RNA–Protein interactions for RNA: ENST00000560975.5

TPM1-228, Transcript of tropomyosin 1, humanhuman

TSL 5

Gene TPM1, Length 2,855 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1-228ENST00000560975 TOP2BQ02880 1626 aa23.14■■□□□ 1.3
TPM1-228ENST00000560975 SETD5Q9C0A6 1442 aa23.14■■□□□ 1.29
TPM1-228ENST00000560975 FAM50AQ14320 339 aaKnown RBP23.13■■□□□ 1.29
TPM1-228ENST00000560975 CDK11AQ9UQ88 783 aaPredicted RBP23.11■■□□□ 1.29
TPM1-228ENST00000560975 PEG3Q9GZU2 1588 aa23.1■■□□□ 1.29
TPM1-228ENST00000560975 ARHGAP35Q9NRY4 1499 aa23.08■■□□□ 1.29
TPM1-228ENST00000560975 FANCIQ9NVI1 1328 aa23.08■■□□□ 1.29
TPM1-228ENST00000560975 HNRNPUQ00839 825 aaKnown RBP eCLIP23.05■■□□□ 1.28
TPM1-228ENST00000560975 ATAD2BQ9ULI0 1458 aa23.05■■□□□ 1.28
TPM1-228ENST00000560975 PHLDB1Q86UU1 1377 aa22.98■■□□□ 1.27
TPM1-228ENST00000560975 BICRAQ9NZM4 1560 aa22.97■■□□□ 1.27
TPM1-228ENST00000560975 BIVM-ERCC5R4GMW8 1640 aa22.97■■□□□ 1.27
TPM1-228ENST00000560975 KIF27Q86VH2 1401 aa22.96■■□□□ 1.27
TPM1-228ENST00000560975 ATP1B4Q9UN42 357 aaPredicted RBP22.95■■□□□ 1.26
TPM1-228ENST00000560975 TIMELESSQ9UNS1 1208 aa22.94■■□□□ 1.26
TPM1-228ENST00000560975 TIAM1Q13009 1591 aa22.91■■□□□ 1.26
TPM1-228ENST00000560975 DEKP35659 375 aaKnown RBP22.91■■□□□ 1.26
TPM1-228ENST00000560975 TONSLQ96HA7 1378 aa22.88■■□□□ 1.25
TPM1-228ENST00000560975 LRRC9Q6ZRR7 1453 aa22.87■■□□□ 1.25
TPM1-228ENST00000560975 CUX1P39880 1505 aa22.86■■□□□ 1.25
TPM1-228ENST00000560975 P3H3Q8IVL6 736 aa22.86■■□□□ 1.25
TPM1-228ENST00000560975 B4GALNT3Q6L9W6 998 aa22.83■■□□□ 1.24
TPM1-228ENST00000560975 PPP4R2Q9NY27 417 aa22.83■■□□□ 1.24
TPM1-228ENST00000560975 NBR1Q14596 966 aa22.8■■□□□ 1.24
TPM1-228ENST00000560975 MYT1LQ9UL68 1186 aa22.77■■□□□ 1.24
TPM1-228ENST00000560975 MAP3K1Q13233 1512 aa22.75■■□□□ 1.23
TPM1-228ENST00000560975 CCDC184Q52MB2 194 aa22.75■■□□□ 1.23
TPM1-228ENST00000560975 FAM9BQ8IZU0 186 aa22.71■■□□□ 1.23
TPM1-228ENST00000560975 ERICH6BQ5W0A0 696 aa22.7■■□□□ 1.22
TPM1-228ENST00000560975 NOP58Q9Y2X3 529 aaKnown RBP22.7■■□□□ 1.22
TPM1-228ENST00000560975 PAK3O75914 559 aaPredicted RBP22.7■■□□□ 1.22
TPM1-228ENST00000560975 PRKCSHP14314 528 aaPredicted RBP22.7■■□□□ 1.22
TPM1-228ENST00000560975 IGF1RP08069 1367 aa22.69■■□□□ 1.22
TPM1-228ENST00000560975 WASHC2AQ641Q2 1341 aa22.68■■□□□ 1.22
TPM1-228ENST00000560975 HSPA5P11021 654 aaKnown RBP22.66■■□□□ 1.22
TPM1-228ENST00000560975 CARMIL1Q5VZK9 1371 aa22.63■■□□□ 1.21
TPM1-228ENST00000560975 FHAD1B1AJZ9 1412 aa22.63■■□□□ 1.21
TPM1-228ENST00000560975 CCDC18Q5T9S5 1454 aa22.63■■□□□ 1.21
TPM1-228ENST00000560975 PCF11O94913 1555 aaKnown RBP22.62■■□□□ 1.21
TPM1-228ENST00000560975 MRS2Q9HD23 443 aa22.59■■□□□ 1.21
TPM1-228ENST00000560975 FHOD3Q2V2M9 1422 aa22.57■■□□□ 1.2
TPM1-228ENST00000560975 CFAP43Q8NDM7 1665 aa22.57■■□□□ 1.2
TPM1-228ENST00000560975 UACAQ9BZF9 1416 aa22.56■■□□□ 1.2
TPM1-228ENST00000560975 PTPRKQ15262 1439 aa22.54■■□□□ 1.2
TPM1-228ENST00000560975 ANO8Q9HCE9 1232 aaPredicted RBP22.53■■□□□ 1.2
TPM1-228ENST00000560975 EIF4G2P78344 907 aaKnown RBP eCLIP22.52■■□□□ 1.2
TPM1-228ENST00000560975 PRKRIP1Q9H875 184 aaPredicted RBP22.52■■□□□ 1.2
TPM1-228ENST00000560975 FGD6Q6ZV73 1430 aa22.52■■□□□ 1.2
TPM1-228ENST00000560975 AQRO60306 1485 aaKnown RBP eCLIP22.51■■□□□ 1.192e-12■■■■□ 23
TPM1-228ENST00000560975 ZBED9Q6R2W3 1325 aa22.51■■□□□ 1.19
TPM1-228ENST00000560975 CNGB1Q14028 1251 aaPredicted RBP22.51■■□□□ 1.19
TPM1-228ENST00000560975 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP22.5■■□□□ 1.191e-7■■□□□ 13.6
TPM1-228ENST00000560975 C11orf95C9JLR9 678 aaPredicted RBP22.5■■□□□ 1.19
TPM1-228ENST00000560975 KDM5BQ9UGL1 1544 aa22.5■■□□□ 1.19
TPM1-228ENST00000560975 CNTLNQ9NXG0 1405 aa22.49■■□□□ 1.19
TPM1-228ENST00000560975 RTL5Q5HYW3 569 aaPredicted RBP22.48■■□□□ 1.19
TPM1-228ENST00000560975 HFM1A2PYH4 1435 aa22.48■■□□□ 1.19
TPM1-228ENST00000560975 ANP32AP39687 249 aaKnown RBP22.48■■□□□ 1.19
TPM1-228ENST00000560975 SENP3-EIF4A1A0A087X0R7 540 aa22.47■■□□□ 1.19
TPM1-228ENST00000560975 PTPN23Q9H3S7 1636 aa22.46■■□□□ 1.19
TPM1-228ENST00000560975 CFTRP13569 1480 aa22.46■■□□□ 1.19
TPM1-228ENST00000560975 CCDC136Q96JN2 1154 aa22.44■■□□□ 1.18
TPM1-228ENST00000560975 IPO9Q96P70 1041 aaKnown RBP22.44■■□□□ 1.18
TPM1-228ENST00000560975 RRP7BPQ9NSQ0 103 aa22.44■■□□□ 1.18
TPM1-228ENST00000560975 NAIPQ13075 1403 aa22.44■■□□□ 1.18
TPM1-228ENST00000560975 ZBTB47Q9UFB7 747 aaPredicted RBP22.43■■□□□ 1.18
TPM1-228ENST00000560975 MTUS2Q5JR59 1369 aa22.43■■□□□ 1.18
TPM1-228ENST00000560975 AKNAQ7Z591 1439 aa22.43■■□□□ 1.18
TPM1-228ENST00000560975 CHIC2Q9UKJ5 165 aa22.43■■□□□ 1.18
TPM1-228ENST00000560975 FYCO1Q9BQS8 1478 aa22.42■■□□□ 1.18
TPM1-228ENST00000560975 NCOA2Q15596 1464 aa22.41■■□□□ 1.18
TPM1-228ENST00000560975 CASKIN1Q8WXD9 1431 aa22.4■■□□□ 1.18
TPM1-228ENST00000560975 CCDC7Q96M83 1385 aa22.39■■□□□ 1.18
TPM1-228ENST00000560975 SALL2Q9Y467 1007 aaPredicted RBP22.39■■□□□ 1.17
TPM1-228ENST00000560975 FGD5Q6ZNL6 1462 aa22.38■■□□□ 1.17
TPM1-228ENST00000560975 RTN4Q9NQC3 1192 aaKnown RBP22.38■■□□□ 1.17
TPM1-228ENST00000560975 IL27Q8NEV9 243 aa22.37■■□□□ 1.17
TPM1-228ENST00000560975 FMN1Q68DA7 1419 aa22.37■■□□□ 1.17
TPM1-228ENST00000560975 L3MBTL2Q969R5 705 aa22.36■■□□□ 1.17
TPM1-228ENST00000560975 FOXD1Q16676 465 aa22.36■■□□□ 1.17
TPM1-228ENST00000560975 NCAPD3P42695 1498 aa22.35■■□□□ 1.17
TPM1-228ENST00000560975 NPM2Q86SE8 214 aaKnown RBP22.34■■□□□ 1.17
TPM1-228ENST00000560975 HMGXB3Q12766 1538 aa22.32■■□□□ 1.16
TPM1-228ENST00000560975 NCOA1Q15788 1441 aa22.32■■□□□ 1.16
TPM1-228ENST00000560975 POLR3GLQ9BT43 218 aa22.3■■□□□ 1.16
TPM1-228ENST00000560975 NUDCQ9Y266 331 aa22.29■■□□□ 1.16
TPM1-228ENST00000560975 SMG6Q86US8 1419 aaKnown RBP22.28■■□□□ 1.16
TPM1-228ENST00000560975 KIF7Q2M1P5 1343 aa22.28■■□□□ 1.16
TPM1-228ENST00000560975 LAS1LQ9Y4W2 734 aaKnown RBP22.27■■□□□ 1.16
TPM1-228ENST00000560975 MYOM3Q5VTT5 1437 aa22.26■■□□□ 1.15
TPM1-228ENST00000560975 NBPF8Q3BBV2 869 aa22.26■■□□□ 1.15
TPM1-228ENST00000560975 MPHOSPH9Q99550 1183 aa22.25■■□□□ 1.15
TPM1-228ENST00000560975 DENND4BO75064 1496 aaPredicted RBP22.25■■□□□ 1.15
TPM1-228ENST00000560975 EFCAB5A4FU69 1503 aa22.23■■□□□ 1.15
TPM1-228ENST00000560975 SNAPC4Q5SXM2 1469 aa22.2■■□□□ 1.14
TPM1-228ENST00000560975 NEFMP07197 916 aa22.19■■□□□ 1.14
TPM1-228ENST00000560975 RNF123Q5XPI4 1314 aa22.19■■□□□ 1.14
TPM1-228ENST00000560975 ZBTB4Q9P1Z0 1013 aaPredicted RBP22.18■■□□□ 1.14
TPM1-228ENST00000560975 KDM6BO15054 1643 aa22.16■■□□□ 1.14
TPM1-228ENST00000560975 RAD54L2Q9Y4B4 1467 aa22.16■■□□□ 1.14
Retrieved 100 of 20,778 RNA–protein pairs in 56.5 ms