■□□□ 1.96
SNX1-213ENST00000561026 WDR7Q9Y4E6 1490 aa27.27■■□□□ 1.96
SNX1-213ENST00000561026 P3H3Q8IVL6 736 aa27.25■■□□□ 1.95
SNX1-213ENST00000561026 MAP3K4Q9Y6R4 1608 aa27.25■■□□□ 1.95
SNX1-213ENST00000561026 FAM9AQ8IZU1 332 aaPredicted RBP27.24■■□□□ 1.95
SNX1-213ENST00000561026 TEX14Q8IWB6 1497 aa27.2■■□□□ 1.94
SNX1-213ENST00000561026 KCNH8Q96L42 1107 aa27.18■■□□□ 1.94
SNX1-213ENST00000561026 COL17A1Q9UMD9 1497 aaPredicted RBP27.17■■□□□ 1.94
SNX1-213ENST00000561026 KDM4FA0A1W2PPD8 638 aa27.15■■□□□ 1.94
SNX1-213ENST00000561026 SAMD9Q5K651 1589 aa27.14■■□□□ 1.94
SNX1-213ENST00000561026 CD109Q6YHK3 1445 aa27.12■■□□□ 1.93
SNX1-213ENST00000561026 ARID3CA6NKF2 412 aa27.11■■□□□ 1.93
SNX1-213ENST00000561026 ATP10BO94823 1461 aa27.11■■□□□ 1.93
SNX1-213ENST00000561026 MAGI3Q5TCQ9 1506 aa27.08■■□□□ 1.93
SNX1-213ENST00000561026 RANGAP1P46060 587 aaPredicted RBP27.08■■□□□ 1.93
SNX1-213ENST00000561026 CFAP43Q8NDM7 1665 aa27.05■■□□□ 1.92
SNX1-213ENST00000561026 KIF21BO75037 1637 aa27.01■■□□□ 1.92
SNX1-213ENST00000561026 CHIC1Q5VXU3 224 aa27.01■■□□□ 1.91
SNX1-213ENST00000561026 RAPGEF6Q8TEU7 1601 aa27.01■■□□□ 1.91
SNX1-213ENST00000561026 FHOD3Q2V2M9 1422 aa26.99■■□□□ 1.91
SNX1-213ENST00000561026 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP26.97■■□□□ 1.91
SNX1-213ENST00000561026 HNRNPUL2Q1KMD3 747 aaKnown RBP26.97■■□□□ 1.91
SNX1-213ENST00000561026 NUP153P49790 1475 aaKnown RBP26.95■■□□□ 1.9
SNX1-213ENST00000561026 ADGRL1O94910 1474 aa26.92■■□□□ 1.9
SNX1-213ENST00000561026 EFCAB5A4FU69 1503 aa26.91■■□□□ 1.9
SNX1-213ENST00000561026 ABCA9Q8IUA7 1624 aa26.9■■□□□ 1.9
SNX1-213ENST00000561026 UBTFP17480 764 aaKnown RBP26.88■■□□□ 1.89
SNX1-213ENST00000561026 EHMT2Q96KQ7 1210 aa26.87■■□□□ 1.89
SNX1-213ENST00000561026 ARAP3Q8WWN8 1544 aa26.87■■□□□ 1.89
SNX1-213ENST00000561026 PHLDB1Q86UU1 1377 aa26.85■■□□□ 1.89
SNX1-213ENST00000561026 PLEKHD1A6NEE1 506 aa26.84■■□□□ 1.89
SNX1-213ENST00000561026 NEO1Q92859 1461 aa26.77■■□□□ 1.88
SNX1-213ENST00000561026 RAPGEF3O95398 923 aa26.74■■□□□ 1.87
SNX1-213ENST00000561026 ARHGAP35Q9NRY4 1499 aa26.71■■□□□ 1.87
SNX1-213ENST00000561026 FMN1Q68DA7 1419 aa26.71■■□□□ 1.87
SNX1-213ENST00000561026 CDK13Q14004 1512 aaKnown RBP26.68■■□□□ 1.86
SNX1-213ENST00000561026 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP26.67■■□□□ 1.86
SNX1-213ENST00000561026 ATP1B4Q9UN42 357 aaPredicted RBP26.66■■□□□ 1.86
SNX1-213ENST00000561026 FANCAO15360 1455 aa26.62■■□□□ 1.85
SNX1-213ENST00000561026 AKNAQ7Z591 1439 aa26.62■■□□□ 1.85
SNX1-213ENST00000561026 FRMPD1Q5SYB0 1578 aa26.6■■□□□ 1.85
SNX1-213ENST00000561026 TTC37Q6PGP7 1564 aa26.6■■□□□ 1.85
SNX1-213ENST00000561026 HECW1Q76N89 1606 aa26.59■■□□□ 1.85
SNX1-213ENST00000561026 DENND4BO75064 1496 aaPredicted RBP26.59■■□□□ 1.85
SNX1-213ENST00000561026 CDK11AQ9UQ88 783 aaPredicted RBP26.58■■□□□ 1.84
SNX1-213ENST00000561026 CFAP74Q9C0B2 1584 aa26.55■■□□□ 1.84
SNX1-213ENST00000561026 PLCH2O75038 1416 aa26.54■■□□□ 1.84
SNX1-213ENST00000561026 RICTORQ6R327 1708 aa26.5■■□□□ 1.83
SNX1-213ENST00000561026 ARID4BQ4LE39 1312 aaPredicted RBP26.49■■□□□ 1.83
SNX1-213ENST00000561026 HECW2Q9P2P5 1572 aa26.48■■□□□ 1.83
SNX1-213ENST00000561026 TROQ12816 1431 aaPredicted RBP26.47■■□□□ 1.83
SNX1-213ENST00000561026 ADAMTSL3P82987 1691 aa26.46■■□□□ 1.83
SNX1-213ENST00000561026 EFCAB2Q5VUJ9 269 aa26.46■■□□□ 1.83
SNX1-213ENST00000561026 ARHGEF40Q8TER5 1519 aa26.45■■□□□ 1.83
SNX1-213ENST00000561026 SCAPERQ9BY12 1400 aa26.45■■□□□ 1.82
SNX1-213ENST00000561026 ZMYM4Q5VZL5 1548 aa26.44■■□□□ 1.82
SNX1-213ENST00000561026 CASKIN1Q8WXD9 1431 aa26.43■■□□□ 1.82
SNX1-213ENST00000561026 PTPRMP28827 1452 aa26.43■■□□□ 1.82
SNX1-213ENST00000561026 CLIP1P30622 1438 aa26.42■■□□□ 1.82
SNX1-213ENST00000561026 KIF14Q15058 1648 aa26.42■■□□□ 1.82
SNX1-213ENST00000561026 MAGI2Q86UL8 1455 aa26.41■■□□□ 1.82
SNX1-213ENST00000561026 BCORL1Q5H9F3 1711 aa26.41■■□□□ 1.82
Retrieved 100 of 20,778 RNA–protein pairs in 8.2 ms