RNA–Protein interactions for RNA: ENST00000560519.1

HERC1-209, Transcript of HECT and RLD domain containing E3 ubiquitin protein ligase family member 1, humanhuman

TSL 3

Gene HERC1, Length 591 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HERC1-209ENST00000560519 PRG4Q92954 1404 aaPredicted RBP17.16■□□□□ 0.34
HERC1-209ENST00000560519 MAPKBP1O60336 1514 aa17.15■□□□□ 0.34
HERC1-209ENST00000560519 DIP2BQ9P265 1576 aa17.1■□□□□ 0.33
HERC1-209ENST00000560519 ADCY10Q96PN6 1610 aa17.1■□□□□ 0.33
HERC1-209ENST00000560519 JPH4Q96JJ6 628 aa17.07■□□□□ 0.32
HERC1-209ENST00000560519 ABCC10Q5T3U5 1492 aa17.06■□□□□ 0.32
HERC1-209ENST00000560519 KIAA0586Q9BVV6 1533 aa17.06■□□□□ 0.32
HERC1-209ENST00000560519 KIF27Q86VH2 1401 aa17.04■□□□□ 0.32
HERC1-209ENST00000560519 NPM1P06748 294 aaKnown RBP eCLIP17.02■□□□□ 0.32
HERC1-209ENST00000560519 KDM6BO15054 1643 aa17.02■□□□□ 0.31
HERC1-209ENST00000560519 TSPOAP1O95153 1857 aa16.97■□□□□ 0.31
HERC1-209ENST00000560519 IQGAP2Q13576 1575 aa16.96■□□□□ 0.31
HERC1-209ENST00000560519 FAM69CQ0P6D2 419 aa16.94■□□□□ 0.3
HERC1-209ENST00000560519 IGF1RP08069 1367 aa16.92■□□□□ 0.3
HERC1-209ENST00000560519 CARMIL2Q6F5E8 1435 aa16.92■□□□□ 0.3
HERC1-209ENST00000560519 ABCC2Q92887 1545 aa16.88■□□□□ 0.29
HERC1-209ENST00000560519 PTPRGP23470 1445 aa16.87■□□□□ 0.29
HERC1-209ENST00000560519 GLI2P10070 1586 aa16.86■□□□□ 0.29
HERC1-209ENST00000560519 CARMIL1Q5VZK9 1371 aa16.86■□□□□ 0.29
HERC1-209ENST00000560519 TNIKQ9UKE5 1360 aa16.86■□□□□ 0.29
HERC1-209ENST00000560519 PPRC1Q5VV67 1664 aaKnown RBP16.85■□□□□ 0.29
HERC1-209ENST00000560519 UHRF1BP1LA0JNW5 1464 aa16.84■□□□□ 0.29
HERC1-209ENST00000560519 CTTNBP2Q8WZ74 1663 aa16.84■□□□□ 0.29
HERC1-209ENST00000560519 PLB1Q6P1J6 1458 aa16.83■□□□□ 0.28
HERC1-209ENST00000560519 KIAA0556O60303 1618 aa16.81■□□□□ 0.28
HERC1-209ENST00000560519 MAP3K4Q9Y6R4 1608 aa16.81■□□□□ 0.28
HERC1-209ENST00000560519 ZCCHC11Q5TAX3 1644 aaKnown RBP16.8■□□□□ 0.28
HERC1-209ENST00000560519 UGGT2Q9NYU1 1516 aa16.8■□□□□ 0.28
HERC1-209ENST00000560519 ASXL2Q76L83 1435 aa16.79■□□□□ 0.28
HERC1-209ENST00000560519 DISP1Q96F81 1524 aa16.78■□□□□ 0.28
HERC1-209ENST00000560519 RAPGEF2Q9Y4G8 1499 aa16.77■□□□□ 0.28
HERC1-209ENST00000560519 UACAQ9BZF9 1416 aa16.77■□□□□ 0.27
HERC1-209ENST00000560519 KDM5BQ9UGL1 1544 aa16.75■□□□□ 0.27
HERC1-209ENST00000560519 TEX14Q8IWB6 1497 aa16.75■□□□□ 0.27
HERC1-209ENST00000560519 TTBK1Q5TCY1 1321 aaPredicted RBP16.71■□□□□ 0.27
HERC1-209ENST00000560519 EPRSP07814 1512 aaKnown RBP16.7■□□□□ 0.26
HERC1-209ENST00000560519 CFAP43Q8NDM7 1665 aa16.69■□□□□ 0.26
HERC1-209ENST00000560519 GOLGA3Q08378 1498 aa16.67■□□□□ 0.26
HERC1-209ENST00000560519 ADGRL1O94910 1474 aa16.66■□□□□ 0.26
HERC1-209ENST00000560519 WDR7Q9Y4E6 1490 aa16.66■□□□□ 0.26
HERC1-209ENST00000560519 KDM4FA0A1W2PPD8 638 aa16.65■□□□□ 0.26
HERC1-209ENST00000560519 ABCA8O94911 1581 aa16.61■□□□□ 0.25
HERC1-209ENST00000560519 MAGI3Q5TCQ9 1506 aa16.57■□□□□ 0.24
HERC1-209ENST00000560519 COL17A1Q9UMD9 1497 aaPredicted RBP16.55■□□□□ 0.24
HERC1-209ENST00000560519 PRXQ9BXM0 1461 aa16.53■□□□□ 0.24
HERC1-209ENST00000560519 HECW2Q9P2P5 1572 aa16.52■□□□□ 0.24
HERC1-209ENST00000560519 KIF21BO75037 1637 aa16.51■□□□□ 0.23
HERC1-209ENST00000560519 CD109Q6YHK3 1445 aa16.51■□□□□ 0.23
HERC1-209ENST00000560519 ABCA9Q8IUA7 1624 aa16.48■□□□□ 0.23
HERC1-209ENST00000560519 SAMD9Q5K651 1589 aa16.48■□□□□ 0.23
HERC1-209ENST00000560519 FAM9AQ8IZU1 332 aaPredicted RBP16.48■□□□□ 0.23
HERC1-209ENST00000560519 RAPGEF6Q8TEU7 1601 aa16.46■□□□□ 0.23
HERC1-209ENST00000560519 ARAP3Q8WWN8 1544 aa16.44■□□□□ 0.22
HERC1-209ENST00000560519 CFAP74Q9C0B2 1584 aa16.39■□□□□ 0.21
HERC1-209ENST00000560519 PHLDB1Q86UU1 1377 aa16.38■□□□□ 0.21
HERC1-209ENST00000560519 ATP10BO94823 1461 aa16.37■□□□□ 0.21
HERC1-209ENST00000560519 KCNH8Q96L42 1107 aa16.37■□□□□ 0.21
HERC1-209ENST00000560519 NEO1Q92859 1461 aa16.36■□□□□ 0.21
HERC1-209ENST00000560519 ADAMTSL3P82987 1691 aa16.35■□□□□ 0.21
HERC1-209ENST00000560519 EEA1Q15075 1411 aa16.35■□□□□ 0.21
HERC1-209ENST00000560519 FRMPD1Q5SYB0 1578 aa16.34■□□□□ 0.21
HERC1-209ENST00000560519 BCORL1Q5H9F3 1711 aa16.33■□□□□ 0.21
HERC1-209ENST00000560519 EFCAB5A4FU69 1503 aa16.32■□□□□ 0.2
HERC1-209ENST00000560519 ARHGEF40Q8TER5 1519 aa16.32■□□□□ 0.2
HERC1-209ENST00000560519 ILDR1Q86SU0 546 aaPredicted RBP16.31■□□□□ 0.2
HERC1-209ENST00000560519 RICTORQ6R327 1708 aa16.31■□□□□ 0.2
HERC1-209ENST00000560519 NUP153P49790 1475 aaKnown RBP16.29■□□□□ 0.2
HERC1-209ENST00000560519 MADDQ8WXG6 1647 aa16.27■□□□□ 0.2
HERC1-209ENST00000560519 P3H3Q8IVL6 736 aa16.26■□□□□ 0.19
HERC1-209ENST00000560519 PTPRMP28827 1452 aa16.26■□□□□ 0.19
HERC1-209ENST00000560519 ARID3CA6NKF2 412 aa16.25■□□□□ 0.19
HERC1-209ENST00000560519 CSRNP3Q8WYN3 585 aa16.25■□□□□ 0.19
HERC1-209ENST00000560519 ZMYM4Q5VZL5 1548 aa16.24■□□□□ 0.19
HERC1-209ENST00000560519 RIMS1Q86UR5 1692 aaKnown RBP16.24■□□□□ 0.19
HERC1-209ENST00000560519 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP16.23■□□□□ 0.19
HERC1-209ENST00000560519 HNRNPUL2Q1KMD3 747 aaKnown RBP16.23■□□□□ 0.19
HERC1-209ENST00000560519 PCF11O94913 1555 aaKnown RBP16.22■□□□□ 0.19
HERC1-209ENST00000560519 TTC37Q6PGP7 1564 aa16.22■□□□□ 0.19
HERC1-209ENST00000560519 FHOD3Q2V2M9 1422 aa16.22■□□□□ 0.19
HERC1-209ENST00000560519 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP16.21■□□□□ 0.19
HERC1-209ENST00000560519 FANCAO15360 1455 aa16.21■□□□□ 0.19
HERC1-209ENST00000560519 DENND4BO75064 1496 aaPredicted RBP16.21■□□□□ 0.19
HERC1-209ENST00000560519 MYO5CQ9NQX4 1742 aa16.19■□□□□ 0.18
HERC1-209ENST00000560519 HECW1Q76N89 1606 aa16.19■□□□□ 0.18
HERC1-209ENST00000560519 ZFYVE16Q7Z3T8 1539 aa16.19■□□□□ 0.18
HERC1-209ENST00000560519 FER1L4A9Z1Z3 1794 aa16.18■□□□□ 0.18
HERC1-209ENST00000560519 RAPGEF3O95398 923 aa16.17■□□□□ 0.18
HERC1-209ENST00000560519 POGZQ7Z3K3 1410 aa16.17■□□□□ 0.18
HERC1-209ENST00000560519 AKNAQ7Z591 1439 aa16.16■□□□□ 0.18
HERC1-209ENST00000560519 MAGI2Q86UL8 1455 aa16.16■□□□□ 0.18
HERC1-209ENST00000560519 PLEKHD1A6NEE1 506 aa16.14■□□□□ 0.17
HERC1-209ENST00000560519 LMTK3Q96Q04 1460 aa16.14■□□□□ 0.17
HERC1-209ENST00000560519 ARID4BQ4LE39 1312 aaPredicted RBP16.14■□□□□ 0.17
HERC1-209ENST00000560519 KIF14Q15058 1648 aa16.13■□□□□ 0.17
HERC1-209ENST00000560519 CDK13Q14004 1512 aaKnown RBP16.12■□□□□ 0.17
HERC1-209ENST00000560519 SIGLEC1Q9BZZ2 1709 aa16.11■□□□□ 0.17
HERC1-209ENST00000560519 FMN1Q68DA7 1419 aa16.1■□□□□ 0.17
HERC1-209ENST00000560519 RANGAP1P46060 587 aaPredicted RBP16.09■□□□□ 0.17
HERC1-209ENST00000560519 PREX1Q8TCU6 1659 aa16.08■□□□□ 0.17
HERC1-209ENST00000560519 FBXO41Q8TF61 875 aa16.08■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 13 ms