RNA–Protein interactions for RNA: ENST00000557348.5

SHMT2-229, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 1,659 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-229ENST00000557348 RANGAP1P46060 587 aaPredicted RBP19.4■□□□□ 0.7
SHMT2-229ENST00000557348 ADAMTS12P58397 1594 aa19.39■□□□□ 0.69
SHMT2-229ENST00000557348 AQRO60306 1485 aaKnown RBP eCLIP19.36■□□□□ 0.694e-7■■■■□ 20.7
SHMT2-229ENST00000557348 MAP3K1Q13233 1512 aa19.36■□□□□ 0.69
SHMT2-229ENST00000557348 PPARGC1BQ86YN6 1023 aaKnown RBP19.35■□□□□ 0.69
SHMT2-229ENST00000557348 EIF4G3O43432 1585 aaKnown RBP19.31■□□□□ 0.68
SHMT2-229ENST00000557348 MAGI1Q96QZ7 1491 aaPredicted RBP19.31■□□□□ 0.68
SHMT2-229ENST00000557348 ZNF608Q9ULD9 1512 aaPredicted RBP19.3■□□□□ 0.68
SHMT2-229ENST00000557348 ZEB1P37275 1124 aaPredicted RBP19.3■□□□□ 0.68
SHMT2-229ENST00000557348 FMN1Q68DA7 1419 aa19.29■□□□□ 0.68
SHMT2-229ENST00000557348 SAMD9Q5K651 1589 aa19.27■□□□□ 0.68
SHMT2-229ENST00000557348 FYCO1Q9BQS8 1478 aa19.26■□□□□ 0.67
SHMT2-229ENST00000557348 SNAPC4Q5SXM2 1469 aa19.24■□□□□ 0.67
SHMT2-229ENST00000557348 IQGAP2Q13576 1575 aa19.24■□□□□ 0.67
SHMT2-229ENST00000557348 CASKIN1Q8WXD9 1431 aa19.23■□□□□ 0.67
SHMT2-229ENST00000557348 DNAJC5Q9H3Z4 198 aa19.22■□□□□ 0.67
SHMT2-229ENST00000557348 TIAM1Q13009 1591 aa19.21■□□□□ 0.67
SHMT2-229ENST00000557348 SYNJ2O15056 1496 aa19.2■□□□□ 0.66
SHMT2-229ENST00000557348 GRIN2AQ12879 1464 aa19.2■□□□□ 0.66
SHMT2-229ENST00000557348 FHOD3Q2V2M9 1422 aa19.2■□□□□ 0.66
SHMT2-229ENST00000557348 KIAA0586Q9BVV6 1533 aa19.19■□□□□ 0.66
SHMT2-229ENST00000557348 TTBK1Q5TCY1 1321 aaPredicted RBP19.18■□□□□ 0.66
SHMT2-229ENST00000557348 PCF11O94913 1555 aaKnown RBP19.18■□□□□ 0.66
SHMT2-229ENST00000557348 UGGT2Q9NYU1 1516 aa19.17■□□□□ 0.66
SHMT2-229ENST00000557348 CFAP43Q8NDM7 1665 aa19.17■□□□□ 0.66
SHMT2-229ENST00000557348 LRRC9Q6ZRR7 1453 aa19.12■□□□□ 0.65
SHMT2-229ENST00000557348 RRBP1Q9P2E9 1410 aaKnown RBP19.11■□□□□ 0.65
SHMT2-229ENST00000557348 KANK4Q5T7N3 995 aaPredicted RBP19.11■□□□□ 0.65
SHMT2-229ENST00000557348 P3H3Q8IVL6 736 aa19.11■□□□□ 0.65
SHMT2-229ENST00000557348 CHMP7Q8WUX9 453 aaPredicted RBP19.1■□□□□ 0.65
SHMT2-229ENST00000557348 NUP160Q12769 1436 aa19.06■□□□□ 0.64
SHMT2-229ENST00000557348 CCDC18Q5T9S5 1454 aa19.06■□□□□ 0.64
SHMT2-229ENST00000557348 MYT1Q01538 1121 aa19.04■□□□□ 0.64
SHMT2-229ENST00000557348 HECW1Q76N89 1606 aa19.03■□□□□ 0.64
SHMT2-229ENST00000557348 KIAA0556O60303 1618 aa19.02■□□□□ 0.63
SHMT2-229ENST00000557348 CCNB3Q8WWL7 1395 aa19.02■□□□□ 0.63
SHMT2-229ENST00000557348 CEP170Q5SW79 1584 aa19.01■□□□□ 0.63
SHMT2-229ENST00000557348 ATP1B4Q9UN42 357 aaPredicted RBP18.99■□□□□ 0.63
SHMT2-229ENST00000557348 CARMIL2Q6F5E8 1435 aa18.99■□□□□ 0.63
SHMT2-229ENST00000557348 DISP1Q96F81 1524 aa18.98■□□□□ 0.63
SHMT2-229ENST00000557348 CCER1Q8TC90 406 aaPredicted RBP18.97■□□□□ 0.63
SHMT2-229ENST00000557348 EHBP1L1Q8N3D4 1523 aa18.97■□□□□ 0.63
SHMT2-229ENST00000557348 MTUS2Q5JR59 1369 aa18.96■□□□□ 0.63
SHMT2-229ENST00000557348 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP18.94■□□□□ 0.62
SHMT2-229ENST00000557348 FBLN2P98095 1184 aa18.94■□□□□ 0.62
SHMT2-229ENST00000557348 HNRNPUL2Q1KMD3 747 aaKnown RBP18.92■□□□□ 0.62
SHMT2-229ENST00000557348 EPRSP07814 1512 aaKnown RBP18.9■□□□□ 0.62
SHMT2-229ENST00000557348 PHLDB1Q86UU1 1377 aa18.9■□□□□ 0.62
SHMT2-229ENST00000557348 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP18.89■□□□□ 0.61
SHMT2-229ENST00000557348 SUPT6HQ7KZ85 1726 aaKnown RBP18.88■□□□□ 0.61
SHMT2-229ENST00000557348 JPH4Q96JJ6 628 aa18.88■□□□□ 0.61
SHMT2-229ENST00000557348 RAPGEF6Q8TEU7 1601 aa18.86■□□□□ 0.61
SHMT2-229ENST00000557348 LRRIQ1Q96JM4 1722 aa18.85■□□□□ 0.61
SHMT2-229ENST00000557348 NCOA2Q15596 1464 aa18.83■□□□□ 0.61
SHMT2-229ENST00000557348 FGD6Q6ZV73 1430 aa18.82■□□□□ 0.6
SHMT2-229ENST00000557348 CLSPNQ9HAW4 1339 aa18.82■□□□□ 0.6
SHMT2-229ENST00000557348 CDK11AQ9UQ88 783 aaPredicted RBP18.82■□□□□ 0.6
SHMT2-229ENST00000557348 ARHGEF11O15085 1522 aa18.82■□□□□ 0.6
SHMT2-229ENST00000557348 MYOM3Q5VTT5 1437 aa18.81■□□□□ 0.6
SHMT2-229ENST00000557348 CHD1O14646 1710 aa18.8■□□□□ 0.6
SHMT2-229ENST00000557348 NUP153P49790 1475 aaKnown RBP18.8■□□□□ 0.6
SHMT2-229ENST00000557348 OSCARQ8IYS5 282 aa18.78■□□□□ 0.6
SHMT2-229ENST00000557348 SHROOM2Q13796 1616 aa18.76■□□□□ 0.59
SHMT2-229ENST00000557348 CDK13Q14004 1512 aaKnown RBP18.75■□□□□ 0.59
SHMT2-229ENST00000557348 MIA2Q96PC5 1412 aa18.75■□□□□ 0.59
SHMT2-229ENST00000557348 MAGI3Q5TCQ9 1506 aa18.75■□□□□ 0.59
SHMT2-229ENST00000557348 FAM50AQ14320 339 aaKnown RBP18.75■□□□□ 0.59
SHMT2-229ENST00000557348 PRG4Q92954 1404 aaPredicted RBP18.74■□□□□ 0.59
SHMT2-229ENST00000557348 ABCA8O94911 1581 aa18.73■□□□□ 0.59
SHMT2-229ENST00000557348 TCOF1Q13428 1488 aaKnown RBP18.71■□□□□ 0.59
SHMT2-229ENST00000557348 SETD5Q9C0A6 1442 aa18.7■□□□□ 0.58
SHMT2-229ENST00000557348 PLB1Q6P1J6 1458 aa18.7■□□□□ 0.58
SHMT2-229ENST00000557348 TROQ12816 1431 aaPredicted RBP18.7■□□□□ 0.58
SHMT2-229ENST00000557348 PTPRGP23470 1445 aa18.69■□□□□ 0.58
SHMT2-229ENST00000557348 PTPN23Q9H3S7 1636 aa18.68■□□□□ 0.58
SHMT2-229ENST00000557348 CLASP1Q7Z460 1538 aa18.67■□□□□ 0.58
SHMT2-229ENST00000557348 DHX57Q6P158 1386 aaKnown RBP18.66■□□□□ 0.58
SHMT2-229ENST00000557348 ADCY10Q96PN6 1610 aa18.65■□□□□ 0.58
SHMT2-229ENST00000557348 ITGAEP38570 1179 aa18.65■□□□□ 0.58
SHMT2-229ENST00000557348 RAB3GAP2Q9H2M9 1393 aa18.64■□□□□ 0.57
SHMT2-229ENST00000557348 ACIN1Q9UKV3 1341 aaKnown RBP18.62■□□□□ 0.57
SHMT2-229ENST00000557348 AKNAQ7Z591 1439 aa18.61■□□□□ 0.57
SHMT2-229ENST00000557348 HFM1A2PYH4 1435 aa18.6■□□□□ 0.57
SHMT2-229ENST00000557348 UACAQ9BZF9 1416 aa18.6■□□□□ 0.57
SHMT2-229ENST00000557348 ITSN2Q9NZM3 1697 aa18.6■□□□□ 0.57
SHMT2-229ENST00000557348 PLEKHD1A6NEE1 506 aa18.59■□□□□ 0.57
SHMT2-229ENST00000557348 ATP10BO94823 1461 aa18.58■□□□□ 0.57
SHMT2-229ENST00000557348 RIMBP3CA6NJZ7 1639 aa18.57■□□□□ 0.56
SHMT2-229ENST00000557348 RIMBP3BA6NNM3 1639 aa18.57■□□□□ 0.56
SHMT2-229ENST00000557348 RIMBP3Q9UFD9 1639 aa18.57■□□□□ 0.56
SHMT2-229ENST00000557348 KIF14Q15058 1648 aa18.57■□□□□ 0.56
SHMT2-229ENST00000557348 SCAF1Q9H7N4 1312 aaKnown RBP18.55■□□□□ 0.56
SHMT2-229ENST00000557348 ARID3CA6NKF2 412 aa18.55■□□□□ 0.56
SHMT2-229ENST00000557348 ABCC2Q92887 1545 aa18.54■□□□□ 0.56
SHMT2-229ENST00000557348 UHRF1BP1LA0JNW5 1464 aa18.53■□□□□ 0.56
SHMT2-229ENST00000557348 ROCK1Q13464 1354 aa18.51■□□□□ 0.55
SHMT2-229ENST00000557348 GPATCH8Q9UKJ3 1502 aaKnown RBP18.49■□□□□ 0.55
SHMT2-229ENST00000557348 NAIPQ13075 1403 aa18.49■□□□□ 0.55
SHMT2-229ENST00000557348 PTPRKQ15262 1439 aa18.49■□□□□ 0.55
SHMT2-229ENST00000557348 DNMT1P26358 1616 aaKnown RBP18.49■□□□□ 0.55
Retrieved 100 of 20,778 RNA–protein pairs in 21.8 ms