RNA–Protein interactions for RNA: ENST00000560467.1

LDLR-212, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 928 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-212ENST00000560467 FAM69CQ0P6D2 419 aa20.24■□□□□ 0.83
LDLR-212ENST00000560467 KIF13AQ9H1H9 1805 aa20.24■□□□□ 0.83
LDLR-212ENST00000560467 IGF1RP08069 1367 aa20.22■□□□□ 0.83
LDLR-212ENST00000560467 ABCC10Q5T3U5 1492 aa20.22■□□□□ 0.83
LDLR-212ENST00000560467 NPM1P06748 294 aaKnown RBP eCLIP20.2■□□□□ 0.82
LDLR-212ENST00000560467 KIAA0586Q9BVV6 1533 aa20.19■□□□□ 0.82
LDLR-212ENST00000560467 MAPKBP1O60336 1514 aa20.18■□□□□ 0.82
LDLR-212ENST00000560467 ADCY10Q96PN6 1610 aa20.18■□□□□ 0.82
LDLR-212ENST00000560467 KIF27Q86VH2 1401 aa20.18■□□□□ 0.82
LDLR-212ENST00000560467 DIP2BQ9P265 1576 aa20.15■□□□□ 0.82
LDLR-212ENST00000560467 CUL7Q14999 1698 aa20.1■□□□□ 0.81
LDLR-212ENST00000560467 TTBK1Q5TCY1 1321 aaPredicted RBP20.08■□□□□ 0.81
LDLR-212ENST00000560467 PTPRGP23470 1445 aa20.07■□□□□ 0.8
LDLR-212ENST00000560467 CARMIL1Q5VZK9 1371 aa20.07■□□□□ 0.8
LDLR-212ENST00000560467 TNIKQ9UKE5 1360 aa20.01■□□□□ 0.79
LDLR-212ENST00000560467 KDM6BO15054 1643 aa20.01■□□□□ 0.79
LDLR-212ENST00000560467 CARMIL2Q6F5E8 1435 aa19.99■□□□□ 0.79
LDLR-212ENST00000560467 ABCC2Q92887 1545 aa19.98■□□□□ 0.79
LDLR-212ENST00000560467 KDM4FA0A1W2PPD8 638 aa19.98■□□□□ 0.79
LDLR-212ENST00000560467 ASXL2Q76L83 1435 aa19.95■□□□□ 0.78
LDLR-212ENST00000560467 IQGAP2Q13576 1575 aa19.95■□□□□ 0.78
LDLR-212ENST00000560467 TSPOAP1O95153 1857 aa19.94■□□□□ 0.78
LDLR-212ENST00000560467 DISP1Q96F81 1524 aa19.92■□□□□ 0.78
LDLR-212ENST00000560467 PLB1Q6P1J6 1458 aa19.91■□□□□ 0.78
LDLR-212ENST00000560467 UACAQ9BZF9 1416 aa19.9■□□□□ 0.78
LDLR-212ENST00000560467 UHRF1BP1LA0JNW5 1464 aa19.9■□□□□ 0.78
LDLR-212ENST00000560467 GLI2P10070 1586 aa19.86■□□□□ 0.77
LDLR-212ENST00000560467 RAPGEF2Q9Y4G8 1499 aa19.85■□□□□ 0.77
LDLR-212ENST00000560467 UGGT2Q9NYU1 1516 aa19.83■□□□□ 0.77
LDLR-212ENST00000560467 PPRC1Q5VV67 1664 aaKnown RBP19.83■□□□□ 0.76
LDLR-212ENST00000560467 EPRSP07814 1512 aaKnown RBP19.82■□□□□ 0.76
LDLR-212ENST00000560467 KDM5BQ9UGL1 1544 aa19.82■□□□□ 0.76
LDLR-212ENST00000560467 COL17A1Q9UMD9 1497 aaPredicted RBP19.8■□□□□ 0.76
LDLR-212ENST00000560467 KIAA0556O60303 1618 aa19.79■□□□□ 0.76
LDLR-212ENST00000560467 ADGRL1O94910 1474 aa19.75■□□□□ 0.75
LDLR-212ENST00000560467 ZCCHC11Q5TAX3 1644 aaKnown RBP19.74■□□□□ 0.75
LDLR-212ENST00000560467 MAP3K4Q9Y6R4 1608 aa19.73■□□□□ 0.75
LDLR-212ENST00000560467 TEX14Q8IWB6 1497 aa19.72■□□□□ 0.75
LDLR-212ENST00000560467 WDR7Q9Y4E6 1490 aa19.72■□□□□ 0.75
LDLR-212ENST00000560467 GOLGA3Q08378 1498 aa19.64■□□□□ 0.73
LDLR-212ENST00000560467 ABCA8O94911 1581 aa19.62■□□□□ 0.73
LDLR-212ENST00000560467 KCNH8Q96L42 1107 aa19.62■□□□□ 0.73
LDLR-212ENST00000560467 PRXQ9BXM0 1461 aa19.61■□□□□ 0.73
LDLR-212ENST00000560467 CD109Q6YHK3 1445 aa19.61■□□□□ 0.73
LDLR-212ENST00000560467 CTTNBP2Q8WZ74 1663 aa19.59■□□□□ 0.73
LDLR-212ENST00000560467 ILDR1Q86SU0 546 aaPredicted RBP19.59■□□□□ 0.73
LDLR-212ENST00000560467 MAGI3Q5TCQ9 1506 aa19.58■□□□□ 0.73
LDLR-212ENST00000560467 CHIC1Q5VXU3 224 aa19.58■□□□□ 0.72
LDLR-212ENST00000560467 ARID3CA6NKF2 412 aa19.57■□□□□ 0.72
LDLR-212ENST00000560467 HECW2Q9P2P5 1572 aa19.53■□□□□ 0.72
LDLR-212ENST00000560467 P3H3Q8IVL6 736 aa19.52■□□□□ 0.72
LDLR-212ENST00000560467 CFAP43Q8NDM7 1665 aa19.52■□□□□ 0.71
LDLR-212ENST00000560467 ATP10BO94823 1461 aa19.48■□□□□ 0.71
LDLR-212ENST00000560467 ARAP3Q8WWN8 1544 aa19.43■□□□□ 0.7
LDLR-212ENST00000560467 KIF21BO75037 1637 aa19.41■□□□□ 0.7
LDLR-212ENST00000560467 FAM9AQ8IZU1 332 aaPredicted RBP19.4■□□□□ 0.7
LDLR-212ENST00000560467 CSRNP3Q8WYN3 585 aa19.39■□□□□ 0.69
LDLR-212ENST00000560467 SAMD9Q5K651 1589 aa19.38■□□□□ 0.69
LDLR-212ENST00000560467 ABCA9Q8IUA7 1624 aa19.37■□□□□ 0.69
LDLR-212ENST00000560467 RAPGEF3O95398 923 aa19.37■□□□□ 0.69
LDLR-212ENST00000560467 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP19.35■□□□□ 0.69
LDLR-212ENST00000560467 RANGAP1P46060 587 aaPredicted RBP19.35■□□□□ 0.69
LDLR-212ENST00000560467 HNRNPUL2Q1KMD3 747 aaKnown RBP19.35■□□□□ 0.69
LDLR-212ENST00000560467 PHLDB1Q86UU1 1377 aa19.34■□□□□ 0.69
LDLR-212ENST00000560467 RAPGEF6Q8TEU7 1601 aa19.34■□□□□ 0.69
LDLR-212ENST00000560467 NUP153P49790 1475 aaKnown RBP19.34■□□□□ 0.69
LDLR-212ENST00000560467 FHOD3Q2V2M9 1422 aa19.33■□□□□ 0.68
LDLR-212ENST00000560467 NEO1Q92859 1461 aa19.32■□□□□ 0.68
LDLR-212ENST00000560467 PTPRMP28827 1452 aa19.29■□□□□ 0.68
LDLR-212ENST00000560467 FRMPD1Q5SYB0 1578 aa19.28■□□□□ 0.68
LDLR-212ENST00000560467 ADAMTSL3P82987 1691 aa19.26■□□□□ 0.67
LDLR-212ENST00000560467 ARID4BQ4LE39 1312 aaPredicted RBP19.25■□□□□ 0.67
LDLR-212ENST00000560467 EEA1Q15075 1411 aa19.24■□□□□ 0.67
LDLR-212ENST00000560467 PLEKHD1A6NEE1 506 aa19.21■□□□□ 0.67
LDLR-212ENST00000560467 DENND4BO75064 1496 aaPredicted RBP19.2■□□□□ 0.66
LDLR-212ENST00000560467 ARHGEF40Q8TER5 1519 aa19.2■□□□□ 0.66
LDLR-212ENST00000560467 AKNAQ7Z591 1439 aa19.19■□□□□ 0.66
LDLR-212ENST00000560467 MADDQ8WXG6 1647 aa19.19■□□□□ 0.66
LDLR-212ENST00000560467 FANCAO15360 1455 aa19.18■□□□□ 0.66
LDLR-212ENST00000560467 BCORL1Q5H9F3 1711 aa19.18■□□□□ 0.66
LDLR-212ENST00000560467 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP19.16■□□□□ 0.66
LDLR-212ENST00000560467 LMTK3Q96Q04 1460 aa19.15■□□□□ 0.66
LDLR-212ENST00000560467 EFCAB5A4FU69 1503 aa19.15■□□□□ 0.66
LDLR-212ENST00000560467 PCF11O94913 1555 aaKnown RBP19.15■□□□□ 0.66
LDLR-212ENST00000560467 TTC37Q6PGP7 1564 aa19.15■□□□□ 0.66
LDLR-212ENST00000560467 FBXO41Q8TF61 875 aa19.14■□□□□ 0.65
LDLR-212ENST00000560467 CDK13Q14004 1512 aaKnown RBP19.14■□□□□ 0.65
LDLR-212ENST00000560467 YEATS2Q9ULM3 1422 aa19.13■□□□□ 0.65
LDLR-212ENST00000560467 RICTORQ6R327 1708 aa19.12■□□□□ 0.65
LDLR-212ENST00000560467 PLPPR3Q6T4P5 718 aa19.11■□□□□ 0.65
LDLR-212ENST00000560467 ZMYM4Q5VZL5 1548 aa19.1■□□□□ 0.65
LDLR-212ENST00000560467 EHMT2Q96KQ7 1210 aa19.09■□□□□ 0.65
LDLR-212ENST00000560467 CFAP74Q9C0B2 1584 aa19.09■□□□□ 0.65
LDLR-212ENST00000560467 ZFYVE16Q7Z3T8 1539 aa19.09■□□□□ 0.65
LDLR-212ENST00000560467 RIMS1Q86UR5 1692 aaKnown RBP19.08■□□□□ 0.65
LDLR-212ENST00000560467 HSPA2P54652 639 aa19.07■□□□□ 0.64
LDLR-212ENST00000560467 POGZQ7Z3K3 1410 aa19.07■□□□□ 0.64
LDLR-212ENST00000560467 MLECQ14165 292 aa19.06■□□□□ 0.64
LDLR-212ENST00000560467 SCAPERQ9BY12 1400 aa19.06■□□□□ 0.64
LDLR-212ENST00000560467 PLCH2O75038 1416 aa19.05■□□□□ 0.64
Retrieved 100 of 20,778 RNA–protein pairs in 20.9 ms