RNA–Protein interactions for RNA: ENST00000560620.1

CTDSPL2-209, Transcript of CTD small phosphatase like 2, humanhuman

TSL 3

Gene CTDSPL2, Length 863 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTDSPL2-209ENST00000560620 ERCC6L2Q5T890 1561 aa21.9■■□□□ 1.1
CTDSPL2-209ENST00000560620 PRG4Q92954 1404 aaPredicted RBP21.88■■□□□ 1.09
CTDSPL2-209ENST00000560620 KIAA0586Q9BVV6 1533 aa21.85■■□□□ 1.09
CTDSPL2-209ENST00000560620 RAPGEF2Q9Y4G8 1499 aa21.82■■□□□ 1.08
CTDSPL2-209ENST00000560620 TRHP20396 242 aaPredicted RBP21.8■■□□□ 1.08
CTDSPL2-209ENST00000560620 IQGAP2Q13576 1575 aa21.74■■□□□ 1.07
CTDSPL2-209ENST00000560620 TTBK1Q5TCY1 1321 aaPredicted RBP21.71■■□□□ 1.07
CTDSPL2-209ENST00000560620 FAM9AQ8IZU1 332 aaPredicted RBP21.69■■□□□ 1.06
CTDSPL2-209ENST00000560620 CSRNP3Q8WYN3 585 aa21.68■■□□□ 1.06
CTDSPL2-209ENST00000560620 CARMIL2Q6F5E8 1435 aa21.68■■□□□ 1.06
CTDSPL2-209ENST00000560620 CHIC1Q5VXU3 224 aa21.67■■□□□ 1.06
CTDSPL2-209ENST00000560620 PRXQ9BXM0 1461 aa21.65■■□□□ 1.06
CTDSPL2-209ENST00000560620 EEA1Q15075 1411 aa21.63■■□□□ 1.05
CTDSPL2-209ENST00000560620 CTTNBP2Q8WZ74 1663 aa21.63■■□□□ 1.05
CTDSPL2-209ENST00000560620 NPM1P06748 294 aaKnown RBP eCLIP21.61■■□□□ 1.05
CTDSPL2-209ENST00000560620 PTPRGP23470 1445 aa21.6■■□□□ 1.05
CTDSPL2-209ENST00000560620 TNIKQ9UKE5 1360 aa21.58■■□□□ 1.04
CTDSPL2-209ENST00000560620 UGGT2Q9NYU1 1516 aa21.56■■□□□ 1.04
CTDSPL2-209ENST00000560620 DISP1Q96F81 1524 aa21.55■■□□□ 1.04
CTDSPL2-209ENST00000560620 ADCY10Q96PN6 1610 aa21.53■■□□□ 1.04
CTDSPL2-209ENST00000560620 KIAA0556O60303 1618 aa21.51■■□□□ 1.03
CTDSPL2-209ENST00000560620 GOLGA3Q08378 1498 aa21.49■■□□□ 1.03
CTDSPL2-209ENST00000560620 EHMT2Q96KQ7 1210 aa21.48■■□□□ 1.03
CTDSPL2-209ENST00000560620 RANGAP1P46060 587 aaPredicted RBP21.46■■□□□ 1.03
CTDSPL2-209ENST00000560620 UACAQ9BZF9 1416 aa21.43■■□□□ 1.02
CTDSPL2-209ENST00000560620 P3H3Q8IVL6 736 aa21.42■■□□□ 1.02
CTDSPL2-209ENST00000560620 KIF21BO75037 1637 aa21.41■■□□□ 1.02
CTDSPL2-209ENST00000560620 MAPKBP1O60336 1514 aa21.39■■□□□ 1.02
CTDSPL2-209ENST00000560620 ABCC2Q92887 1545 aa21.39■■□□□ 1.01
CTDSPL2-209ENST00000560620 FAM69CQ0P6D2 419 aa21.38■■□□□ 1.01
CTDSPL2-209ENST00000560620 UBTFP17480 764 aaKnown RBP21.37■■□□□ 1.01
CTDSPL2-209ENST00000560620 UHRF1BP1LA0JNW5 1464 aa21.37■■□□□ 1.01
CTDSPL2-209ENST00000560620 KIF13AQ9H1H9 1805 aa21.36■■□□□ 1.01
CTDSPL2-209ENST00000560620 ABCC10Q5T3U5 1492 aa21.33■■□□□ 1.01
CTDSPL2-209ENST00000560620 PLB1Q6P1J6 1458 aa21.33■■□□□ 1.01
CTDSPL2-209ENST00000560620 DIP2BQ9P265 1576 aa21.3■■□□□ 1
CTDSPL2-209ENST00000560620 ASXL2Q76L83 1435 aa21.29■■□□□ 1
CTDSPL2-209ENST00000560620 SAMD9Q5K651 1589 aa21.29■■□□□ 1
CTDSPL2-209ENST00000560620 ZCCHC11Q5TAX3 1644 aaKnown RBP21.28■■□□□ 1
CTDSPL2-209ENST00000560620 KDM5BQ9UGL1 1544 aa21.28■■□□□ 1
CTDSPL2-209ENST00000560620 ABCA8O94911 1581 aa21.25■□□□□ 0.99
CTDSPL2-209ENST00000560620 ARID3CA6NKF2 412 aa21.24■□□□□ 0.99
CTDSPL2-209ENST00000560620 FHOD3Q2V2M9 1422 aa21.22■□□□□ 0.99
CTDSPL2-209ENST00000560620 TSPOAP1O95153 1857 aa21.22■□□□□ 0.99
CTDSPL2-209ENST00000560620 EFCAB5A4FU69 1503 aa21.19■□□□□ 0.98
CTDSPL2-209ENST00000560620 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP21.18■□□□□ 0.98
CTDSPL2-209ENST00000560620 HNRNPUL2Q1KMD3 747 aaKnown RBP21.18■□□□□ 0.98
CTDSPL2-209ENST00000560620 RAPGEF6Q8TEU7 1601 aa21.17■□□□□ 0.98
CTDSPL2-209ENST00000560620 WDR7Q9Y4E6 1490 aa21.15■□□□□ 0.98
CTDSPL2-209ENST00000560620 KCNH8Q96L42 1107 aa21.15■□□□□ 0.98
CTDSPL2-209ENST00000560620 EPRSP07814 1512 aaKnown RBP21.14■□□□□ 0.98
CTDSPL2-209ENST00000560620 GLI2P10070 1586 aa21.12■□□□□ 0.97
CTDSPL2-209ENST00000560620 ATP10BO94823 1461 aa21.1■□□□□ 0.97
CTDSPL2-209ENST00000560620 ATP1B4Q9UN42 357 aaPredicted RBP21.09■□□□□ 0.97
CTDSPL2-209ENST00000560620 ARHGAP35Q9NRY4 1499 aa21.07■□□□□ 0.96
CTDSPL2-209ENST00000560620 NUP153P49790 1475 aaKnown RBP21.06■□□□□ 0.96
CTDSPL2-209ENST00000560620 KDM6BO15054 1643 aa21.04■□□□□ 0.96
CTDSPL2-209ENST00000560620 MAP3K4Q9Y6R4 1608 aa21.04■□□□□ 0.96
CTDSPL2-209ENST00000560620 FMN1Q68DA7 1419 aa21.04■□□□□ 0.96
CTDSPL2-209ENST00000560620 PPRC1Q5VV67 1664 aaKnown RBP21.01■□□□□ 0.95
CTDSPL2-209ENST00000560620 TEX14Q8IWB6 1497 aa21.01■□□□□ 0.95
CTDSPL2-209ENST00000560620 CD109Q6YHK3 1445 aa21■□□□□ 0.95
CTDSPL2-209ENST00000560620 PLEKHD1A6NEE1 506 aa20.99■□□□□ 0.95
CTDSPL2-209ENST00000560620 CFAP43Q8NDM7 1665 aa20.99■□□□□ 0.95
CTDSPL2-209ENST00000560620 HECW1Q76N89 1606 aa20.96■□□□□ 0.95
CTDSPL2-209ENST00000560620 CLIP1P30622 1438 aa20.95■□□□□ 0.94
CTDSPL2-209ENST00000560620 CDK13Q14004 1512 aaKnown RBP20.94■□□□□ 0.94
CTDSPL2-209ENST00000560620 MAGI3Q5TCQ9 1506 aa20.9■□□□□ 0.94
CTDSPL2-209ENST00000560620 ABCA9Q8IUA7 1624 aa20.89■□□□□ 0.94
CTDSPL2-209ENST00000560620 CDK11AQ9UQ88 783 aaPredicted RBP20.89■□□□□ 0.93
CTDSPL2-209ENST00000560620 PCF11O94913 1555 aaKnown RBP20.85■□□□□ 0.93
CTDSPL2-209ENST00000560620 COL17A1Q9UMD9 1497 aaPredicted RBP20.84■□□□□ 0.93
CTDSPL2-209ENST00000560620 LOC105371045A0A1W2PR82 267 aa20.84■□□□□ 0.93
CTDSPL2-209ENST00000560620 CASKIN1Q8WXD9 1431 aa20.82■□□□□ 0.92
CTDSPL2-209ENST00000560620 AEBP2Q6ZN18 517 aaPredicted RBP20.82■□□□□ 0.92
CTDSPL2-209ENST00000560620 CEP162Q5TB80 1403 aa20.81■□□□□ 0.92
CTDSPL2-209ENST00000560620 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP20.79■□□□□ 0.92
CTDSPL2-209ENST00000560620 LRRIQ1Q96JM4 1722 aa20.79■□□□□ 0.92
CTDSPL2-209ENST00000560620 CCDC18Q5T9S5 1454 aa20.78■□□□□ 0.92
CTDSPL2-209ENST00000560620 FYCO1Q9BQS8 1478 aa20.78■□□□□ 0.92
CTDSPL2-209ENST00000560620 TTC37Q6PGP7 1564 aa20.77■□□□□ 0.92
CTDSPL2-209ENST00000560620 PHLDB1Q86UU1 1377 aa20.75■□□□□ 0.91
CTDSPL2-209ENST00000560620 NEO1Q92859 1461 aa20.75■□□□□ 0.91
CTDSPL2-209ENST00000560620 TROQ12816 1431 aaPredicted RBP20.74■□□□□ 0.91
CTDSPL2-209ENST00000560620 KIF14Q15058 1648 aa20.74■□□□□ 0.91
CTDSPL2-209ENST00000560620 ARAP3Q8WWN8 1544 aa20.73■□□□□ 0.91
CTDSPL2-209ENST00000560620 FANCAO15360 1455 aa20.72■□□□□ 0.91
CTDSPL2-209ENST00000560620 RAPGEF3O95398 923 aa20.7■□□□□ 0.9
CTDSPL2-209ENST00000560620 CFAP74Q9C0B2 1584 aa20.7■□□□□ 0.9
CTDSPL2-209ENST00000560620 MYO5CQ9NQX4 1742 aa20.68■□□□□ 0.9
CTDSPL2-209ENST00000560620 AKNAQ7Z591 1439 aa20.68■□□□□ 0.9
CTDSPL2-209ENST00000560620 PLCH2O75038 1416 aa20.67■□□□□ 0.9
CTDSPL2-209ENST00000560620 DENND4BO75064 1496 aaPredicted RBP20.64■□□□□ 0.89
CTDSPL2-209ENST00000560620 EFCAB2Q5VUJ9 269 aa20.64■□□□□ 0.89
CTDSPL2-209ENST00000560620 ARHGAP5Q13017 1502 aa20.63■□□□□ 0.89
CTDSPL2-209ENST00000560620 MTUS2Q5JR59 1369 aa20.61■□□□□ 0.89
CTDSPL2-209ENST00000560620 ADGRL1O94910 1474 aa20.61■□□□□ 0.89
CTDSPL2-209ENST00000560620 KDM4FA0A1W2PPD8 638 aa20.6■□□□□ 0.89
CTDSPL2-209ENST00000560620 SCAPERQ9BY12 1400 aa20.59■□□□□ 0.89
CTDSPL2-209ENST00000560620 FRMPD1Q5SYB0 1578 aa20.58■□□□□ 0.88
Retrieved 100 of 20,778 RNA–protein pairs in 9.7 ms