RNA–Protein interactions for RNA: ENST00000559511.5

SPG11-217, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

APPRIS ALT2 TSL 2

Gene SPG11, Length 2,127 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-217ENST00000559511 ERCC6Q03468 1493 aa16.75■□□□□ 0.27
SPG11-217ENST00000559511 HNRNPUL2Q1KMD3 747 aaKnown RBP16.74■□□□□ 0.27
SPG11-217ENST00000559511 KANK4Q5T7N3 995 aaPredicted RBP16.72■□□□□ 0.27
SPG11-217ENST00000559511 AQRO60306 1485 aaKnown RBP eCLIP16.72■□□□□ 0.272e-7■■■■□ 20.6
SPG11-217ENST00000559511 IFT140Q96RY7 1462 aa16.72■□□□□ 0.27
SPG11-217ENST00000559511 EFCAB5A4FU69 1503 aa16.69■□□□□ 0.26
SPG11-217ENST00000559511 ADAMTS12P58397 1594 aa16.68■□□□□ 0.26
SPG11-217ENST00000559511 ZNF608Q9ULD9 1512 aaPredicted RBP16.68■□□□□ 0.26
SPG11-217ENST00000559511 GRIN2BQ13224 1484 aa16.66■□□□□ 0.26
SPG11-217ENST00000559511 FHAD1B1AJZ9 1412 aa16.65■□□□□ 0.26
SPG11-217ENST00000559511 EIF4G3O43432 1585 aaKnown RBP16.64■□□□□ 0.25
SPG11-217ENST00000559511 PCF11O94913 1555 aaKnown RBP16.63■□□□□ 0.25
SPG11-217ENST00000559511 SAMD9Q5K651 1589 aa16.63■□□□□ 0.25
SPG11-217ENST00000559511 TIAM1Q13009 1591 aa16.62■□□□□ 0.25
SPG11-217ENST00000559511 FHOD3Q2V2M9 1422 aa16.62■□□□□ 0.25
SPG11-217ENST00000559511 P3H3Q8IVL6 736 aa16.62■□□□□ 0.25
SPG11-217ENST00000559511 RRBP1Q9P2E9 1410 aaKnown RBP16.61■□□□□ 0.25
SPG11-217ENST00000559511 MAP3K1Q13233 1512 aa16.61■□□□□ 0.25
SPG11-217ENST00000559511 CFAP43Q8NDM7 1665 aa16.6■□□□□ 0.25
SPG11-217ENST00000559511 SNAPC4Q5SXM2 1469 aa16.55■□□□□ 0.24
SPG11-217ENST00000559511 FYCO1Q9BQS8 1478 aa16.55■□□□□ 0.24
SPG11-217ENST00000559511 IQGAP2Q13576 1575 aa16.55■□□□□ 0.24
SPG11-217ENST00000559511 CASKIN1Q8WXD9 1431 aa16.53■□□□□ 0.24
SPG11-217ENST00000559511 LRRC9Q6ZRR7 1453 aa16.52■□□□□ 0.24
SPG11-217ENST00000559511 CCNB3Q8WWL7 1395 aa16.52■□□□□ 0.24
SPG11-217ENST00000559511 LRRIQ1Q96JM4 1722 aa16.52■□□□□ 0.24
SPG11-217ENST00000559511 FMN1Q68DA7 1419 aa16.52■□□□□ 0.23
SPG11-217ENST00000559511 MAGI1Q96QZ7 1491 aaPredicted RBP16.49■□□□□ 0.23
SPG11-217ENST00000559511 GRIN2AQ12879 1464 aa16.48■□□□□ 0.23
SPG11-217ENST00000559511 ATP1B4Q9UN42 357 aaPredicted RBP16.46■□□□□ 0.23
SPG11-217ENST00000559511 DHX57Q6P158 1386 aaKnown RBP16.46■□□□□ 0.23
SPG11-217ENST00000559511 UGGT2Q9NYU1 1516 aa16.45■□□□□ 0.22
SPG11-217ENST00000559511 KIAA0586Q9BVV6 1533 aa16.44■□□□□ 0.22
SPG11-217ENST00000559511 PHLDB1Q86UU1 1377 aa16.44■□□□□ 0.22
SPG11-217ENST00000559511 SYNJ2O15056 1496 aa16.43■□□□□ 0.22
SPG11-217ENST00000559511 DIEXFQ68CQ4 756 aaKnown RBP16.42■□□□□ 0.22
SPG11-217ENST00000559511 CEP170Q5SW79 1584 aa16.41■□□□□ 0.22
SPG11-217ENST00000559511 ITGAEP38570 1179 aa16.4■□□□□ 0.22
SPG11-217ENST00000559511 ZNF316A6NFI3 1004 aaPredicted RBP16.39■□□□□ 0.21
SPG11-217ENST00000559511 CLSPNQ9HAW4 1339 aa16.39■□□□□ 0.21
SPG11-217ENST00000559511 KIAA0556O60303 1618 aa16.38■□□□□ 0.21
SPG11-217ENST00000559511 DISP1Q96F81 1524 aa16.37■□□□□ 0.21
SPG11-217ENST00000559511 CHMP7Q8WUX9 453 aaPredicted RBP16.37■□□□□ 0.21
SPG11-217ENST00000559511 HECW1Q76N89 1606 aa16.36■□□□□ 0.21
SPG11-217ENST00000559511 NUP160Q12769 1436 aa16.33■□□□□ 0.2
SPG11-217ENST00000559511 RAB3GAP2Q9H2M9 1393 aa16.32■□□□□ 0.2
SPG11-217ENST00000559511 CCDC18Q5T9S5 1454 aa16.32■□□□□ 0.2
SPG11-217ENST00000559511 FBLN2P98095 1184 aa16.32■□□□□ 0.2
SPG11-217ENST00000559511 SUPT6HQ7KZ85 1726 aaKnown RBP16.31■□□□□ 0.2
SPG11-217ENST00000559511 MTUS2Q5JR59 1369 aa16.31■□□□□ 0.2
SPG11-217ENST00000559511 MAGI3Q5TCQ9 1506 aa16.3■□□□□ 0.2
SPG11-217ENST00000559511 EHBP1L1Q8N3D4 1523 aa16.3■□□□□ 0.2
SPG11-217ENST00000559511 FAM50AQ14320 339 aaKnown RBP16.3■□□□□ 0.2
SPG11-217ENST00000559511 EPRSP07814 1512 aaKnown RBP16.29■□□□□ 0.2
SPG11-217ENST00000559511 CHD1O14646 1710 aa16.28■□□□□ 0.2
SPG11-217ENST00000559511 SETD5Q9C0A6 1442 aa16.28■□□□□ 0.2
SPG11-217ENST00000559511 RAPGEF6Q8TEU7 1601 aa16.27■□□□□ 0.2
SPG11-217ENST00000559511 CDK13Q14004 1512 aaKnown RBP16.27■□□□□ 0.19
SPG11-217ENST00000559511 NCOA2Q15596 1464 aa16.26■□□□□ 0.19
SPG11-217ENST00000559511 MAPKBP1O60336 1514 aa16.26■□□□□ 0.19
SPG11-217ENST00000559511 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP16.25■□□□□ 0.19
SPG11-217ENST00000559511 FGD6Q6ZV73 1430 aa16.24■□□□□ 0.19
SPG11-217ENST00000559511 ARHGEF11O15085 1522 aa16.24■□□□□ 0.19
SPG11-217ENST00000559511 JPH4Q96JJ6 628 aa16.22■□□□□ 0.19
SPG11-217ENST00000559511 NUP153P49790 1475 aaKnown RBP16.21■□□□□ 0.19
SPG11-217ENST00000559511 MYOM3Q5VTT5 1437 aa16.21■□□□□ 0.19
SPG11-217ENST00000559511 CARMIL2Q6F5E8 1435 aa16.2■□□□□ 0.18
SPG11-217ENST00000559511 ARID3CA6NKF2 412 aa16.18■□□□□ 0.18
SPG11-217ENST00000559511 PTPN23Q9H3S7 1636 aa16.17■□□□□ 0.18
SPG11-217ENST00000559511 PLB1Q6P1J6 1458 aa16.16■□□□□ 0.18
SPG11-217ENST00000559511 PTPRKQ15262 1439 aa16.15■□□□□ 0.18
SPG11-217ENST00000559511 SCAF1Q9H7N4 1312 aaKnown RBP16.13■□□□□ 0.17
SPG11-217ENST00000559511 SHROOM2Q13796 1616 aa16.12■□□□□ 0.17
SPG11-217ENST00000559511 ABCA8O94911 1581 aa16.12■□□□□ 0.17
SPG11-217ENST00000559511 MIER1Q8N108 512 aa16.12■□□□□ 0.17
SPG11-217ENST00000559511 TCOF1Q13428 1488 aaKnown RBP16.11■□□□□ 0.17
SPG11-217ENST00000559511 PRG4Q92954 1404 aaPredicted RBP16.11■□□□□ 0.17
SPG11-217ENST00000559511 NEUROD1Q13562 356 aa16.09■□□□□ 0.17
SPG11-217ENST00000559511 ACIN1Q9UKV3 1341 aaKnown RBP16.09■□□□□ 0.17
SPG11-217ENST00000559511 HFM1A2PYH4 1435 aa16.09■□□□□ 0.17
SPG11-217ENST00000559511 ADCY10Q96PN6 1610 aa16.08■□□□□ 0.16
SPG11-217ENST00000559511 MIA2Q96PC5 1412 aa16.07■□□□□ 0.16
SPG11-217ENST00000559511 SIN3AQ96ST3 1273 aa16.07■□□□□ 0.16
SPG11-217ENST00000559511 CDK11AQ9UQ88 783 aaPredicted RBP16.06■□□□□ 0.16
SPG11-217ENST00000559511 TROQ12816 1431 aaPredicted RBP16.05■□□□□ 0.16
SPG11-217ENST00000559511 NAIPQ13075 1403 aa16.05■□□□□ 0.16
SPG11-217ENST00000559511 KIF14Q15058 1648 aa16.04■□□□□ 0.16
SPG11-217ENST00000559511 ITSN2Q9NZM3 1697 aa16.03■□□□□ 0.16
SPG11-217ENST00000559511 CENPBP07199 599 aaPredicted RBP16.03■□□□□ 0.16
SPG11-217ENST00000559511 PTPRGP23470 1445 aa16.02■□□□□ 0.15
SPG11-217ENST00000559511 ERCC6L2Q5T890 1561 aa16.02■□□□□ 0.15
SPG11-217ENST00000559511 CLASP1Q7Z460 1538 aa16.02■□□□□ 0.15
SPG11-217ENST00000559511 GCC2Q8IWJ2 1684 aa16.02■□□□□ 0.15
SPG11-217ENST00000559511 ATP10BO94823 1461 aa16.02■□□□□ 0.15
SPG11-217ENST00000559511 UACAQ9BZF9 1416 aa16.01■□□□□ 0.15
SPG11-217ENST00000559511 CDC42BPAQ5VT25 1732 aa15.98■□□□□ 0.15
SPG11-217ENST00000559511 DNMT1P26358 1616 aaKnown RBP15.98■□□□□ 0.15
SPG11-217ENST00000559511 YTHDC1Q96MU7 727 aaKnown RBP15.97■□□□□ 0.15
SPG11-217ENST00000559511 GPATCH8Q9UKJ3 1502 aaKnown RBP15.96■□□□□ 0.15
SPG11-217ENST00000559511 KDM6BO15054 1643 aa15.95■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 7.6 ms