RNA–Protein interactions for RNA: ENST00000557626.5

TMEM260-215, Transcript of transmembrane protein 260, humanhuman

TSL 1 (best)

Gene TMEM260, Length 1,262 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM260-215ENST00000557626 LMTK3Q96Q04 1460 aa25.23■■□□□ 1.63
TMEM260-215ENST00000557626 CUX1P39880 1505 aa25.22■■□□□ 1.63
TMEM260-215ENST00000557626 ABCA5Q8WWZ7 1642 aa25.21■■□□□ 1.63
TMEM260-215ENST00000557626 PRG4Q92954 1404 aaPredicted RBP25.14■■□□□ 1.62
TMEM260-215ENST00000557626 ADAMTS12P58397 1594 aa25.14■■□□□ 1.61
TMEM260-215ENST00000557626 ABCA10Q8WWZ4 1543 aa25.1■■□□□ 1.61
TMEM260-215ENST00000557626 ADCY10Q96PN6 1610 aa25.08■■□□□ 1.6
TMEM260-215ENST00000557626 SOCS7O14512 581 aa25■■□□□ 1.59
TMEM260-215ENST00000557626 JPH4Q96JJ6 628 aa24.98■■□□□ 1.59
TMEM260-215ENST00000557626 FHAD1B1AJZ9 1412 aa24.97■■□□□ 1.59
TMEM260-215ENST00000557626 PPRC1Q5VV67 1664 aaKnown RBP24.92■■□□□ 1.58
TMEM260-215ENST00000557626 ILDR2Q71H61 639 aa24.88■■□□□ 1.57
TMEM260-215ENST00000557626 TOP2BQ02880 1626 aa24.87■■□□□ 1.57
TMEM260-215ENST00000557626 COL17A1Q9UMD9 1497 aaPredicted RBP24.82■■□□□ 1.56
TMEM260-215ENST00000557626 RUSC2Q8N2Y8 1516 aa24.81■■□□□ 1.56
TMEM260-215ENST00000557626 DISP3Q9P2K9 1392 aa24.8■■□□□ 1.56
TMEM260-215ENST00000557626 GLI2P10070 1586 aa24.78■■□□□ 1.56
TMEM260-215ENST00000557626 ERICH3Q5RHP9 1530 aa24.76■■□□□ 1.55
TMEM260-215ENST00000557626 WRNQ14191 1432 aaPredicted RBP eCLIP24.72■■□□□ 1.55
TMEM260-215ENST00000557626 ASXL2Q76L83 1435 aa24.69■■□□□ 1.54
TMEM260-215ENST00000557626 PLB1Q6P1J6 1458 aa24.69■■□□□ 1.54
TMEM260-215ENST00000557626 TEX14Q8IWB6 1497 aa24.66■■□□□ 1.54
TMEM260-215ENST00000557626 ABCC2Q92887 1545 aa24.63■■□□□ 1.53
TMEM260-215ENST00000557626 MAP3K4Q9Y6R4 1608 aa24.62■■□□□ 1.53
TMEM260-215ENST00000557626 CUL7Q14999 1698 aa24.56■■□□□ 1.52
TMEM260-215ENST00000557626 PTPRGP23470 1445 aa24.55■■□□□ 1.52
TMEM260-215ENST00000557626 EPRSP07814 1512 aaKnown RBP24.53■■□□□ 1.52
TMEM260-215ENST00000557626 KIF21BO75037 1637 aa24.53■■□□□ 1.52
TMEM260-215ENST00000557626 TTBK1Q5TCY1 1321 aaPredicted RBP24.52■■□□□ 1.52
TMEM260-215ENST00000557626 KIAA0586Q9BVV6 1533 aa24.5■■□□□ 1.51
TMEM260-215ENST00000557626 PCF11O94913 1555 aaKnown RBP24.5■■□□□ 1.51
TMEM260-215ENST00000557626 SPATA31D1Q6ZQQ2 1576 aa24.5■■□□□ 1.51
TMEM260-215ENST00000557626 PTPRMP28827 1452 aa24.48■■□□□ 1.51
TMEM260-215ENST00000557626 CERKQ8TCT0 537 aa24.47■■□□□ 1.51
TMEM260-215ENST00000557626 BIVM-ERCC5R4GMW8 1640 aa24.46■■□□□ 1.51
TMEM260-215ENST00000557626 UHRF1BP1LA0JNW5 1464 aa24.4■■□□□ 1.5
TMEM260-215ENST00000557626 TNIKQ9UKE5 1360 aa24.39■■□□□ 1.49
TMEM260-215ENST00000557626 ADAMTSL3P82987 1691 aa24.37■■□□□ 1.49
TMEM260-215ENST00000557626 CARMIL2Q6F5E8 1435 aa24.33■■□□□ 1.49
TMEM260-215ENST00000557626 UACAQ9BZF9 1416 aa24.33■■□□□ 1.49
TMEM260-215ENST00000557626 KDM5BQ9UGL1 1544 aa24.3■■□□□ 1.48
TMEM260-215ENST00000557626 ZCCHC11Q5TAX3 1644 aaKnown RBP24.3■■□□□ 1.48
TMEM260-215ENST00000557626 MAGI3Q5TCQ9 1506 aa24.25■■□□□ 1.47
TMEM260-215ENST00000557626 HSPA2P54652 639 aa24.23■■□□□ 1.47
TMEM260-215ENST00000557626 CFAP43Q8NDM7 1665 aa24.22■■□□□ 1.47
TMEM260-215ENST00000557626 MADDQ8WXG6 1647 aa24.22■■□□□ 1.47
TMEM260-215ENST00000557626 WDR7Q9Y4E6 1490 aa24.22■■□□□ 1.47
TMEM260-215ENST00000557626 CD109Q6YHK3 1445 aa24.22■■□□□ 1.47
TMEM260-215ENST00000557626 BCORL1Q5H9F3 1711 aa24.19■■□□□ 1.46
TMEM260-215ENST00000557626 ARAP3Q8WWN8 1544 aa24.11■■□□□ 1.45
TMEM260-215ENST00000557626 RIMS1Q86UR5 1692 aaKnown RBP24.11■■□□□ 1.45
TMEM260-215ENST00000557626 IQGAP2Q13576 1575 aa24.1■■□□□ 1.45
TMEM260-215ENST00000557626 ARID4BQ4LE39 1312 aaPredicted RBP24.08■■□□□ 1.44
TMEM260-215ENST00000557626 IGF1RP08069 1367 aa24.06■■□□□ 1.44
TMEM260-215ENST00000557626 DISP1Q96F81 1524 aa24.05■■□□□ 1.44
TMEM260-215ENST00000557626 KCNH8Q96L42 1107 aa24.05■■□□□ 1.44
TMEM260-215ENST00000557626 PLPPR3Q6T4P5 718 aa24■■□□□ 1.43
TMEM260-215ENST00000557626 KIF27Q86VH2 1401 aa23.93■■□□□ 1.42
TMEM260-215ENST00000557626 RAPGEF3O95398 923 aa23.91■■□□□ 1.42
TMEM260-215ENST00000557626 KIAA0556O60303 1618 aa23.9■■□□□ 1.42
TMEM260-215ENST00000557626 CARMIL1Q5VZK9 1371 aa23.9■■□□□ 1.42
TMEM260-215ENST00000557626 PHLDB1Q86UU1 1377 aa23.9■■□□□ 1.42
TMEM260-215ENST00000557626 DMRT2Q9Y5R5 561 aa23.87■■□□□ 1.41
TMEM260-215ENST00000557626 UGGT2Q9NYU1 1516 aa23.86■■□□□ 1.41
TMEM260-215ENST00000557626 YEATS2Q9ULM3 1422 aa23.85■■□□□ 1.41
TMEM260-215ENST00000557626 FRMPD1Q5SYB0 1578 aa23.84■■□□□ 1.41
TMEM260-215ENST00000557626 ARHGEF40Q8TER5 1519 aa23.84■■□□□ 1.41
TMEM260-215ENST00000557626 STRCQ7RTU9 1775 aa23.82■■□□□ 1.4
TMEM260-215ENST00000557626 PREX1Q8TCU6 1659 aa23.8■■□□□ 1.4
TMEM260-215ENST00000557626 POGZQ7Z3K3 1410 aa23.79■■□□□ 1.4
TMEM260-215ENST00000557626 NEO1Q92859 1461 aa23.76■■□□□ 1.39
TMEM260-215ENST00000557626 FER1L4A9Z1Z3 1794 aa23.75■■□□□ 1.39
TMEM260-215ENST00000557626 FANCAO15360 1455 aa23.75■■□□□ 1.39
TMEM260-215ENST00000557626 IQSEC2Q5JU85 1478 aa23.75■■□□□ 1.39
TMEM260-215ENST00000557626 ABCA8O94911 1581 aa23.74■■□□□ 1.39
TMEM260-215ENST00000557626 TTC37Q6PGP7 1564 aa23.74■■□□□ 1.39
TMEM260-215ENST00000557626 ABCA9Q8IUA7 1624 aa23.74■■□□□ 1.39
TMEM260-215ENST00000557626 LTBP4Q8N2S1 1624 aa23.69■■□□□ 1.38
TMEM260-215ENST00000557626 PTPRTO14522 1441 aa23.67■■□□□ 1.38
TMEM260-215ENST00000557626 AKNAQ7Z591 1439 aa23.66■■□□□ 1.38
TMEM260-215ENST00000557626 SIGLEC1Q9BZZ2 1709 aa23.65■■□□□ 1.38
TMEM260-215ENST00000557626 MLECQ14165 292 aa23.65■■□□□ 1.38
TMEM260-215ENST00000557626 RICTORQ6R327 1708 aa23.63■■□□□ 1.37
TMEM260-215ENST00000557626 MED1Q15648 1581 aaPredicted RBP23.62■■□□□ 1.37
TMEM260-215ENST00000557626 UHRF1BP1Q6BDS2 1440 aa23.6■■□□□ 1.37
TMEM260-215ENST00000557626 DENND4BO75064 1496 aaPredicted RBP23.6■■□□□ 1.37
TMEM260-215ENST00000557626 ARID3CA6NKF2 412 aa23.58■■□□□ 1.37
TMEM260-215ENST00000557626 ZFYVE16Q7Z3T8 1539 aa23.57■■□□□ 1.36
TMEM260-215ENST00000557626 GOLGA3Q08378 1498 aa23.56■■□□□ 1.36
TMEM260-215ENST00000557626 UBAP1LF5GYI3 381 aa23.56■■□□□ 1.36
TMEM260-215ENST00000557626 EFCAB5A4FU69 1503 aa23.55■■□□□ 1.36
TMEM260-215ENST00000557626 FHOD3Q2V2M9 1422 aa23.54■■□□□ 1.36
TMEM260-215ENST00000557626 CEBPAP49715 358 aaPredicted RBP23.53■■□□□ 1.36
TMEM260-215ENST00000557626 RAPGEF2Q9Y4G8 1499 aa23.53■■□□□ 1.36
TMEM260-215ENST00000557626 ZMYM4Q5VZL5 1548 aa23.53■■□□□ 1.36
TMEM260-215ENST00000557626 SETD1BQ9UPS6 1966 aaKnown RBP23.52■■□□□ 1.36
TMEM260-215ENST00000557626 ATP10BO94823 1461 aa23.52■■□□□ 1.36
TMEM260-215ENST00000557626 ARHGEF12Q9NZN5 1544 aa23.52■■□□□ 1.36
TMEM260-215ENST00000557626 SUPT5HO00267 1087 aaKnown RBP23.49■■□□□ 1.35
TMEM260-215ENST00000557626 CTTNBP2Q8WZ74 1663 aa23.48■■□□□ 1.35
Retrieved 100 of 20,778 RNA–protein pairs in 50.7 ms